| Literature DB >> 34969859 |
Salima Bahri1, Robert Silvers1,2, Brian Michael1, Kristaps Jaudzems3, Daniela Lalli3, Gilles Casano4, Olivier Ouari4, Anne Lesage3, Guido Pintacuda3, Sara Linse5, Robert G Griffin6.
Abstract
Several publications describing high-resolution structures of amyloid-β (Aβ) and other fibrils have demonstrated that magic-angle spinning (MAS) NMR spectroscopy is an ideal tool for studying amyloids at atomic resolution. Nonetheless, MAS NMR suffers from low sensitivity, requiring relatively large amounts of samples and extensive signal acquisition periods, which in turn limits the questions that can be addressed by atomic-level spectroscopic studies. Here, we show that these drawbacks are removed by utilizing two relatively recent additions to the repertoire of MAS NMR experiments-namely, 1H detection and dynamic nuclear polarization (DNP). We show resolved and sensitive two-dimensional (2D) and three-dimensional (3D) correlations obtained on 13C,15N-enriched, and fully protonated samples of M0Aβ1-42 fibrils by high-field 1H-detected NMR at 23.4 T and 18.8 T, and 13C-detected DNP MAS NMR at 18.8 T. These spectra enable nearly complete resonance assignment of the core of M0Aβ1-42 (K16-A42) using submilligram sample quantities, as well as the detection of numerous unambiguous internuclear proximities defining both the structure of the core and the arrangement of the different monomers. An estimate of the sensitivity of the two approaches indicates that the DNP experiments are currently ∼6.5 times more sensitive than 1H detection. These results suggest that 1H detection and DNP may be the spectroscopic approaches of choice for future studies of Aβ and other amyloid systems.Entities:
Keywords: 1H detection; amyloid β1-42; dynamic nuclear polarization; magic-angle spinning
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Year: 2022 PMID: 34969859 PMCID: PMC8740738 DOI: 10.1073/pnas.2114413119
Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN: 0027-8424 Impact factor: 12.779
Fig. 1.High-resolution 1H-detected spectra recorded on fully protonated U-13C,15N-labeled M0-Aβ1-42 at 111.111 kHz MAS. (Top) 2D 13C-1H CP-HSQC; (Bottom) 2D 15N-1H CP-HSQC.
Fig. 2.Representative restraints from the (A) 3D (H)NHH, (H)CHH and (B) (H)C(HH)CH spectra that show long-range 1H-1H contacts corresponding to the intramolecular structure of M0-Aβ1-42, highlighted in red. Asterisks mark diagonal peaks. (A) The NHH and CHH experiments establish contacts between F20H and I32γ12 and A30α, between A30α and F20ζ F19β3 and I42δ1, and from F19α to I32γ2/γ12/δ1. (B) The CCH experiments establish contacts between G33α and V36β and V36γ1 and between I41β and G29α. (C) Display of intramolecular contacts found in the spectra shown in Fig. 3 on the lowest energy NMR structure of M0Aβ1-42 (Protein Data Bank ID 5kk3) (28). The contacts illustrated in this figure are listed in the legend for Fig. 3.
Fig. 3.(A) DNP enhanced 13C spectra of 1,3-13C2/2-13C/15N-labeled M0Aβ1-42 illustrating and enhancement of ε = 22 using (B) bis-nitroxide polarizing agent M-TinyPol. (C) DNP-enhanced 13C-13C CORD-RFDR spectra of 1,3-13C2/2-13C/15N-labeled M0Aβ1-42. The resolution in the spectrum is comparable to that obtained at ambient temperatures, ∼0.6 ppm as indicated for I31Cβ-Cα. In red we show the long-range contacts that correspond to the intramolecular monomer structure of the fibril. (D) DNP-enhanced NCO and NCA (Right) spectra acquired using M-TinyPol as the polarizing agent. ωr/2π = 40 kHz and T = 115 K.
Fig. 4.Selected cross-sections from DNP-enhanced NCOCX (blue) and NCACX (red) spectra of 1,3-13C2/2-13C/15N-labeled M0-Aβ1-42. Green circles indicate signals that reflect the interdimer contacts and the parallel-in-register arrangement of the fibrils. Asterisks mark diagonal peaks.