| Literature DB >> 34928995 |
Paula Benny1, Hyeong Jun Ahn2, Janet Burlingame1, Men-Jean Lee1, Corrie Miller1, John Chen2, Johann Urschitz3.
Abstract
AIMS: Genome-wide association studies have shown an increased risk of type-2-diabetes (T2DM) in patients who carry single nucleotide polymorphisms in several genes. We investigated whether the same gene loci confer a risk for gestational diabetes mellitus (GDM) in women from Hawaii, and in particular, Pacific Islander and Filipino populations.Entities:
Mesh:
Substances:
Year: 2021 PMID: 34928995 PMCID: PMC8687569 DOI: 10.1371/journal.pone.0261137
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Clinical characteristics of participants according to ethnic group.
| Ethnicity | Variable | Control | GDM |
| ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| N | Mean | Std Dev | Min | Max | N | Mean | Std Dev | Min | Max | |||
|
|
| 395 | 30.5 | 5.7 | 18.0 | 44.0 | 162 | 31.7 | 5.5 | 19.0 | 42.0 |
|
|
| 395 | 24.2 | 4.4 | 15.4 | 43.5 | 155 | 25.9 | 5.2 | 15.9 | 44.6 |
| |
|
| 395 | 2.8 | 1.7 | 1.0 | 13.0 | 162 | 2.8 | 1.6 | 1.0 | 8.0 | 0.930 | |
|
| 395 | 1.2 | 1.1 | 0.0 | 6.0 | 162 | 1.4 | 1.3 | 0.0 | 5.0 |
| |
|
|
| 142 | 35.0 | 4.8 | 19.0 | 45.0 | 58 | 35.8 | 5.0 | 27.0 | 50.0 | 0.300 |
|
| 141 | 22.4 | 3.6 | 15.7 | 43.5 | 51 | 24.9 | 3.8 | 17.7 | 34.5 |
| |
|
| 142 | 2.5 | 1.5 | 1.0 | 7.0 | 58 | 3.2 | 1.9 | 1.0 | 7.0 |
| |
|
| 142 | 0.9 | 0.9 | 0.0 | 4.0 | 58 | 0.9 | 1.1 | 0.0 | 4.0 | 0.950 | |
|
|
| 197 | 28.0 | 5.9 | 18.0 | 43.0 | 71 | 30.0 | 6.1 | 19.0 | 46.0 |
|
|
| 192 | 29.4 | 6.2 | 16.5 | 50.0 | 56 | 32.7 | 7.1 | 18.3 | 47.8 |
| |
|
| 197 | 3.4 | 2.2 | 1.0 | 12.0 | 71 | 3.3 | 2.3 | 1.0 | 12.0 | 0.870 | |
|
| 197 | 2.0 | 1.9 | 0.0 | 8.0 | 71 | 1.8 | 1.8 | 0.0 | 8.0 | 0.410 | |
Association of 25 SNPs with GDM risk.
| Filipino | Japanese | Pacific Islanders | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | Alleles | MAF | HWE | Alleles | MAF | HWE | Alleles | MAF | HWE |
| ADCY5 | rs2877716 | 0.7 | 0.028 | 0.3 | 1.000 | 4.3 | 1.000 | |||
| ARAP 1 | rs11603334 | G/ | 5.5 | 1.000 | G/ | 3.4 | 1.000 | G/ | 5.5 | 0.415 |
| CDKAL1 | rs7754840 | G/ | 49.6 | 0.258 | G/ | 39.4 | 0.718 | G/ | 45.6 | 0.877 |
| CDKN2A/2B | rs10811661 | 30.8 | 0.285 | 42.4 | 0.300 | 36.4 | 0.754 | |||
| DGKB | rs2191349 | 24.3 | 0.476 | 31.9 | 0.565 | 15.1 | 0.030 | |||
| EXT2 | rs1113132 | 27.1 | 0.082 | G/ | 34.3 | 0.856 | 14.2 | 0.546 | ||
| FTO | rs8050136 | C/ | 15.5 | 0.843 | C/ | 16 | 1.000 | C/ | 11.7 | 0.737 |
| G6PC2 | rs3755157 | C/ | 35.0 | 0.571 | C/ | 38.2 | 0.258 | 48.5 | 0.748 | |
| G6PC2 | rs16856187 | A/ | 37.3 | 0.330 | A/ | 33.9 | 0.573 | A/ | 43.8 | 1.000 |
| G6PC2 | rs560887 | C/ | 2.0 | 0.015 | C/ | 1.8 | 1.000 | C/ | 1.2 | <0.010 |
| GCK | rs4607517 | G/ | 13.9 | <0.010 | G/ | 22.7 | 1.000 | G/ | 18.9 | 0.815 |
| GCKR | rs780094 | 41.7 | 0.210 | T/ | 49.2 | 0.735 | 27.2 | 0.207 | ||
| HHEX | rs1111875 | T/ | 17.0 | 0.032 | T/ | 30.9 | 1.000 | T/ | 35.7 | 0.02 |
| HHEX | rs7923837 | A/ | 9.5 | 0.325 | A/ | 18.7 | 0.567 | A/ | 27.1 | 0.077 |
| IGFBP2 | rs4402960 | G/ | 26.5 | 0.358 | G/ | 29.4 | 0.551 | G/ | 22.4 | 0.399 |
| KCNQ1 | rs2237892 | 38.7 | 0.462 | 40.9 | 0.601 | 28.7 | 1.000 | |||
| KCNQ1 | rs2237895 | A/ | 33.1 | 0.406 | A/ | 32.3 | 0.848 | A/ | 24.1 | 1.000 |
| MADD | rs10501320 | 0.5 | 1.000 | 0.3 | 1.000 | 1.2 | 1.000 | |||
| MTNR 1B | rs10830963 | 47.8 | 0.606 | C/ | 43.2 | 0.286 | 48.9 | 0.281 | ||
| PKN2 | rs6698181 | C/ | 18.8 | 0.623 | C/ | 40.2 | 0.476 | C/ | 8.7 | 1.000 |
| SLC30A8 | rs13266634 | T/ | 49.9 | 0.749 | 38.8 | 0.858 | 41.9 | 0.084 | ||
| TCF7L2 | rs7903146 | C/ | 1.8 | 1.000 | C/ | 5.2 | 1.000 | C/ | 11.5 | 0.041 |
| TCF7L2 | rs7901695 | T/ | 1.7 | 1.000 | T/ | 5.2 | 1.000 | T/ | 9.7 | 0.399 |
| TCF7L2 | rs12255372 | G/ | 1.7 | 1.000 | G/ | 3.6 | 1.000 | G/ | 9.2 | 0.688 |
| TCF7L2 | rs11196205 | G/ | 4.1 | 0.134 | G/ | 6.7 | 1.000 | G/ | 11.2 | 0.720 |
Alleles: major/minor, MAF = Major Allele Frequency, HWE = Hardy-Weinburg Equilibrium. SNPs not at Hardy–Weinberg equilibrium (p<0.05) are shown in blue. Reversed minor allele compared to Filipino Controls are in red with an asterisk. Risk alleles are bold and underlined.
Association of SNPs with GDM risk using a dominant model (unadjusted odds ratios; OR, Breslow-Day test; BD, Mantel-Haenszel formula; MH).
| Filipino | Japanese | PI | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | OR | P | OR | P | OR | P | BD_FJPI | OR.mh | Low. B | Up. B | ||||||
|
|
| 0.39 | ( | 0.337 | ) | 0.61 | ( | 0.176 | ) | 0.27 | ( |
| ) | 0.889 | 0.34 | 0.11 | 1.04 |
| ARAP 1 | rs11603334 | 1.11 | ( | 0.725 | ) | 1.08 | ( | 0.906 | ) | 0.76 | ( | 0.601 | ) | 0.821 | 1.02 | 0.64 | 1.63 |
| CDKAL1 | rs7754840 | 1.5 | ( | 0.071 | ) | 0.66 | ( | 0.195 | ) | 1.82 | ( | 0.089 | ) | 0.057 | 1.27 | 0.92 | 1.75 |
| CDKN2A/2B | rs10811661 | 0.88 | ( | 0.499 | ) | 1.17 | ( | 0.641 | ) | 0.57 | ( | 0.054 | ) | 0.248 | 0.83 | 0.63 | 1.11 |
| DGKB | rs2191349 | 1.13 | ( | 0.507 | ) | 0.78 | ( | 0.433 | ) | 0.74 | ( | 0.365 | ) | 0.406 | 0.96 | 0.72 | 1.29 |
|
|
| 1.52 | ( |
| ) | 4.00 | ( |
| ) | 1.04 | ( | 0.907 | ) | 0.218 |
|
|
|
| FTO | rs8050136 | 1.11 | ( | 0.604 | ) | 0.9 | ( | 0.767 | ) | 0.7 | ( | 0.335 | ) | 0.539 | 0.97 | 0.71 | 1.34 |
| G6PC2 | rs16856187 | 0.74 | ( | 0.12 | ) | 0.68 | ( | 0.217 | ) | 1.17 | ( | 0.626 | ) | 0.393 | 0.80 | 0.60 | 1.07 |
|
|
| 0.83 | ( | 0.346 | ) | 0.52 | ( |
| ) | 1.18 | ( | 0.676 | ) | 0.252 | 0.80 | 0.59 | 1.07 |
| G6PC2 | rs560887 | 0.44 | ( | 0.156 | ) | 0.4 | ( | 0.35 | ) | 1.43 | ( | 0.293 | ) | 0.745 | 0.41 | 0.15 | 1.12 |
| GCK | rs4607517 | 1.45 | ( | 0.088 | ) | 1.17 | ( | 0.632 | ) | 0.91 | ( | 0.753 | ) | 0.456 | 1.22 | 0.90 | 1.65 |
| GCKR | rs780094 | 0.89 | ( | 0.56 | ) | 1.41 | ( | 0.367 | ) | 0.67 | ( | 0.17 | ) | 0.307 | 0.89 | 0.66 | 1.19 |
|
|
| 1.5 | ( |
| ) | 0.61 | ( | 0.13 | ) | 1.43 | ( | 0.229 | ) | 0.053 | 1.22 | 0.91 | 1.63 |
|
|
| 1.51 | ( | 0.085 | ) | 1.19 | ( | 0.605 | ) | 1.84 | ( |
| ) | 0.607 |
|
|
|
|
|
| 0.97 | ( | 0.888 | ) | 0.5 | ( |
| ) | 0.83 | ( | 0.534 | ) | 0.205 | 0.82 | 0.62 | 1.09 |
|
|
| 0.49 | ( |
| ) | 0.5 | ( |
| ) | 1.22 | ( | 0.488 | ) |
|
| ||
|
|
| 1.1 | ( | 0.624 | ) | 0.96 | ( | 0.907 | ) | 1.79 | ( |
| ) | 0.28 | 1.20 | 0.91 | 1.59 |
| MADD | rs10501320 | 0.59 | ( | 0.627 | ) | 0.61 | ( | 0.176 | ) | 1.43 | ( | 0.293 | ) | 0.556 | 0.43 | 0.10 | 1.95 |
|
|
| 0.63 | ( |
| ) | 0.71 | ( | 0.368 | ) | 0.52 | ( |
| ) | 0.799 |
|
|
|
| PKN2 | rs6698181 | 0.89 | ( | 0.551 | ) | 0.82 | ( | 0.555 | ) | 1.02 | ( | 0.95 | ) | 0.91 | 0.89 | 0.66 | 1.22 |
|
|
| 0.58 | ( |
| ) | 0.74 | ( | 0.387 | ) | 1.09 | ( | 0.781 | ) | 0.239 |
|
|
|
| TCF7L2 | rs11196205 | 0.95 | ( | 0.89 | ) | 0.7 | ( | 0.465 | ) | 0.82 | ( | 0.583 | ) | 0.878 | 0.84 | 0.54 | 1.31 |
| TCF7L2 | rs12255372 | 0.92 | ( | 0.876 | ) | 0.64 | ( | 0.496 | ) | 0.72 | ( | 0.411 | ) | 0.902 | 0.76 | 0.43 | 1.34 |
| TCF7L2 | rs7901695 | 0.91 | ( | 0.866 | ) | 0.8 | ( | 0.683 | ) | 0.92 | ( | 0.817 | ) | 0.979 | 0.89 | 0.52 | 1.50 |
| TCF7L2 | rs7903146 | 1.2 | ( | 0.724 | ) | 0.8 | ( | 0.683 | ) | 0.67 | ( | 0.288 | ) | 0.655 | 0.82 | 0.48 | 1.38 |
BD-FJPI = Breslow Day Test for Filipino, Japanese and Pacific Islander. SNPs with significant unadjusted OR p values (p<0.05) are highlighted in blue. SNPs with significant Breslow-Day test p values (p<0.05) are highlighted in green. SNPs with values from Mantel-Haenszel formula significantly different from 1.0 are highlighted in red.
Association of SNPs with GDM risk using a recessive model (unadjusted odds ratios; OR, Breslow-Day Test; BD, Mantel-Haenszel formula; MH).
| Filipino | Japanese | PI | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | OR | P | OR | P | OR | P | BD_FJPI | OR. mh | Low. B | Up. B | ||||||
| ADCY5 | rs2877716 | 1.13 | ( | 0.99 | ) | NA | ( | NA | ) | NA | ( | NA | ) | NA | 0 | 0 | 0 |
| ARAP 1 | rs11603334 | 2.39 | ( | 0.544 | ) | NA | ( | NA | ) | 2.85 | ( | 0.471 | ) | 0.931 | 2.605 | 0.364 | 18.643 |
| CDKAL1 | rs7754840 | 0.82 | ( | 0.375 | ) | 1.38 | ( | 0.441 | ) | 1.33 | ( | 0.436 | ) | 0.366 | 0.997 | 0.71 | 1.4 |
|
|
| 0.63 | ( | 0.167 | ) | 0.36 | ( |
| ) | 1.17 | ( | 0.701 | ) | 0.18 | 0.667 | 0.425 | 1.047 |
| DGKB | rs2191349 | 1.48 | ( | 0.327 | ) | 0.94 | ( | 0.903 | ) | 0.31 | ( | 0.204 | ) | 0.32 | 1.057 | 0.587 | 1.903 |
| EXT2 | rs1113132 | 0.73 | ( | 0.392 | ) | 1.52 | ( | 0.201 | ) | 1.14 | ( | 0.332 | ) | 0.131 | 1.03 | 0.652 | 1.627 |
| FTO | rs8050136 | 1.06 | ( | 0.923 | ) | 2.56 | ( | 0.267 | ) | 1.95 | ( | 0.484 | ) | 0.662 | 1.514 | 0.655 | 3.499 |
| G6PC2 | rs3755157 | 1.04 | ( | 0.898 | ) | 1.49 | ( | 0.374 | ) | 1.19 | ( | 0.621 | ) | 0.792 | 1.168 | 0.788 | 1.732 |
| G6PC2 | rs560887 | 1.13 | ( | 0.99 | ) | NA | ( | NA | ) | 1.14 | ( | 1 | ) | 0.372 | 0.518 | 0.06 | 4.461 |
| G6PC2 | rs16856187 | 1.04 | ( | 0.898 | ) | 1.44 | ( | 0.406 | ) | 1.36 | ( | 0.387 | ) | 0.745 | 1.198 | 0.821 | 1.749 |
| GCK | rs4607517 | 1.02 | ( | 0.969 | ) | 1.06 | ( | 0.935 | ) | 0.48 | ( | 0.46 | ) | 0.794 | 0.919 | 0.438 | 1.929 |
| GCKR | rs780094 | 0.76 | ( | 0.268 | ) | 1.10 | ( | 0.785 | ) | 1.35 | ( | 0.6 | ) | 0.521 | 0.9 | 0.616 | 1.316 |
| HHEX | rs1111875 | 1.13 | ( | 0.798 | ) | 1.1 | ( | 0.857 | ) | 1.15 | ( | 0.729 | ) | 0.998 | 1.128 | 0.679 | 1.873 |
| HHEX | rs7923837 | 1.81 | ( | 0.448 | ) | 1.65 | ( | 0.595 | ) | 1.3 | ( | 0.592 | ) | 0.923 | 1.456 | 0.703 | 3.013 |
| IGFBP2 | rs4402960 | 0.75 | ( | 0.435 | ) | 0.37 | ( | 0.156 | ) | 0.84 | ( | 0.826 | ) | 0.679 | 0.665 | 0.361 | 1.224 |
|
|
| 0.55 | ( |
| ) | 0.78 | ( | 0.565 | ) | 0.82 | ( | 0.736 | ) | 0.726 | 0.634 | 0.412 | 0.977 |
|
|
| 2 | ( |
| ) | 0.69 | ( | 0.517 | ) | 1.64 | ( | 0.404 | ) | 0.25 |
|
|
|
| MADD | rs10501320 | NA | ( | NA | ) | NA | ( | NA | ) | NA | ( | NA | ) | NA | 0 | 0 | 0 |
|
|
| 0.39 | ( |
| ) | 0.61 | ( | 0.15 | ) | 0.7 | ( | 0.296 | ) | 0.339 |
|
|
|
| PKN2 | rs6698181 | 0.59 | ( | 0.325 | ) | 1.89 | ( | 0.117 | ) | 1.14 | ( | 1 | ) | 0.185 | 1.2 | 0.653 | 2.205 |
|
|
| 0.79 | ( | 0.301 | ) | 0.55 | ( | 0.23 | ) | 2.77 | ( |
| ) |
|
| ||
| TCF7L2 | rs11196205 | 1.13 | ( | 0.99 | ) | NA | ( | NA | ) | 1.14 | ( | 0.57 | ) | 0.363 | 0.432 | 0.052 | 3.622 |
| TCF7L2 | rs12255372 | NA | ( | NA | ) | NA | ( | NA | ) | 1.14 | ( | 1 | ) | NA | 0 | 0 | 0 |
|
|
| 1.13 | ( | 0.296 | ) | NA | ( | NA | ) | 1.14 | ( | 0.345 | ) |
|
| ||
| TCF7L2 | rs7901695 | NA | ( | NA | ) | NA | ( | NA | ) | 1.14 | ( | 0.571 | ) | NA | 0 | 0 | 0 |
BD-FJPI = Breslow Day Test for Filipino, Japanese and Pacific Islander. SNPs with significant unadjusted OR p values (p<0.05) are shown in blue. SNPs with significant Breslow-Day test p values (p<0.05) are shown in green. SNPs with values from Mantel-Haenszel formula significantly different from 1.0 are shown in red.
Multivariable logistic regression analysis (OR).
| Filipino | Japanese | PI | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | OR | P_value | OR | P_value | OR | P_value | |||||||
|
| ADCY5 | rs2877716 | 0.37 | ( | 0.153 | ) | ||||||||
|
| rs1113132 | 1.53 | ( |
| ) | 7.40 | ( | 0.063 | ) | |||||
| G6PC2 | rs3755157 | 0.57 | ( | 0.133 | ) | |||||||||
|
| rs1111875 | 1.60 | ( |
| ) | |||||||||
| HHEX | rs7923837 | 1.55 | ( | 0.196 | ) | |||||||||
|
| rs4402960 | 0.32 | ( |
| ) | |||||||||
|
| rs2237892 | 0.5 | ( |
| ) | 0.45 | ( |
| ) | |||||
| KCNQ1 | rs2237895 | 1.72 | ( | 0.108 | ) | |||||||||
|
| rs10830963 | 0.62 | ( |
| ) | 0.42 | ( |
| ) | |||||
|
| rs13266634 | 0.49 | ( |
| ) | |||||||||
|
|
| rs2237892 | 0.51 | ( |
| ) | ||||||||
|
| rs2237895 | 1.84 | ( |
| ) | |||||||||
| CDKN2A/2B | rs10811661 | 0.35 | ( | 0.053 | ) | |||||||||
|
| rs10830963 | 0.34 | ( |
| ) | |||||||||
|
| rs13266634 | 2.43 | ( |
| ) | |||||||||
List of SNPs (adjusted for age, BMI, parity, gravidity) which showed significant unadjusted OR p values (p<0.05) in the Dominant (Table 3) and Recessive (Table 4).
Multivariable logistic regression analysis (BD).
| Filipino | Japanese | PI | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | OR | P_value | OR | P_value | OR | P_value | |||||||
|
|
| rs2237892 | 0.5 | ( |
| ) | 0.45 | ( |
| ) | 1.18 | ( | 0.622 | ) |
|
| TCF7L2 | rs7903146 | NA | ( | 0.99 | ) | NA | ( | NA | ) | NA | ( | 0.98 | ) |
|
| rs13266634 | 0.73 | ( | 0.17 | ) | 0.62 | ( | 0.41 | ) | 2.43 | ( |
| ) | |
List of SNPs (adjusted for age, BMI, parity, gravidity) which showed significant Breslow-Day test p values (p<0.05) in the Dominant (Table 3) and Recessive models (Table 4).
Multivariable logistic regression analysis.
| Filipino | Japanese | PI | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | OR | P_value | OR | P_value | OR | P_value | |||||||
|
| EXT2 | rs1113132 | 1.33 | ( | 0.13 | ) | 6.05 | ( | 0.085 | ) | 1.16 | ( | 0.69 | ) |
| HHEX | rs7923837 | 1.48 | ( | 0.095 | ) | 1.01 | ( | 0.97 | ) | 1.56 | ( | 0.17 | ) | |
|
| rs10830963 | 0.63 | ( |
| ) | 0.81 | ( | 0.59 | ) | 0.39 | ( |
| ) | |
|
| rs13266634 | 0.56 | ( |
| ) | 0.73 | ( | 0.38 | ) | 1.02 | ( | 0.96 | ) | |
|
| KCNQ1 | rs2237895 | 1.5 | ( | 0.14 | ) | 0.61 | ( | 0.46 | ) | 1.19 | ( | 0.8 | ) |
|
| rs10830963 | 0.37 | ( |
| ) | 0.52 | ( | 0.092 | ) | 0.56 | ( | 0.14 | ) | |
List of SNPs (adjusted for age, BMI, parity, gravidity) which showed values from Mantel-Haenszel formula significantly different from 1.0 in the Dominant (Table 3) and Recessive (Table 4) models.
Summary table illustrating SNPs with significant associations with GDM, according to race.
| Filipino | Japanese | PI | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | SNP | OR | P_value | OR | P_value | OR | P_value | |||||||
|
| rs1113132 | 1.53 | ( |
| ) | |||||||||
| rs1111875 | 1.60 | ( |
| ) | ||||||||||
| rs4402960 | 0.32 | ( |
| ) | ||||||||||
| rs2237892 | 0.5 | ( |
| ) | 0.45 | ( |
| ) | ||||||
| rs10830963 | 0.62 | ( |
| ) | 0.42 | ( |
| ) | ||||||
| rs13266634 | 0.56 | ( |
| ) | ||||||||||
|
| rs2237892 | 0.51 | ( |
| ) | |||||||||
| rs2237895 | 1.84 | ( |
| ) | ||||||||||
| rs10830963 | 0.37 | ( |
| ) | ||||||||||
| rs13266634 | 2.43 | ( |
| ) | ||||||||||
The table lists SNPs that showed significant unadjusted OR p values (p<0.05; *), significant Breslow-Day test p values (p<0.05; **) or values from Mantel-Haenszel formula significantly different from 1.0 (***) in the Dominant (Table 3) and Recessive (Table 4) models. Significance was determined after multivariable logistic regression analysis was performed to control for confounding factors.