Literature DB >> 34990551

Key Factors Governing Initial Stages of Lipid Droplet Formation.

Siyoung Kim1, Chenghan Li2, Robert V Farese3,4,5, Tobias C Walther3,4,5,6, Gregory A Voth2.   

Abstract

Lipid droplets (LDs) are neutral lipid storage organelles surrounded by a phospholipid (PL) monolayer. LD biogenesis from the endoplasmic reticulum is driven by phase separation of neutral lipids, overcoming surface tension and membrane deformation. However, the core biophysics of the initial steps of LD formation remains relatively poorly understood. Here, we use a tunable, phenomenological coarse-grained model to study triacylglycerol (TG) nucleation in a bilayer membrane. We show that PL rigidity has a strong influence on TG lensing and membrane remodeling: when membrane rigidity increases, TG clusters remain more planar with high anisotropy but a minor degree of phase nucleation. This finding is confirmed by advanced sampling simulations that calculate nucleation free energy as a function of the degree of nucleation and anisotropy. We also show that asymmetric tension, controlled by the number of PL molecules on each membrane leaflet, determines the budding direction. A TG lens buds in the direction of the monolayer containing excess PL molecules to allow for better PL coverage of TG, consistent with the reported experiments. Finally, two governing mechanisms of the LD growth, Ostwald ripening and merging, are observed. Taken together, this study characterizes the interplay between two thermodynamic quantities during the initial LD phases, the TG bulk free energy and membrane remodeling energy.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 34990551      PMCID: PMC8922452          DOI: 10.1021/acs.jpcb.1c09683

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  42 in total

1.  P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation.

Authors:  Berk Hess
Journal:  J Chem Theory Comput       Date:  2008-01       Impact factor: 6.006

2.  Membrane Curvature Catalyzes Lipid Droplet Assembly.

Authors:  Alexandre Santinho; Veijo T Salo; Aymeric Chorlay; Shiqian Li; Xin Zhou; Mohyeddine Omrane; Elina Ikonen; Abdou Rachid Thiam
Journal:  Curr Biol       Date:  2020-05-21       Impact factor: 10.834

3.  Bulging and budding of lipid droplets from symmetric and asymmetric membranes: competition between membrane elastic energy and interfacial energy.

Authors:  Meng Wang; Xin Yi
Journal:  Soft Matter       Date:  2021-04-20       Impact factor: 3.679

4.  MDAnalysis: a toolkit for the analysis of molecular dynamics simulations.

Authors:  Naveen Michaud-Agrawal; Elizabeth J Denning; Thomas B Woolf; Oliver Beckstein
Journal:  J Comput Chem       Date:  2011-04-15       Impact factor: 3.376

5.  Conical lipids in flat bilayers induce packing defects similar to that induced by positive curvature.

Authors:  Lydie Vamparys; Romain Gautier; Stefano Vanni; W F Drew Bennett; D Peter Tieleman; Bruno Antonny; Catherine Etchebest; Patrick F J Fuchs
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

Review 6.  Role of flippases, scramblases and transfer proteins in phosphatidylserine subcellular distribution.

Authors:  Hannah M Hankins; Ryan D Baldridge; Peng Xu; Todd R Graham
Journal:  Traffic       Date:  2014-11-05       Impact factor: 6.215

Review 7.  Dynamics and functions of lipid droplets.

Authors:  James A Olzmann; Pedro Carvalho
Journal:  Nat Rev Mol Cell Biol       Date:  2019-03       Impact factor: 94.444

Review 8.  Lipid Droplet Biogenesis.

Authors:  Tobias C Walther; Jeeyun Chung; Robert V Farese
Journal:  Annu Rev Cell Dev Biol       Date:  2017-08-09       Impact factor: 13.827

9.  Neutral lipids regulate amphipathic helix affinity for model lipid droplets.

Authors:  Aymeric Chorlay; Abdou Rachid Thiam
Journal:  J Cell Biol       Date:  2020-04-06       Impact factor: 10.539

10.  Seipin traps triacylglycerols to facilitate their nanoscale clustering in the endoplasmic reticulum membrane.

Authors:  Xavier Prasanna; Veijo T Salo; Shiqian Li; Katharina Ven; Helena Vihinen; Eija Jokitalo; Ilpo Vattulainen; Elina Ikonen
Journal:  PLoS Biol       Date:  2021-01-22       Impact factor: 8.029

View more
  3 in total

Review 1.  Computational Studies of Lipid Droplets.

Authors:  Siyoung Kim; Jessica M J Swanson; Gregory A Voth
Journal:  J Phys Chem B       Date:  2022-03-09       Impact factor: 2.991

2.  Seipin transmembrane segments critically function in triglyceride nucleation and lipid droplet budding from the membrane.

Authors:  Siyoung Kim; Jeeyun Chung; Henning Arlt; Alexander J Pak; Robert V Farese; Tobias C Walther; Gregory A Voth
Journal:  Elife       Date:  2022-05-18       Impact factor: 8.140

3.  Self-Assembly of Lipid Mixtures in Solutions: Structures, Dynamics Processes and Mechanical Properties.

Authors:  Lingling Sun; Fan Pan; Shiben Li
Journal:  Membranes (Basel)       Date:  2022-07-23
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.