Literature DB >> 33414548

A cross-platform approach identifies genetic regulators of human metabolism and health.

Luca A Lotta1, Maik Pietzner1, Isobel D Stewart1, Laura B L Wittemans1,2, Chen Li1, Roberto Bonelli3,4, Johannes Raffler5, Emma K Biggs6, Clare Oliver-Williams7,8, Victoria P W Auyeung1, Jian'an Luan1, Eleanor Wheeler1, Ellie Paige9, Praveen Surendran7,10,11,12, Gregory A Michelotti13, Robert A Scott1, Stephen Burgess14,15, Verena Zuber14,16, Eleanor Sanderson17, Albert Koulman1,5,18, Fumiaki Imamura1, Nita G Forouhi1, Kay-Tee Khaw15, Julian L Griffin19, Angela M Wood7,10,11,20,21, Gabi Kastenmüller5, John Danesh7,10,11,20,22,23, Adam S Butterworth7,10,11,20,22,23, Fiona M Gribble6, Frank Reimann6, Melanie Bahlo3,4, Eric Fauman24, Nicholas J Wareham1, Claudia Langenberg25,26,27.   

Abstract

In cross-platform analyses of 174 metabolites, we identify 499 associations (P < 4.9 × 10-10) characterized by pleiotropy, allelic heterogeneity, large and nonlinear effects and enrichment for nonsynonymous variation. We identify a signal at GLP2R (p.Asp470Asn) shared among higher citrulline levels, body mass index, fasting glucose-dependent insulinotropic peptide and type 2 diabetes, with β-arrestin signaling as the underlying mechanism. Genetically higher serine levels are shown to reduce the likelihood (by 95%) and predict development of macular telangiectasia type 2, a rare degenerative retinal disease. Integration of genomic and small molecule data across platforms enables the discovery of regulators of human metabolism and translation into clinical insights.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33414548      PMCID: PMC7612925          DOI: 10.1038/s41588-020-00751-5

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   41.307


  60 in total

1.  EPIC-Norfolk: study design and characteristics of the cohort. European Prospective Investigation of Cancer.

Authors:  N Day; S Oakes; R Luben; K T Khaw; S Bingham; A Welch; N Wareham
Journal:  Br J Cancer       Date:  1999-07       Impact factor: 7.640

2.  Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix.

Authors:  J Li; L Ji
Journal:  Heredity (Edinb)       Date:  2005-09       Impact factor: 3.821

Review 3.  Metabolomics for Investigating Physiological and Pathophysiological Processes.

Authors:  David S Wishart
Journal:  Physiol Rev       Date:  2019-10-01       Impact factor: 37.312

4.  Identification of a novel system L amino acid transporter structurally distinct from heterodimeric amino acid transporters.

Authors:  Ellappan Babu; Yoshikatsu Kanai; Arthit Chairoungdua; Do Kyung Kim; Yuji Iribe; Sahatchai Tangtrongsup; Promsuk Jutabha; Yuewei Li; Nesar Ahmed; Shinichi Sakamoto; Naohiko Anzai; Seishi Nagamori; Hitoshi Endou
Journal:  J Biol Chem       Date:  2003-08-20       Impact factor: 5.157

5.  Metabonomic, transcriptomic, and genomic variation of a population cohort.

Authors:  Michael Inouye; Johannes Kettunen; Pasi Soininen; Kaisa Silander; Samuli Ripatti; Linda S Kumpula; Eija Hämäläinen; Pekka Jousilahti; Antti J Kangas; Satu Männistö; Markku J Savolainen; Antti Jula; Jaana Leiviskä; Aarno Palotie; Veikko Salomaa; Markus Perola; Mika Ala-Korpela; Leena Peltonen
Journal:  Mol Syst Biol       Date:  2010-12-21       Impact factor: 13.068

6.  Mendelian randomization analysis with multiple genetic variants using summarized data.

Authors:  Stephen Burgess; Adam Butterworth; Simon G Thompson
Journal:  Genet Epidemiol       Date:  2013-09-20       Impact factor: 2.135

7.  Bayesian test for colocalisation between pairs of genetic association studies using summary statistics.

Authors:  Claudia Giambartolomei; Damjan Vukcevic; Eric E Schadt; Lude Franke; Aroon D Hingorani; Chris Wallace; Vincent Plagnol
Journal:  PLoS Genet       Date:  2014-05-15       Impact factor: 5.917

8.  An exome array study of the plasma metabolome.

Authors:  Eugene P Rhee; Qiong Yang; Bing Yu; Xuan Liu; Susan Cheng; Amy Deik; Kerry A Pierce; Kevin Bullock; Jennifer E Ho; Daniel Levy; Jose C Florez; Sek Kathiresan; Martin G Larson; Ramachandran S Vasan; Clary B Clish; Thomas J Wang; Eric Boerwinkle; Christopher J O'Donnell; Robert E Gerszten
Journal:  Nat Commun       Date:  2016-07-25       Impact factor: 14.919

9.  GENCODE reference annotation for the human and mouse genomes.

Authors:  Adam Frankish; Mark Diekhans; Anne-Maud Ferreira; Rory Johnson; Irwin Jungreis; Jane Loveland; Jonathan M Mudge; Cristina Sisu; James Wright; Joel Armstrong; If Barnes; Andrew Berry; Alexandra Bignell; Silvia Carbonell Sala; Jacqueline Chrast; Fiona Cunningham; Tomás Di Domenico; Sarah Donaldson; Ian T Fiddes; Carlos García Girón; Jose Manuel Gonzalez; Tiago Grego; Matthew Hardy; Thibaut Hourlier; Toby Hunt; Osagie G Izuogu; Julien Lagarde; Fergal J Martin; Laura Martínez; Shamika Mohanan; Paul Muir; Fabio C P Navarro; Anne Parker; Baikang Pei; Fernando Pozo; Magali Ruffier; Bianca M Schmitt; Eloise Stapleton; Marie-Marthe Suner; Irina Sycheva; Barbara Uszczynska-Ratajczak; Jinuri Xu; Andrew Yates; Daniel Zerbino; Yan Zhang; Bronwen Aken; Jyoti S Choudhary; Mark Gerstein; Roderic Guigó; Tim J P Hubbard; Manolis Kellis; Benedict Paten; Alexandre Reymond; Michael L Tress; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

10.  A central role for GRB10 in regulation of islet function in man.

Authors:  Inga Prokopenko; Wenny Poon; Reedik Mägi; Rashmi Prasad B; S Albert Salehi; Peter Almgren; Peter Osmark; Nabila Bouatia-Naji; Nils Wierup; Tove Fall; Alena Stančáková; Adam Barker; Vasiliki Lagou; Clive Osmond; Weijia Xie; Jari Lahti; Anne U Jackson; Yu-Ching Cheng; Jie Liu; Jeffrey R O'Connell; Paul A Blomstedt; Joao Fadista; Sami Alkayyali; Tasnim Dayeh; Emma Ahlqvist; Jalal Taneera; Cecile Lecoeur; Ashish Kumar; Ola Hansson; Karin Hansson; Benjamin F Voight; Hyun Min Kang; Claire Levy-Marchal; Vincent Vatin; Aarno Palotie; Ann-Christine Syvänen; Andrea Mari; Michael N Weedon; Ruth J F Loos; Ken K Ong; Peter Nilsson; Bo Isomaa; Tiinamaija Tuomi; Nicholas J Wareham; Michael Stumvoll; Elisabeth Widen; Timo A Lakka; Claudia Langenberg; Anke Tönjes; Rainer Rauramaa; Johanna Kuusisto; Timothy M Frayling; Philippe Froguel; Mark Walker; Johan G Eriksson; Charlotte Ling; Peter Kovacs; Erik Ingelsson; Mark I McCarthy; Alan R Shuldiner; Kristi D Silver; Markku Laakso; Leif Groop; Valeriya Lyssenko
Journal:  PLoS Genet       Date:  2014-04-03       Impact factor: 5.917

View more
  28 in total

1.  Trans-ethnic genome-wide association study of blood metabolites in the Chronic Renal Insufficiency Cohort (CRIC) study.

Authors:  Eugene P Rhee; Aditya Surapaneni; Zihe Zheng; Linda Zhou; Diptavo Dutta; Dan E Arking; Jingning Zhang; ThuyVy Duong; Nilanjan Chatterjee; Shengyuan Luo; Pascal Schlosser; Rupal Mehta; Sushrut S Waikar; Santosh L Saraf; Tanika N Kelly; Lee L Hamm; Panduranga S Rao; Anna V Mathew; Chi-Yuan Hsu; Afshin Parsa; Ramachandran S Vasan; Paul L Kimmel; Clary B Clish; Josef Coresh; Harold I Feldman; Morgan E Grams
Journal:  Kidney Int       Date:  2022-02-01       Impact factor: 10.612

2.  MC3R links nutritional state to childhood growth and the timing of puberty.

Authors:  B Y H Lam; A Williamson; S Finer; C Langenberg; J R B Perry; G S Yeo; S O'Rahilly; F R Day; J A Tadross; A Gonçalves Soares; K Wade; P Sweeney; M N Bedenbaugh; D T Porter; A Melvin; K L J Ellacott; R N Lippert; S Buller; J Rosmaninho-Salgado; G K C Dowsett; K E Ridley; Z Xu; I Cimino; D Rimmington; K Rainbow; K Duckett; S Holmqvist; A Khan; X Dai; E G Bochukova; R C Trembath; H C Martin; A P Coll; D H Rowitch; N J Wareham; D A van Heel; N Timpson; R B Simerly; K K Ong; R D Cone
Journal:  Nature       Date:  2021-11-03       Impact factor: 49.962

3.  Association of Physical Activity With Bioactive Lipids and Cardiovascular Events.

Authors:  Rosangela A Hoshi; Yanyan Liu; Mohit Jain; Daniel I Chasman; Olga V Demler; Samia Mora; Heike Luttmann-Gibson; Saumya Tiwari; Franco Giulianini; Allen M Andres; Jeramie D Watrous; Nancy R Cook; Karen H Costenbader; Olivia I Okereke; Paul M Ridker; JoAnn E Manson; I-Min Lee; Manickavasagar Vinayagamoorthy; Susan Cheng; Trisha Copeland
Journal:  Circ Res       Date:  2022-07-19       Impact factor: 23.213

4.  Integrative analysis of metabolite GWAS illuminates the molecular basis of pleiotropy and genetic correlation.

Authors:  Courtney J Smith; Nasa Sinnott-Armstrong; Anna Cichońska; Heli Julkunen; Eric B Fauman; Peter Würtz; Jonathan K Pritchard
Journal:  Elife       Date:  2022-09-08       Impact factor: 8.713

5.  OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics.

Authors:  Guangyan Zhou; Zhiqiang Pang; Yao Lu; Jessica Ewald; Jianguo Xia
Journal:  Nucleic Acids Res       Date:  2022-05-26       Impact factor: 19.160

6.  Comprehensive genetic analysis of the human lipidome identifies loci associated with lipid homeostasis with links to coronary artery disease.

Authors:  Gemma Cadby; Corey Giles; Phillip E Melton; Kevin Huynh; Natalie A Mellett; Thy Duong; Anh Nguyen; Michelle Cinel; Alex Smith; Gavriel Olshansky; Tingting Wang; Marta Brozynska; Mike Inouye; Nina S McCarthy; Amir Ariff; Joseph Hung; Jennie Hui; John Beilby; Marie-Pierre Dubé; Gerald F Watts; Sonia Shah; Naomi R Wray; Wei Ling Florence Lim; Pratishtha Chatterjee; Ian Martins; Simon M Laws; Tenielle Porter; Michael Vacher; Ashley I Bush; Christopher C Rowe; Victor L Villemagne; David Ames; Colin L Masters; Kevin Taddei; Matthias Arnold; Gabi Kastenmüller; Kwangsik Nho; Andrew J Saykin; Xianlin Han; Rima Kaddurah-Daouk; Ralph N Martins; John Blangero; Peter J Meikle; Eric K Moses
Journal:  Nat Commun       Date:  2022-06-06       Impact factor: 17.694

7.  mGWAS-Explorer: Linking SNPs, Genes, Metabolites, and Diseases for Functional Insights.

Authors:  Le Chang; Guangyan Zhou; Huiting Ou; Jianguo Xia
Journal:  Metabolites       Date:  2022-06-07

8.  Large-scale Integrated Analysis of Genetics and Metabolomic Data Reveals Potential Links Between Lipids and Colorectal Cancer Risk.

Authors:  Xiang Shu; Zhishan Chen; Jirong Long; Xingyi Guo; Yaohua Yang; Conghui Qu; Yoon-Ok Ahn; Qiuyin Cai; Graham Casey; Stephen B Gruber; Jeroen R Huyghe; Sun Ha Jee; Mark A Jenkins; Wei-Hua Jia; Keum Ji Jung; Yoichiro Kamatani; Dong-Hyun Kim; Jeongseon Kim; Sun-Seog Kweon; Loic Le Marchand; Koichi Matsuda; Keitaro Matsuo; Polly A Newcomb; Jae Hwan Oh; Jennifer Ose; Isao Oze; Rish K Pai; Zhi-Zhong Pan; Paul D P Pharoah; Mary C Playdon; Ze-Fang Ren; Robert E Schoen; Aesun Shin; Min-Ho Shin; Xiao-Ou Shu; Xiaohui Sun; Catherine M Tangen; Chizu Tanikawa; Cornelia M Ulrich; Franzel J B van Duijnhoven; Bethany Van Guelpen; Alicja Wolk; Michael O Woods; Anna H Wu; Ulrike Peters; Wei Zheng
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2022-06-01       Impact factor: 4.090

9.  Genetic disruption of serine biosynthesis is a key driver of macular telangiectasia type 2 aetiology and progression.

Authors:  Roberto Bonelli; Brendan R E Ansell; Luca Lotta; Thomas Scerri; Traci E Clemons; Irene Leung; Tunde Peto; Alan C Bird; Ferenc B Sallo; Claudia Langenberg; Melanie Bahlo
Journal:  Genome Med       Date:  2021-03-09       Impact factor: 11.117

10.  Metabolome Genome-Wide Association Study Identifies 74 Novel Genomic Regions Influencing Plasma Metabolites Levels.

Authors:  Pirro G Hysi; Massimo Mangino; Paraskevi Christofidou; Mario Falchi; Edward D Karoly; Robert P Mohney; Ana M Valdes; Tim D Spector; Cristina Menni
Journal:  Metabolites       Date:  2022-01-11
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.