Literature DB >> 29075089

Exact Topological Inference for Paired Brain Networks via Persistent Homology.

Moo K Chung1, Victoria Vilalta-Gil1,2, Hyekyoung Lee3, Paul J Rathouz1, Benjamin B Lahey4, David H Zald2.   

Abstract

We present a novel framework for characterizing paired brain networks using techniques in hyper-networks, sparse learning and persistent homology. The framework is general enough for dealing with any type of paired images such as twins, multimodal and longitudinal images. The exact nonparametric statistical inference procedure is derived on testing monotonic graph theory features that do not rely on time consuming permutation tests. The proposed method computes the exact probability in quadratic time while the permutation tests require exponential time. As illustrations, we apply the method to simulated networks and a twin fMRI study. In case of the latter, we determine the statistical significance of the heritability index of the large-scale reward network where every voxel is a network node.

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Year:  2017        PMID: 29075089      PMCID: PMC5654491          DOI: 10.1007/978-3-319-59050-9_24

Source DB:  PubMed          Journal:  Inf Process Med Imaging        ISSN: 1011-2499


  9 in total

1.  Anticipation of increasing monetary reward selectively recruits nucleus accumbens.

Authors:  B Knutson; C M Adams; G W Fong; D Hommer
Journal:  J Neurosci       Date:  2001-08-15       Impact factor: 6.167

2.  Genetic influences on brain structure.

Authors:  P M Thompson; T D Cannon; K L Narr; T van Erp; V P Poutanen; M Huttunen; J Lönnqvist; C G Standertskjöld-Nordenstam; J Kaprio; M Khaledy; R Dail; C I Zoumalan; A W Toga
Journal:  Nat Neurosci       Date:  2001-12       Impact factor: 24.884

3.  PET/MRI: paving the way for the next generation of clinical multimodality imaging applications.

Authors:  Bernd J Pichler; Armin Kolb; Thomas Nägele; Heinz-Peter Schlemmer
Journal:  J Nucl Med       Date:  2010-02-11       Impact factor: 10.057

4.  Persistent Homology in Sparse Regression and Its Application to Brain Morphometry.

Authors:  Moo K Chung; Jamie L Hanson; Jieping Ye; Richard J Davidson; Seth D Pollak
Journal:  IEEE Trans Med Imaging       Date:  2015-03-24       Impact factor: 10.048

5.  Integrated multimodal network approach to PET and MRI based on multidimensional persistent homology.

Authors:  Hyekyoung Lee; Hyejin Kang; Moo K Chung; Seonhee Lim; Bung-Nyun Kim; Dong Soo Lee
Journal:  Hum Brain Mapp       Date:  2016-11-17       Impact factor: 5.038

6.  Computing the shape of brain networks using graph filtration and Gromov-Hausdorff metric.

Authors:  Hyekyoung Lee; Moo K Chung; Hyejin Kang; Boong-Nyun Kim; Dong Soo Lee
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

7.  Brain connectivity hyper-network for MCI classification.

Authors:  Biao Jie; Dinggang Shen; Daoqiang Zhang
Journal:  Med Image Comput Comput Assist Interv       Date:  2014

8.  Cooperation driven coherence: Brains working hard together.

Authors:  Anastasios Bezerianos; Yu Sun; Yu Chen; Kian Fong Woong; Fumihiko Taya; Pietro Arico; Gianluca Borghini; Fabio Babiloni; Nitish Thakor
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2015

9.  Modeling brain deformations in Alzheimer disease by fluid registration of serial 3D MR images.

Authors:  P A Freeborough; N C Fox
Journal:  J Comput Assist Tomogr       Date:  1998 Sep-Oct       Impact factor: 1.826

  9 in total
  12 in total

1.  A concise and persistent feature to study brain resting-state network dynamics: Findings from the Alzheimer's Disease Neuroimaging Initiative.

Authors:  Liqun Kuang; Xie Han; Kewei Chen; Richard J Caselli; Eric M Reiman; Yalin Wang
Journal:  Hum Brain Mapp       Date:  2018-12-19       Impact factor: 5.038

2.  Revisiting Abnormalities in Brain Network Architecture Underlying Autism Using Topology-Inspired Statistical Inference.

Authors:  Sourabh Palande; Vipin Jose; Brandon Zielinski; Jeffrey Anderson; P Thomas Fletcher; Bei Wang
Journal:  Connectomics Neuroimaging (2017)       Date:  2017-09-02

3.  Heritability of nested hierarchical structural brain network.

Authors:  Moo K Chung; Zhan Luo; Nagesh Adluru; Andrew L Alexander; Richard J Davidson; H Hill Goldsmith
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2018-07

4.  STATISTICAL INFERENCE ON THE NUMBER OF CYCLES IN BRAIN NETWORKS.

Authors:  Moo K Chung; Shih-Gu Huang; Andrey Gritsenko; Li Shen; Hyekyoung Lee
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2019-07-11

5.  Revisiting Abnormalities in Brain Network Architecture Underlying Autism Using Topology-Inspired Statistical Inference.

Authors:  Sourabh Palande; Vipin Jose; Brandon Zielinski; Jeffrey Anderson; P Thomas Fletcher; Bei Wang
Journal:  Brain Connect       Date:  2019-02

6.  Lattice Paths for Persistent Diagrams.

Authors:  Moo K Chung; Hernando Ombao
Journal:  Interpret Mach Intell Med Image Comput Topogr Data Anal Appl Med Data (2021)       Date:  2021-09-21

7.  Connectivity in fMRI: Blind Spots and Breakthroughs.

Authors:  Victor Solo; Jean-Baptiste Poline; Martin A Lindquist; Sean L Simpson; F DuBois Bowman; Moo K Chung; Ben Cassidy
Journal:  IEEE Trans Med Imaging       Date:  2018-07       Impact factor: 10.048

8.  Statistical Challenges of Big Brain Network Data.

Authors:  Moo K Chung
Journal:  Stat Probab Lett       Date:  2018-04-09       Impact factor: 0.870

9.  Topological Distances Between Brain Networks.

Authors:  Moo K Chung; Hyekyoung Lee; Victor Solo; Richard J Davidson; Seth D Pollak
Journal:  Connectomics Neuroimaging (2017)       Date:  2017-09-02

Review 10.  Statistical model for dynamically-changing correlation matrices with application to brain connectivity.

Authors:  Shih-Gu Huang; S Balqis Samdin; Chee-Ming Ting; Hernando Ombao; Moo K Chung
Journal:  J Neurosci Methods       Date:  2019-11-21       Impact factor: 2.390

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