| Literature DB >> 32649988 |
Paola Foladori1, Francesca Cutrupi2, Nicola Segata3, Serena Manara3, Federica Pinto3, Francesca Malpei4, Laura Bruni5, Giuseppina La Rosa6.
Abstract
SARS-CoV-2, the virus that causes COVID-19, has been found in the faeces of infected patients in numerous studies. Stool may remain positive for SARS-CoV-2, even when the respiratory tract becomes negative, and the interaction with the gastrointestinal tract poses a series of questions about wastewater and its treatments. This review aims to understand the viral load of SARS-CoV-2 in faeces and sewage and its fate in wastewater treatment plants (WWTPs). The viral load in the faeces of persons testing positive for SARS-CoV-2 was estimated at between 5·103 to 107.6 copies/mL, depending on the infection course. In the sewerage, faeces undergo dilution and viral load decreases considerably in the wastewater entering a WWTP with a range from 2 copies/100 mL to 3·103 copies/mL, depending on the level of the epidemic. Monitoring of SARS-CoV-2 in sewage, although no evidence of COVID-19 transmission has been found via this route, could be advantageously exploited as an early warning of outbreaks. Preliminary studies on WBE seem promising; but high uncertainty of viral loads in wastewater and faeces remains, and further research is needed. The detection of SARS-CoV-2 in sewage, based on RNA sequences and RT-PCR, requires a shared approach on sample pre-treatment and on-site collection to ensure comparable results. The finding of viral RNA in stools does not imply that the virus is viable and infectious. Viability of CoVs such as SARS-CoV-2 decreases in wastewater - due to temperature, pH, solids, micropollutants - but high inactivation in WWTPs can be obtained only by using disinfection (free chlorine, UVC light). A reduction in the quantity of disinfectants can be obtained by implementing Membrane-Bioreactors with ultrafiltration to separate SARS-CoV-2 virions with a size of 60-140 nm. In sludge treatment, thermophilic digestion is effective, based on the general consensus that CoVs are highly sensitive to increased temperatures.Entities:
Keywords: Coronavirus; Faeces; Outbreak; SARS-CoV-2; Sewage; Wastewater treatment
Mesh:
Substances:
Year: 2020 PMID: 32649988 PMCID: PMC7311891 DOI: 10.1016/j.scitotenv.2020.140444
Source DB: PubMed Journal: Sci Total Environ ISSN: 0048-9697 Impact factor: 7.963
Fig. 1Virion structure of SARS-CoV/SARS-CoV-2 (permission obtained from Philippe Le Mercier, ViralZone, SIB Swiss Institute of Bioinformatics).
Gastrointestinal (GI) symptoms, diarrhoea and viral RNA positivity in stools of patients infected with SARS-CoV-2.
| Reference | Patients | GI symptoms | Diarrhoea | Viral RNA posit. in stool | Other findings | |||
|---|---|---|---|---|---|---|---|---|
| No. | No. | % | No. | % | No. | % | ||
| ( | 153 | – | – | – | – | 44/153 | 29 | live SARS-CoV-2 was observed in the stool sample from 2 patients without diarrhoea the total number is referred to specimens instead of patients scarcity of detailed clinical information available |
| ( | 65 | 42/65 | 64.6 | 31/65 | 47.7 | 22/42 (52.4%) with positive faeces and GI symptoms 9/23 (39.1%) with positive faeces but without GI symptoms GI tract may be a target organ of SARS-CoV-2 | ||
| 95 | 58/95 | 61 | 24.2 | |||||
| ( | 73 | 39/73 | 53.4 | duration time of positive stool from 1 to 12 days 23.3% of patients have positive results in stool after negative results in respiratory samples ACE2 protein (cell receptor) is abundantly expressed in the glandular cells of gastric, duodenal, and rectal epithelia, supporting the entry of SARS-CoV-2 into the host cells. | ||||
| ( | 10 | 3/10 | 30 | 3/10 | 30 | 8/10 | 80 | ten paediatric cases, only 3 with diarrhoea and no other GI symptoms are indicated positive cases on rectal swabs even after nasopharyngeal testing proves negative |
| ( | 74 | 23/74 | 31 | 41/74 | 55 | GI symptoms not associated with faecal sample positivity (p = 0.45); disease severity not associated with duration of faecal sample positivity (p = 0.60); faeces remained positive for a mean of 11.2 days after the respiratory tract samples became negative (up to 5 weeks) the virus may be actively replicating in the GI tract | ||
| ( | 23 | 10/12 | 83.3 | Median duration of virus shedding was 22 days for the faeces Intestinal samples recommended for diagnosis of COVID-19, especially for monitoring the relapse of discharged patients | ||||
| ( | 59 | 15/59 | 25 | 13/59 | 22 | 9/59 | 15.3 | |
| ( | 4243 | – | 17.6 | – | 12.5 | – | 48.1 | virus RNA found even in stool collected after respiratory samples tested negative GI symptoms may be under-reported in some studies. |
| ( | 9 | 1/9 | 11 | profiles of viral RNA during the course of the disease peak of viral RNA during the first week of symptoms stool samples remained RNA-positive over 3 weeks without symptoms | ||||
| ( | 42 | 8 | 19 | 7 | 17 | 28 | 67 | patients tested positive in stool: 21% have diarrhoea. 64.3% of patients tested positive in stool remained positive after the pharyngeal swabs turned negative |
| ( | 10 | 8 | 80 | diarrhoea (80%) and nausea (50%) were common symptoms in this cohort of patients both faecal and respiratory specimens should be tested to aid discharge decision before the role of viral RNA shedding in stool is clarified. | ||||
| ( | 1099 | 55/1099 | 5 | 42/1099 | 3.8 | data from mainland China through January 29, 2020. occurrence of diarrhoea is one of the lowest in the literature | ||
| ( | 204 | 103/204 | 50.5 | 35/204 | 17 | importance of including symptoms like diarrhoea to diagnose COVID-19 early | ||
SARS-CoV-2 loads and viral RNA Ct values in faecal samples detected positive by real-time RT-PCR.
| Reference | No. patients | SARS-CoV-2 load (copies/mL) | Other results |
|---|---|---|---|
| ( | 9 | >107 (peak) | viral load highly variable, depending on the day of sampling post onset. peak during the first week from onset |
| ( | 23 | 5623 (mean) | faecal samples detected by rRT-PCR targeting ORF1ab, N and S genes Ct values of ORF1ab gene from ⁓25 to 43 Negative samples for Ct value of 43 (limit of detection) Ct values of 37.6, 32.64, 29.22, and 25.77 corresponding to 1 × 103, 1 × 104, 1 × 105, and 1 × 106 copies/mL, respectively. |
| ( | 59 | 104.7 (median) | 105.1 copies/mL with diarrhoea 103.9 copies/mL without diarrhoea |
| ( | 153 | <2.6·104 copies/mL | mean Ct = 31.4 ± 5.1 |
| ( | 41 | faecal viral RNA Ct values in 41 patients with positive faeces Ct values of the targeted genes RdRp, N, E were 30.33 ± 8.12, 26.85 ± 11.42 and 28.42 ± 6.79, respectively. | |
| ( | 10 | 2·103–2·107 (estimated by us) | Ct values of Orf1ab and N genes on real-time RT–PCR in rectal swabs from ⁓23 to 37 Ct profiles during 1–27 d since admission are available Ct values of 32.04, 28.81, 25.14 and 21.54 corresponding to 5.27 × 104, 5.27 × 105, 5.27 × 106 and 5.27 × 107 copies/mL |
Available methods for the concentration of SARS-CoV-2 from wastewater and assays for PCR detection.
| Reference | Concentration steps | PCR assays |
|---|---|---|
| ( | Filtration through 0.22 μm membrane to remove bacterial cells and debris (initial tests revealed little to no viral RNA on filters) PEG precipitation, centrifugation at 12,000 | US CDC rRT-PCR primer/probe sets targeting three loci of the nucleocapsid protein gene N (CDC, Centers for Disease Control and Prevention) Negative controls: samples from the same wastewater treatment facility taken before the first reported COVID-19 case The rRT-PCR data analysis threshold to call a positive sample included all samples with Ct below 40 |
| ( | Method A: Direct RNA extraction from the electronegative 0.45 μm filter 90 mm diameter ( Method B: Centrifugation at 4750 | RT-qPCR assays were applied in accordance with the recent literature ( |
| ( | Centrifugation step at 4654 Supernatant filtered with centrifugal ultrafiltration with a cut-off of 10 kDa at 1500 g for 15 min | Four primer sets were selected: the N1, N2, N3 sets (US CDC) targetings different regions of the nucleocapsid (N) gene and the set against the envelope protein (E) gene ( |
| ( | Ultracentrifugation at 200,000 | PCR inhibitor removal resins were used. The RT-qPCR primers were designed within the viral E gene Positive results were confirmed by amplification of a region from the viral RNA dependent-RNA polymerase ( |
| ( | Adaptation of the standard WHO protocol ( initial centrifugation of wastewater to pellet the solids mixing of clarified wastewater with dextran and polyethylene glycol (PEG) and left overnight at 4 °C in a separation funnel concentrate was added to the pellet | RNAs were tested for the presence of SARS-CoV-2 using three different PCR assays: a broad range of PCR for Coronavirus detection targeting the ORF1ab ( a newly designed primer set specific to SARS-CoV-2 a published nested RT-PCR for SARS-CoV-2 targeting the spike region ( |
Concentration method with Al(OH)3 adsorption-precipitation (1 part 0.9 N AlCl3 solution to 100 parts of sample. Incubated for 15 min at room temperature using an orbital shaker) Centrifugation at 1700 Resuspension of pellet in beef extract and centrifugation at 1900 Pellet resuspension in PBS | RT-qPCR diagnostic panel assays validated by the US Centers for Disease Control and Prevention (CDC, 2020). The first version of the kit with three sets of oligonucleotide primers and probes was used to target three different SARS-CoV-2 regions of the nucleocapsid (N) gene | |
| Authors of this study | PEG precipitation | Bosphore Novel Coronavirus (2019-nCoV) Detection Kit (Anatolia Geneworks) targeting positive samples included all samples with Ct below 40, according to ( |
Type of raw wastewater collected in different studies and concentrations of SARS-CoV-2 in raw wastewater (n.a. = not available).
| Reference | Geographical area | Points of raw wastewater sampling | No. of samples | SARS-CoV-2 load |
|---|---|---|---|---|
| Massachusetts (USA) | A major WWTP (split into 2 catchment areas: Southern and Northern). | 14 (4 samples before the first known US SARS-CoV-2 case + 5 samples in March 2020) | ~100 copies/mL lowest values of ~10 copies/mL. | |
| South-East Queensland (Australia) | 1 suburban pumping station 2 WWTPs representing urban catchments | 2 | 1.9 and 12 copies/100 mL of untreated wastewater | |
| ( | Netherlands | sewage of 6 cities Amsterdam Airport Schiphol | 24 | Detected, load n.a. |
| ( | Paris (France) | 3 WWTPs of the Parisian area | 23 | Range 50–3·103 eq/mL (calculated by us; eq/mL = equivalent viral genomes per mL) |
| ( | Milan and Rome (Italy). | 2 WWTPs in Milan 1 WWTP in Rome that received pipelines from two different districts of the city | 12 | Detected, load n.a. |
| Region of Murcia (Spain) | 6 WWTPs serving the major municipalities | 42 | 5.4 ± 0.2 log10 copies/L on average (2.5·102 copies/mL, recalculated) |
Studies that report quantification of SARS-CoV-2 in treated wastewater (n.a. = not available).
| Reference | Geographical area of WWTPs | Configuration of WWTPs | Type and No. of samples | SARS-CoV-2 load |
|---|---|---|---|---|
| ( | 3 WWTPs of the Parisian area (France) | n.a. | 8 samples of treated wastewater | From the limit of detection (1 eq/mL) to the maximum value of 102 eq/mL (eq/mL = equivalent viral genomes per mL) |
| 6 WWTPs serving the major municipalities in the region of Murcia (Spain) | Secondary treatment based on activated sludge | 18 samples of secondary effluents | 2 out of 18 samples were positive (1 with 5.40 log10 copies/L and 1 below quantification limit). | |
| Tertiary treatment based on: coagulation, flocculation in 3 plants sand filtration in 3 plants disinfection in all plants (UV or NaClO) | 12 samples of tertiary effluents | All negative |
Factors of influence and treatments that contribute to a significant reduction of SARS-CoV-2 or CoVs in WWTPs.
| Factor of influence | Experimental observations about SARS-CoV-2 or derived from other CoVs | Principles, mechanisms and laws | |
|---|---|---|---|
| Environmental factors affecting stability | Stability in water is affected by temperature | at 4 °C SARS-CoV-2 is highly stable, with an around 0.7 log-unit reduction of infectious titre after 14 d ( at 20 °C CoVs remain infectious for 2 d, when seeded in sewage ( at 70 °C for 5 min, SARS-CoV-2 is inactivated ( | The decline in infectivity of CoVs (surrogates for SARS-CoV) followed a typical first-order kinetic at rate of 1.5–2.0 log per week at 25 °C, while at 4 °C the rate was slower and approximately 0.2–0.3 log per week ( |
| Stability in water is affected by contaminants and solids | the time required for CoVs (surrogates for SARS-CoV) infectivity reduction in sewage was approximately half that in reagent-grade water ( a ~ 2 log reduction of CoV was obtained after 2 d in primary effluent in comparison to 7–8 d in tap water ( CoV declined rapidly in wastewater, with a reduction of 99.9 in 2–4 d ( | physicochemical constituents in sewage may accelerate the inactivation processes T90 of enveloped viruses is reduced in highly contaminated matrix (demonstrated by models, | |
| Stability in aerosol | the half-life of SARS-CoV-2 in aerosol was approximately 1.1 h, very similar to SARS-CoV-1 ( during the outbreak of SARS in Hong Kong the SARS viral aerosols in the building plumbing were drawn into a large apartment complex (Amoy Gardens) primarily through the air ( To date there is no evidence that the COVID-19 virus has been transmitted via sewerage systems and wastewater treatments, but for a precautionary principle a certain caution should be taken | WHO ( workers wear PPE that protect from the exposure to pathogens including SARS-CoV-2 ( | |
| Stages of treatment in WWTPS | Treatment by membrane biological reactors | 5.5, 5.1 and 3.9 log reduction of human adenovirus, human enterovirus and norovirus, respectively was obtained in MBRs with absolute pore size of 0.1 μm ( | ultrafiltration (>0.01 μm), is advised in virus separation microfiltration (>0.1 μm) is partially efficient and may require a further step of disinfection |
| Treatment by disinfection with free chlorine or chlorine dioxide | SARS-CoV in wastewater is more susceptible to sodium hypochlorite and chlorine dioxide than to control the virus, the dosage of hypochlorous acid (free chlorine) should ensure a free residue chlorine over 0.5 ppm, to confirm that chlorine has not been completely depleted and ensure complete inactivation of SARS-CoV ( Free residue chlorine over 2.2 mg/L is needed for chlorine dioxide for complete inactivation of SARS-CoV (while | Inactivation is due to the reaction with proteins in the nucleocapsid instead of genome or membrane lipids ( | |
| Treatment by UV disinfection (UVC light) | Enveloped viruses do not seem to have a higher susceptibility to UVC light than non-enveloped viruses ( | Inactivation primarily targets the genome, while lipid membrane do not protect viruses from the radiation ( | |
| Treatment by primary and secondary settling | 26% of enveloped viruses adsorbed to solids, compared to 6% of nonenveloped ( a significant part of CoVs, is likely to be present in the primary or secondary sludge inactivation in sludge is similarly as in wastewater (3 log in 2–4 d) ( | The hydrophobicity of the viral envelope makes enveloped viruses less soluble in water and they tend to adhere to solids and to concentrate in sludge ( | |
| Treatment by mesophilic and thermophilic anaerobic digestion | Human CoV were detected in sludges pre and post anaerobic digestion ( SARS-CoVs infectivity is lost at 56 °C for 90 min (temperature of thermophilic anaerobic digestion) ( in anaerobic digestion at 28 °C, poliovirus lose infectivity and ammonia may act as a virucidal agent ( | higher inactivation of CoVs is expected in anaerobic digestion because CoVs are much more sensitive to warm temperature than poliovirus thermophilic aerobic digestion is much more effective against nonenveloped viruses than mesophilic digestion ( |