| Literature DB >> 34973585 |
Elena Velichko1, Faridoddin Shariaty2, Mahdi Orooji3, Vitalii Pavlov1, Tatiana Pervunina4, Sergey Zavjalov1, Razieh Khazaei5, Amir Reza Radmard5.
Abstract
The efforts made to prevent the spread of COVID-19 face specific challenges in diagnosing COVID-19 patients and differentiating them from patients with pulmonary edema. Although systemically administered pulmonary vasodilators and acetazolamide are of great benefit for treating pulmonary edema, they should not be used to treat COVID-19 as they carry the risk of several adverse consequences, including worsening the matching of ventilation and perfusion, impaired carbon dioxide transport, systemic hypotension, and increased work of breathing. This study proposes a machine learning-based method (EDECOVID-net) that automatically differentiates the COVID-19 symptoms from pulmonary edema in lung CT scans using radiomic features. To the best of our knowledge, EDECOVID-net is the first method to differentiate COVID-19 from pulmonary edema and a helpful tool for diagnosing COVID-19 at early stages. The EDECOVID-net has been proposed as a new machine learning-based method with some advantages, such as having simple structure and few mathematical calculations. In total, 13 717 imaging patches, including 5759 COVID-19 and 7958 edema images, were extracted using a CT incision by a specialist radiologist. The EDECOVID-net can distinguish the patients with COVID-19 from those with pulmonary edema with an accuracy of 0.98. In addition, the accuracy of the EDECOVID-net algorithm is compared with other machine learning methods, such as VGG-16 (Acc = 0.94), VGG-19 (Acc = 0.96), Xception (Acc = 0.95), ResNet101 (Acc = 0.97), and DenseNet20l (Acc = 0.97).Entities:
Keywords: COVID-19; CT images; Computer-aided detection system (CADs); Lung CT scans; Machine learning; Pulmonary edema
Mesh:
Year: 2021 PMID: 34973585 PMCID: PMC8712746 DOI: 10.1016/j.compbiomed.2021.105172
Source DB: PubMed Journal: Comput Biol Med ISSN: 0010-4825 Impact factor: 4.589
Fig. 1Flowchart of this study.
Demographic characteristics of data.
| Characteristics | COVID-19 | Edema | P-value* |
|---|---|---|---|
| Age (Mean ± SD) | 50.22 ± 10.85 | 61.45 ± 15.04 | |
| Number of Females (Percentage) | 113 (44.44%) | 67 (40.70%) | 0.600 |
| Number of Males (Percentage) | 141 (55.56%) | 96 (59.30%) | 0.600 |
Fig. 2Slices showing disease symptoms, selected by radiologist.
Fig. 3Heatmap showing expression values of radiomic features for COVID-19.
Fig. 4Architecture of EDECOVID-net.
Results of proposed EDECOVID-net.
| Accuracy | Sensitivity | Specificity | PPV | NPV | |
|---|---|---|---|---|---|
| EDECOVID-net | 0.98 | 0.98 | 0.98 | 0.98 | 0.98 |
Fig. 5ROC plots of used deep networks.
Fig. 6Radar plot for individual ten networks and radiologist on validating dataset.
Comparison of results from the used methods.
| Precision | Recall | F-Score | ||
|---|---|---|---|---|
| EDECOVID-net | COVID-19 | 0.99 | 0.97 | 0.98 |
| Edema | 0.98 | 0.99 | 0.98 | |
| Xception | COVID-19 | 0.93 | 0.93 | 0.93 |
| Edema | 0.95 | 0.95 | 0.95 | |
| ResNet101 | COVID-19 | 0.97 | 0.95 | 0.96 |
| Edema | 0.96 | 0.98 | 0.97 | |
| VGG-16 | COVID-19 | 0.91 | 0.94 | 0.93 |
| Edema | 0.96 | 0.93 | 0.95 | |
| VGG-19 | COVID-19 | 0.98 | 0.92 | 0.95 |
| Edema | 0.94 | 0.99 | 0.96 | |
| DenseNet201 | COVID-19 | 0.97 | 0.97 | 0.96 |
| Edema | 0.97 | 0.98 | 0.97 |
Comparison of results from the used methods.
| Accuracy | Sensitivity | Specificity | PPV | NPV | |
|---|---|---|---|---|---|
| EDECOVID-net | 0.98 | 0.98 | 0.98 | 0.98 | 0.98 |
| VGG-16 | 0.94 | 0,91 | 0,96 | 0.94 | 0.96 |
| VGG-19 | 0.96 | 0.98 | 0.94 | 0.92 | 0.94 |
| Xception | 0.95 | 0.99 | 0.93 | 0.89 | 0.93 |
| DenseNet201 | 0.97 | 0.97 | 0.97 | 0.95 | 0.97 |
| ResNet101 | 0.97 | 0.98 | 0.96 | 0.95 | 0.96 |
| EDECOVID-net (without pre-processing) | 0,93 | 0,92 | 0,94 | 0.95 | 0.96 |