Literature DB >> 34937073

Biophysical and in silico characterization of NrtA: a protein-based host for aqueous nitrate and nitrite recognition.

Ke Ji1, Kiheon Baek1, Weicheng Peng1,2, Kevin A Alberto1, Hedieh Torabifard1, Steven O Nielsen1, Sheel C Dodani1.   

Abstract

Nitrate and nitrite are key components of the global nitrogen cycle. As such, Nature has evolved proteins as biological supramolecular hosts for the recognition, translocation, and transformation of both nitrate and nitrite. To understand the supramolecular principles that govern these anion-protein interactions, here, we employ a hybrid biophysical and in silico approach to characterize the thermodynamic properties and protein dynamics of NrtA from the cyanobacterium Synechocystis sp. PCC 6803 for the recognition of nitrate and nitrite.

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Year:  2022        PMID: 34937073      PMCID: PMC9197583          DOI: 10.1039/d1cc05879g

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.065


  41 in total

Review 1.  Nitrate in 2020: Thirty Years from Transport to Signaling Networks.

Authors:  Elena A Vidal; José M Alvarez; Viviana Araus; Eleodoro Riveras; Matthew D Brooks; Gabriel Krouk; Sandrine Ruffel; Laurence Lejay; Nigel M Crawford; Gloria M Coruzzi; Rodrigo A Gutiérrez
Journal:  Plant Cell       Date:  2020-03-13       Impact factor: 11.277

2.  Artificial receptors for nitrate: a comprehensive overview.

Authors:  Ranjan Dutta; Pradyut Ghosh
Journal:  Chem Commun (Camb)       Date:  2015-06-04       Impact factor: 6.222

Review 3.  Entropy-enthalpy compensation: role and ramifications in biomolecular ligand recognition and design.

Authors:  John D Chodera; David L Mobley
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

4.  Identification of mNeonGreen as a pH-Dependent, Turn-On Fluorescent Protein Sensor for Chloride.

Authors:  Jasmine N Tutol; Hiu C Kam; Sheel C Dodani
Journal:  Chembiochem       Date:  2019-05-08       Impact factor: 3.164

5.  Interactions between Hofmeister anions and the binding pocket of a protein.

Authors:  Jerome M Fox; Kyungtae Kang; Woody Sherman; Annie Héroux; G Madhavi Sastry; Mostafa Baghbanzadeh; Matthew R Lockett; George M Whitesides
Journal:  J Am Chem Soc       Date:  2015-03-17       Impact factor: 15.419

6.  The nitrate/nitrite ABC transporter of Phormidium laminosum: phosphorylation state of NrtA is not involved in its substrate binding activity.

Authors:  Daniel Nagore; Begoña Sanz; Javier Soria; Marta Llarena; María J Llama; Juan J Calvete; Juan L Serra
Journal:  Biochim Biophys Acta       Date:  2006-01-06

7.  Principal component analysis: a method for determining the essential dynamics of proteins.

Authors:  Charles C David; Donald J Jacobs
Journal:  Methods Mol Biol       Date:  2014

Review 8.  The Molecular Origin of Enthalpy/Entropy Compensation in Biomolecular Recognition.

Authors:  Jerome M Fox; Mengxia Zhao; Michael J Fink; Kyungtae Kang; George M Whitesides
Journal:  Annu Rev Biophys       Date:  2018-03-05       Impact factor: 12.981

9.  Anion binding to ubiquitin and its relevance to the Hofmeister effects.

Authors:  Wei Yao; Kaiyu Wang; Aide Wu; Wayne F Reed; Bruce C Gibb
Journal:  Chem Sci       Date:  2020-11-04       Impact factor: 9.825

10.  Molecular basis of nitrate uptake by the plant nitrate transporter NRT1.1.

Authors:  Joanne L Parker; Simon Newstead
Journal:  Nature       Date:  2014-02-26       Impact factor: 49.962

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