| Literature DB >> 34977840 |
Manish Kumar1, Alok Kumar Thakur1, Payal Mazumder2, Keisuke Kuroda3, Sanjeeb Mohapatra4, Jörg Rinklebe5,6, Al Ramanathan7, Zeynep Cetecioglu8, Sharad Jain9, Vinay Kumar Tyagi9, Petros Gikas10, Sudip Chakraborty11, M Tahmidul Islam12, Arslan Ahmad13,14, Anil V Shah15, Arbind Kumar Patel1, Toru Watanabe16, Meththika Vithanage17, Kyle Bibby18, Masaaki Kitajima19,12, Prosun Bhattacharya12.
Abstract
Increased concern has recently emerged pertaining to the occurrence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in aquatic environment during the current coronavirus disease 2019 (COVID-19) pandemic. While infectious SARS-CoV-2 has yet to be identified in the aquatic environment, the virus potentially enters the wastewater stream from patient excretions and a precautionary approach dictates evaluating transmission pathways to ensure public health and safety. Although enveloped viruses have presumed low persistence in water and are generally susceptible to inactivation by environmental stressors, previously identified enveloped viruses persist in the aqueous environment from days to several weeks. Our analysis suggests that not only the surface water, but also groundwater, represent SARS-CoV-2 control points through possible leaching and infiltrations of effluents from health care facilities, sewage, and drainage water. Most fecally transmitted viruses are highly persistent in the aquatic environment, and therefore, the persistence of SARS-CoV-2 in water is essential to inform its fate in water, wastewater and groundwater and subsequent human exposure.Entities:
Keywords: COVID-19; Coronavirus; Groundwater; Pathways; Water
Year: 2020 PMID: 34977840 PMCID: PMC7456799 DOI: 10.1016/j.hazl.2020.100001
Source DB: PubMed Journal: J Hazard Mater Lett ISSN: 2666-9110
Similarity Index of SARS-CoV-2 with other viruses (non-enveloped and enveloped) which are detected in water bodies, stool and urine samples.
| Genome/Species | Virus | Similar Characteristics with SARS-CoV-2 (Davg = 120 nm) (Genome Size 26.4 – 31.7 kilobases) | Isoeletric points | Presence in different water bodies | Wastewater/stool samples | Major Diseases/Outbreaks | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| Diameter (Average) | Genome Type | Genome Size | River/Coastal | Lake/Urban Catchment | Groundwater | |||||
| Enteroviruses | Polioviruses | 30 nm | +ve sense, Single Strand (SS) RNA | 7440 bases | 6.9 (PV-1)22 | 62%1(California, 2000) | 29–76%3(Germany, 2002–03)3 | 23%10Wisconsin (2003–04) | – | Polio Outbreaks |
| Coxsackievirus | 30 nm | SS RNA | 7400 bases | 4.8 & 6.122 | HFMD Outbreak | |||||
| Echovirus | 24–30 nm | SS RNA | 7500 bases | 4.0–6.422 | Liver Failure, Mycocarditis | |||||
| Enetrovirus | 25–30 nm | +ve sense, SS RNA | 7200–8500 bases | 4.0–5.522 | Herpangina, Pleurodynia, Aseptic meningitis | |||||
| Hepevirus | HEV/HAV | 27–34 nm | +ve sense, single strand RNA | 7200 bases | 2.822 | 76%1(California, 2000), | 5–20%3(Germany, 2002–03) | – | – | Hepatitis E, Jaundice |
| Norovirus | Norovirus | 23–40 nm | +ve sense, single strand RNA | 7500 bases | 5.922 | 0%6(Florida, 2009) | 15–53%3(Germany, 2002–03) | 50%13(England, 2009) | – | Vomiting Diarrhea |
| Astrovirus | Astrovirus | 28–35 nm | +ve sense, single strand RNA | 6800–7900 bases | 24–42%3(Germany, 2002–03 | Diarrhea, Malaise, Nausea, Vomiting, fever | ||||
| Sapovirus | Sapovirus | 27–40 nm | +ve sense, single strand RNA | 7700 bases | – | – | – | – | Gastroenteritis | |
| Orthoreovirus | Orthoreovirus | 70–85 nm | Double strand RNA | 23,500 bases | 3.8 & 3.922 | – | – | Respiratory Tract Disease, Gastroenteritis | ||
| Rotavirus | Rotavirus | 76.5 nm | Double strand RNA | 37,100 bases | 8.022 | 50%9(Germany, 2010) | 3–24%3(Germany, 2002–03)0 | 4.8%15(Korea, 2007–08) | – | Diarrhoeaand Gastroenteritis |
| Adenovirus | Adenovirus | 90–100 nm | Double strand DNA | 26000–48000 bases | 4.522 | 52%1(California, 2000) | 20%3(Germany, 2002–03) | 50%13(England, 2009 | Respiratory Tract and Intestinal Tract | |
| Influenza A Virus | H1N1 | 80–120 nm | Single RNA | 13,500 bases | 6.5–7.022 | 40%18(Netherland, 2009–10) | 10%18(Influent)(Netherland, 200,910) | |||
| Coronavirus/Coronaviridae | SARS | Davg = 78 nm | +ve sense single strand RNA | 30,000 | 6.2423 | – | – | Present21(CNK/tap) | 50%19(stool) | Respiratory Problems, Severe pneumonia, Gastroenteritis |
| MERS | – | +ve sense single strand RNA | – | – | 103gc/c19(stool) | |||||
| Human | – | +ve sense single strand RNA | 27,500–30,700 | – | – | Present21(CNK/tap) | 2.3%19(stool) | Bronchitis, Acute Pneumonia, Respiratory Issues | ||
| Feline | – | – | – | – | – | Present21(CNK/Tap) | 7.2%20(BCoV, Calves stool)(Brazil, 2016–17) | Intestinal effects | ||
| TGEV(Transmissible Gastroenteritis Virus) | 100–150 nm | +ve sense single strand RNA | 28,600 | – | – | – | – | Epidemic Murine Illness | ||
| MHV (Murine Hepatitis Virus) | – | – | 31,357 | – | – | – | – | Diarrhea | ||
| Flavirvirus | Zika | 50 nm | +ve sense single strand RNA | 11,000 | – | – | – | – | 49%19(septic Tanks) | Zika |
| Dengue | 50 nm | +ve sense single strand RNA | 11,000 | – | – | – | – | 50%19(urine) | Dengue | |
| West Nile | 40–50 nm | +ve sense single strand RNA | 11,000 | – | – | – | – | 44%19(urine) | West nile Disease | |
Resource: Gibson, 2014, ‘–’ means ‘Not Available’,CNK-Concentration Not Known1Jiang and Chu, 2004, 2Fong and Lipp, 2005, 3Pusch et al., 2005, 4Xagoraraki et al., 2007, 5Albinana-Gimenez et al., 2009, 6Abdelzaher et al., 2010, 7Wong et al., 2009, 8Dong et al., 2010, 9Jurzik et al., 2010, 10Borchardt et al., 2007, 11Dorevitch et al., 2011, 12Aw and Gin, 2011, 13Charles et al., 2009, 14Gabrieli et al., 2009, 15Park et al., 2010, 16Ye et al., 2012, 17Maunula et al., 2012, 18Heijnen and Medema, 2011, 19Ye, 2018, 20Cruvinel et al., 2020, 21Kitajima et al., 2020. Non Enveloped (Enterovirus, Hepevirus, Norovirus, Rotavirus, Orthovirus, Sapovirus, Astrovirus, Adenovirus) and Enveloped (Influenza A Virus, Coronavirus, Flavivirus), 22Michen and Graule, 2010, 23Kumar, 2020.
Fig. 1Components of urban water cycle and probable pathway of the novel coronavirus in water environment.