Literature DB >> 34990233

Dense functional and molecular readout of a circuit hub in sensory cortex.

Cameron Condylis1,2, Abed Ghanbari3, Nikita Manjrekar3, Karina Bistrong3, Shenqin Yao4, Zizhen Yao4, Thuc Nghi Nguyen4, Hongkui Zeng4, Bosiljka Tasic4, Jerry L Chen1,2,3,5.   

Abstract

Although single-cell transcriptomics of the neocortex has uncovered more than 300 putative cell types, whether this molecular classification predicts distinct functional roles is unclear. We combined two-photon calcium imaging with spatial transcriptomics to functionally and molecularly investigate cortical circuits. We characterized behavior-related responses across major neuronal subclasses in layers 2 or 3 of the primary somatosensory cortex as mice performed a tactile working memory task. We identified an excitatory intratelencephalic cell type, Baz1a, that exhibits high tactile feature selectivity. Baz1a neurons homeostatically maintain stimulus responsiveness during altered experience and show persistent enrichment of subsets of immediately early genes. Functional and anatomical connectivity reveals that Baz1a neurons residing in upper portions of layers 2 or 3 preferentially innervate somatostatin-expressing inhibitory neurons. This motif defines a circuit hub that orchestrates local sensory processing in superficial layers of the neocortex.

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Year:  2022        PMID: 34990233      PMCID: PMC9255671          DOI: 10.1126/science.abl5981

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   63.714


  50 in total

1.  Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors:  Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

2.  Preferential inputs from cholecystokinin-positive neurons to the somatic compartment of parvalbumin-expressing neurons in the mouse primary somatosensory cortex.

Authors:  Hiroyuki Hioki; Jaerin Sohn; Hisashi Nakamura; Shinichiro Okamoto; Jungwon Hwang; Yoko Ishida; Megumu Takahashi; Hiroshi Kameda
Journal:  Brain Res       Date:  2018-05-21       Impact factor: 3.252

Review 3.  The neocortical circuit: themes and variations.

Authors:  Kenneth D Harris; Gordon M G Shepherd
Journal:  Nat Neurosci       Date:  2015-01-27       Impact factor: 24.884

4.  Demonstration of long-range GABAergic connections distributed throughout the mouse neocortex.

Authors:  Ryohei Tomioka; Keiko Okamoto; Takahiro Furuta; Fumino Fujiyama; Takuji Iwasato; Yuchio Yanagawa; Kunihiko Obata; Takeshi Kaneko; Nobuaki Tamamaki
Journal:  Eur J Neurosci       Date:  2005-03       Impact factor: 3.386

Review 5.  Activity-Regulated Transcription: Bridging the Gap between Neural Activity and Behavior.

Authors:  Ee-Lynn Yap; Michael E Greenberg
Journal:  Neuron       Date:  2018-10-24       Impact factor: 17.173

6.  Shared and distinct transcriptomic cell types across neocortical areas.

Authors:  Bosiljka Tasic; Zizhen Yao; Lucas T Graybuck; Kimberly A Smith; Thuc Nghi Nguyen; Darren Bertagnolli; Jeff Goldy; Emma Garren; Michael N Economo; Sarada Viswanathan; Osnat Penn; Trygve Bakken; Vilas Menon; Jeremy Miller; Olivia Fong; Karla E Hirokawa; Kanan Lathia; Christine Rimorin; Michael Tieu; Rachael Larsen; Tamara Casper; Eliza Barkan; Matthew Kroll; Sheana Parry; Nadiya V Shapovalova; Daniel Hirschstein; Julie Pendergraft; Heather A Sullivan; Tae Kyung Kim; Aaron Szafer; Nick Dee; Peter Groblewski; Ian Wickersham; Ali Cetin; Julie A Harris; Boaz P Levi; Susan M Sunkin; Linda Madisen; Tanya L Daigle; Loren Looger; Amy Bernard; John Phillips; Ed Lein; Michael Hawrylycz; Karel Svoboda; Allan R Jones; Christof Koch; Hongkui Zeng
Journal:  Nature       Date:  2018-10-31       Impact factor: 49.962

7.  Distinct learning-induced changes in stimulus selectivity and interactions of GABAergic interneuron classes in visual cortex.

Authors:  Adil G Khan; Jasper Poort; Angus Chadwick; Antonin Blot; Maneesh Sahani; Thomas D Mrsic-Flogel; Sonja B Hofer
Journal:  Nat Neurosci       Date:  2018-05-21       Impact factor: 24.884

8.  Learning-Related Plasticity in Dendrite-Targeting Layer 1 Interneurons.

Authors:  Elisabeth Abs; Rogier B Poorthuis; Daniella Apelblat; Karzan Muhammad; M Belen Pardi; Leona Enke; Dahlia Kushinsky; De-Lin Pu; Max Ferdinand Eizinger; Karl-Klaus Conzelmann; Ivo Spiegel; Johannes J Letzkus
Journal:  Neuron       Date:  2018-09-27       Impact factor: 17.173

9.  Barrel cortex VIP/ChAT interneurons suppress sensory responses in vivo.

Authors:  Amir Dudai; Nadav Yayon; Vitaly Lerner; Gen-Ichi Tasaka; Yair Deitcher; Karin Gorfine; Naomi Niederhoffer; Adi Mizrahi; Hermona Soreq; Michael London
Journal:  PLoS Biol       Date:  2020-02-06       Impact factor: 8.029

10.  Long-range population dynamics of anatomically defined neocortical networks.

Authors:  Jerry L Chen; Fabian F Voigt; Mitra Javadzadeh; Roland Krueppel; Fritjof Helmchen
Journal:  Elife       Date:  2016-05-24       Impact factor: 8.140

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  4 in total

Review 1.  What is a cell type and how to define it?

Authors:  Hongkui Zeng
Journal:  Cell       Date:  2022-07-21       Impact factor: 66.850

2.  A gene-expression axis defines neuron behaviour.

Authors:  Hongkui Zeng; Saskia E J de Vries
Journal:  Nature       Date:  2022-07       Impact factor: 69.504

3.  A transcriptomic axis predicts state modulation of cortical interneurons.

Authors:  Stéphane Bugeon; Joshua Duffield; Mario Dipoppa; Anne Ritoux; Isabelle Prankerd; Dimitris Nicoloutsopoulos; David Orme; Maxwell Shinn; Han Peng; Hamish Forrest; Aiste Viduolyte; Charu Bai Reddy; Yoh Isogai; Matteo Carandini; Kenneth D Harris
Journal:  Nature       Date:  2022-07-06       Impact factor: 69.504

4.  Dense functional and molecular readout of a circuit hub in sensory cortex.

Authors:  Cameron Condylis; Abed Ghanbari; Nikita Manjrekar; Karina Bistrong; Shenqin Yao; Zizhen Yao; Thuc Nghi Nguyen; Hongkui Zeng; Bosiljka Tasic; Jerry L Chen
Journal:  Science       Date:  2022-01-07       Impact factor: 63.714

  4 in total

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