Literature DB >> 35263109

Computational Studies of Lipid Droplets.

Siyoung Kim1, Jessica M J Swanson2, Gregory A Voth3.   

Abstract

Lipid droplets (LDs) are intracellular organelles whose primary function is energy storage. Known to emerge from the endoplasmic reticulum (ER) bilayer, LDs have a unique structure with a core consisting of neutral lipids, triacylglycerol (TG) or sterol esters (SE), surrounded by a phospholipid (PL) monolayer and decorated by proteins that come and go throughout their complex lifecycle. In this Feature Article, we review recent developments in computational studies of LDs, a rapidly growing area of research. We highlight how molecular dynamics (MD) simulations have provided valuable molecular-level insight into LD targeting and LD biogenesis. Additionally, we review the physical properties of TG from different force fields compared with experimental data. Possible future directions and challenges are discussed.

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Year:  2022        PMID: 35263109      PMCID: PMC8957551          DOI: 10.1021/acs.jpcb.2c00292

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  69 in total

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Journal:  Physiol Rev       Date:  1976-04       Impact factor: 37.312

3.  A dual apolipoprotein C-II mimetic-apolipoprotein C-III antagonist peptide lowers plasma triglycerides.

Authors:  Anna Wolska; Larry Lo; Denis O Sviridov; Mohsen Pourmousa; Milton Pryor; Soumitra S Ghosh; Rahul Kakkar; Michael Davidson; Sierra Wilson; Richard W Pastor; Ira J Goldberg; Debapriya Basu; Steven K Drake; Antony Cougnoux; Ming Jing Wu; Saskia B Neher; Lita A Freeman; Jingrong Tang; Marcelo Amar; Matt Devalaraja; Alan T Remaley
Journal:  Sci Transl Med       Date:  2020-01-29       Impact factor: 17.956

4.  A multiscale coarse-graining method for biomolecular systems.

Authors:  Sergei Izvekov; Gregory A Voth
Journal:  J Phys Chem B       Date:  2005-02-24       Impact factor: 2.991

5.  Protein Crowding Is a Determinant of Lipid Droplet Protein Composition.

Authors:  Nora Kory; Abdou-Rachid Thiam; Robert V Farese; Tobias C Walther
Journal:  Dev Cell       Date:  2015-07-23       Impact factor: 12.270

6.  LDAF1 and Seipin Form a Lipid Droplet Assembly Complex.

Authors:  Jeeyun Chung; Xudong Wu; Talley J Lambert; Zon Weng Lai; Tobias C Walther; Robert V Farese
Journal:  Dev Cell       Date:  2019-11-07       Impact factor: 12.270

Review 7.  The CYTOLD and ERTOLD pathways for lipid droplet-protein targeting.

Authors:  Maria-Jesus Olarte; Jessica M J Swanson; Tobias C Walther; Robert V Farese
Journal:  Trends Biochem Sci       Date:  2021-09-25       Impact factor: 13.807

8.  Synchrotron multimodal imaging in a whole cell reveals lipid droplet core organization.

Authors:  Frédéric Jamme; Bertrand Cinquin; Yann Gohon; Eva Pereiro; Matthieu Réfrégiers; Marine Froissard
Journal:  J Synchrotron Radiat       Date:  2020-04-23       Impact factor: 2.616

9.  Seipin traps triacylglycerols to facilitate their nanoscale clustering in the endoplasmic reticulum membrane.

Authors:  Xavier Prasanna; Veijo T Salo; Shiqian Li; Katharina Ven; Helena Vihinen; Eija Jokitalo; Ilpo Vattulainen; Elina Ikonen
Journal:  PLoS Biol       Date:  2021-01-22       Impact factor: 8.029

10.  Triacylglycerols sequester monotopic membrane proteins to lipid droplets.

Authors:  Lucie Caillon; Vincent Nieto; Pauline Gehan; Mohyeddine Omrane; Nicolas Rodriguez; Luca Monticelli; Abdou Rachid Thiam
Journal:  Nat Commun       Date:  2020-08-07       Impact factor: 14.919

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