Literature DB >> 34993529

Lattice Paths for Persistent Diagrams.

Moo K Chung1, Hernando Ombao2.   

Abstract

Persistent homology has undergone significant development in recent years. However, one outstanding challenge is to build a coherent statistical inference procedure on persistent diagrams. In this paper, we first present a new lattice path representation for persistent diagrams. We then develop a new exact statistical inference procedure for lattice paths via combinatorial enumerations. The lattice path method is applied to the topological characterization of the protein structures of the COVID-19 virus. We demonstrate that there are topological changes during the conformational change of spike proteins.

Entities:  

Year:  2021        PMID: 34993529      PMCID: PMC8730383          DOI: 10.1007/978-3-030-87444-5_8

Source DB:  PubMed          Journal:  Interpret Mach Intell Med Image Comput Topogr Data Anal Appl Med Data (2021)


  10 in total

1.  Nonparametric permutation tests for functional neuroimaging: a primer with examples.

Authors:  Thomas E Nichols; Andrew P Holmes
Journal:  Hum Brain Mapp       Date:  2002-01       Impact factor: 5.038

2.  Genetic influences on brain structure.

Authors:  P M Thompson; T D Cannon; K L Narr; T van Erp; V P Poutanen; M Huttunen; J Lönnqvist; C G Standertskjöld-Nordenstam; J Kaprio; M Khaledy; R Dail; C I Zoumalan; A W Toga
Journal:  Nat Neurosci       Date:  2001-12       Impact factor: 24.884

3.  Topology of viral evolution.

Authors:  Joseph Minhow Chan; Gunnar Carlsson; Raul Rabadan
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-29       Impact factor: 11.205

4.  Whole-brain anatomical networks: does the choice of nodes matter?

Authors:  Andrew Zalesky; Alex Fornito; Ian H Harding; Luca Cocchi; Murat Yücel; Christos Pantelis; Edward T Bullmore
Journal:  Neuroimage       Date:  2009-12-24       Impact factor: 6.556

5.  Exact Topological Inference for Paired Brain Networks via Persistent Homology.

Authors:  Moo K Chung; Victoria Vilalta-Gil; Hyekyoung Lee; Paul J Rathouz; Benjamin B Lahey; David H Zald
Journal:  Inf Process Med Imaging       Date:  2017-05-23

6.  Persistent spectral-based machine learning (PerSpect ML) for protein-ligand binding affinity prediction.

Authors:  Zhenyu Meng; Kelin Xia
Journal:  Sci Adv       Date:  2021-05-07       Impact factor: 14.136

7.  Exact topological inference of the resting-state brain networks in twins.

Authors:  Moo K Chung; Hyekyoung Lee; Alex DiChristofano; Hernando Ombao; Victor Solo
Journal:  Netw Neurosci       Date:  2019-07-01

8.  Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.

Authors:  Alexandra C Walls; Young-Jun Park; M Alejandra Tortorici; Abigail Wall; Andrew T McGuire; David Veesler
Journal:  Cell       Date:  2020-03-09       Impact factor: 41.582

9.  Distinct conformational states of SARS-CoV-2 spike protein.

Authors:  Yongfei Cai; Jun Zhang; Tianshu Xiao; Hanqin Peng; Sarah M Sterling; Richard M Walsh; Shaun Rawson; Sophia Rits-Volloch; Bing Chen
Journal:  Science       Date:  2020-07-21       Impact factor: 47.728

  10 in total

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