| Literature DB >> 34940083 |
Giorgio Russo1, Alessandro Stefano1, Pierpaolo Alongi2, Albert Comelli1,3, Barbara Catalfamo2,4, Cristina Mantarro2,4, Costanza Longo2,3, Roberto Altieri5,6, Francesco Certo5,6, Sebastiano Cosentino7, Maria Gabriella Sabini7, Selene Richiusa1, Giuseppe Maria Vincenzo Barbagallo5,6, Massimo Ippolito7.
Abstract
BACKGROUND/AIM: Nowadays, Machine Learning (ML) algorithms have demonstrated remarkable progress in image-recognition tasks and could be useful for the new concept of precision medicine in order to help physicians in the choice of therapeutic strategies for brain tumours. Previous data suggest that, in the central nervous system (CNS) tumours, amino acid PET may more accurately demarcate the active disease than paramagnetic enhanced MRI, which is currently the standard method of evaluation in brain tumours and helps in the assessment of disease grading, as a fundamental basis for proper clinical patient management. The aim of this study is to evaluate the feasibility of ML on 11[C]-MET PET/CT scan images and to propose a radiomics workflow using a machine-learning method to create a predictive model capable of discriminating between low-grade and high-grade CNS tumours.Entities:
Keywords: brain tumours; machine learning; nuclear medicine; positron emission tomography computed tomography; radiomics
Mesh:
Year: 2021 PMID: 34940083 PMCID: PMC8700249 DOI: 10.3390/curroncol28060444
Source DB: PubMed Journal: Curr Oncol ISSN: 1198-0052 Impact factor: 3.677
Characteristics of population.
| Histological Diagnosis | WHO Grade | Number |
|---|---|---|
| Glioblastoma | IV | 33 |
| Anaplastic astrocytoma | III | 6 |
| Diffuse astrocytoma | II | 5 |
| Oligodendroglioma | II | 6 |
| Pilocytic astrocytoma | I | 3 |
| Ganglioglioma | I | 1 |
| Meningioma | I | 2 |
Figure 1The radiomics workflow of the study. (a) PET image with lesion segmentation based on the thresholding method (see Section 2.1). (b) Some examples of the 44 features extracted using LifeX software, such as kurtosis, skewness, entropy and two textural features in the form of matrix (see Section 2.2), (c) Feature selection using a mixed descriptive-inferential sequential approach (see Section 2.2.3), (d) Representative figure of biplanar feature classification (low and high tumour grade) using the discriminant analysis as the supervised classifier. Specifically, a set of labelled instances (low and high tumour grade) were used for training purpose. Successively, the classifier was used to predict the label in the test set, where instances were without corresponding labels (see Section 2.2.4).
Figure 2Initial user input and result of segmentation (Example patient).
Figure 3Illustration of volume segmentation (fixed ROI in purple vs. VOI in yellow).
Relevant features using the fixed ROI. NGLDM: neighbourhood grey-level different matrix; GLZLM LZLGE: grey-level zone length matrix long-zone low grey-level emphasis; GLRLM LRLGE: gray level run length matrix long run low grey-level emphasis; CONV RIM: Conventional ROI Intensity Mean.
| Tomograph | Features | |
|---|---|---|
| All patients | NGLDM Busyness | 0.1615 |
| GLZLM LZLGE | 0.3207 | |
| GE | GLRLM LRLGE | 0.05 |
| GLZLM LZLGE | 0.137 | |
| SIEMENS | Histogram Skewness | 0.0136 |
| CONV RIM SUV Volume | 0.0136 |
Relevant features using the VOI. GLRLM LRLGE: Gray Level Run Length Matrix Long Run Low Gray-Level Emphasis; LGRE: Low Gray-level Run Emphasis; GLCM: Grey Level Co-occurrence Matrix.
| Tomograph | Features | |
|---|---|---|
| All patients | Shape Sphericity | 0.0314 |
| Shape Compacity | 0.0215 | |
| Histogram Kurtosis | 0.0232 | |
| GE | GLRLM LRLGE | 0.0481 |
| GLRLM LGRE | 0.117 | |
| SIEMENS | GLCM Correlation | 0.00036 |
| Shape Compacity | 0.0014 |
Performance values of the predictive model for Fixed ROI.
| Tomograph | Sensitivity | Specificity | Accuracy | AUC (95%CI) |
|---|---|---|---|---|
| All patients | 41.17% | 63.60% | 57.25% | 58.51% |
| GE | 28.52% | 88.47% | 71.64% | |
| SIEMENS | 76.67% | 71.81% | 72.88% |
Performance values of the predictive model for VOI.
| Tomograph | Sensitivity | Specificity | Accuracy | AUC (95%CI) |
|---|---|---|---|---|
| All patients | 52.44% | 76.62% | 70.31% | 64.13% |
| GE | 71.76% | 83.76% | 80.51% | |
| SIEMENS | 86.67% | 84.86% | 84.98% |
Figure 4ROC curve for fixed ROI (SIEMENS patients’ group).
Figure 5ROC curve for VOI (SIEMENS patients’ group).