Literature DB >> 34916659

A massive 7T fMRI dataset to bridge cognitive neuroscience and artificial intelligence.

Emily J Allen1,2, Ghislain St-Yves3,4, Yihan Wu5, Jesse L Breedlove3,2, Jacob S Prince6,7, Logan T Dowdle8,9, Matthias Nau10, Brad Caron11,12, Franco Pestilli13,14,15, Ian Charest16,17, J Benjamin Hutchinson18, Thomas Naselaris3,4, Kendrick Kay19.   

Abstract

Extensive sampling of neural activity during rich cognitive phenomena is critical for robust understanding of brain function. Here we present the Natural Scenes Dataset (NSD), in which high-resolution functional magnetic resonance imaging responses to tens of thousands of richly annotated natural scenes were measured while participants performed a continuous recognition task. To optimize data quality, we developed and applied novel estimation and denoising techniques. Simple visual inspections of the NSD data reveal clear representational transformations along the ventral visual pathway. Further exemplifying the inferential power of the dataset, we used NSD to build and train deep neural network models that predict brain activity more accurately than state-of-the-art models from computer vision. NSD also includes substantial resting-state and diffusion data, enabling network neuroscience perspectives to constrain and enhance models of perception and memory. Given its unprecedented scale, quality and breadth, NSD opens new avenues of inquiry in cognitive neuroscience and artificial intelligence.
© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2021        PMID: 34916659     DOI: 10.1038/s41593-021-00962-x

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   28.771


  66 in total

1.  Memory's echo: vivid remembering reactivates sensory-specific cortex.

Authors:  M E Wheeler; S E Petersen; R L Buckner
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-26       Impact factor: 11.205

Review 2.  The human visual cortex.

Authors:  Kalanit Grill-Spector; Rafael Malach
Journal:  Annu Rev Neurosci       Date:  2004       Impact factor: 12.449

3.  Mapping visual cortex in monkeys and humans using surface-based atlases.

Authors:  D C Van Essen; J W Lewis; H A Drury; N Hadjikhani; R B Tootell; M Bakircioglu; M I Miller
Journal:  Vision Res       Date:  2001       Impact factor: 1.886

4.  Attention reduces spatial uncertainty in human ventral temporal cortex.

Authors:  Kendrick N Kay; Kevin S Weiner; Kalanit Grill-Spector
Journal:  Curr Biol       Date:  2015-02-19       Impact factor: 10.834

Review 5.  The WU-Minn Human Connectome Project: an overview.

Authors:  David C Van Essen; Stephen M Smith; Deanna M Barch; Timothy E J Behrens; Essa Yacoub; Kamil Ugurbil
Journal:  Neuroimage       Date:  2013-05-16       Impact factor: 6.556

6.  High-dimensional geometry of population responses in visual cortex.

Authors:  Carsen Stringer; Marius Pachitariu; Nicholas Steinmetz; Matteo Carandini; Kenneth D Harris
Journal:  Nature       Date:  2019-06-26       Impact factor: 49.962

7.  Reconstruction and Simulation of Neocortical Microcircuitry.

Authors:  Henry Markram; Eilif Muller; Srikanth Ramaswamy; Michael W Reimann; Marwan Abdellah; Carlos Aguado Sanchez; Anastasia Ailamaki; Lidia Alonso-Nanclares; Nicolas Antille; Selim Arsever; Guy Antoine Atenekeng Kahou; Thomas K Berger; Ahmet Bilgili; Nenad Buncic; Athanassia Chalimourda; Giuseppe Chindemi; Jean-Denis Courcol; Fabien Delalondre; Vincent Delattre; Shaul Druckmann; Raphael Dumusc; James Dynes; Stefan Eilemann; Eyal Gal; Michael Emiel Gevaert; Jean-Pierre Ghobril; Albert Gidon; Joe W Graham; Anirudh Gupta; Valentin Haenel; Etay Hay; Thomas Heinis; Juan B Hernando; Michael Hines; Lida Kanari; Daniel Keller; John Kenyon; Georges Khazen; Yihwa Kim; James G King; Zoltan Kisvarday; Pramod Kumbhar; Sébastien Lasserre; Jean-Vincent Le Bé; Bruno R C Magalhães; Angel Merchán-Pérez; Julie Meystre; Benjamin Roy Morrice; Jeffrey Muller; Alberto Muñoz-Céspedes; Shruti Muralidhar; Keerthan Muthurasa; Daniel Nachbaur; Taylor H Newton; Max Nolte; Aleksandr Ovcharenko; Juan Palacios; Luis Pastor; Rodrigo Perin; Rajnish Ranjan; Imad Riachi; José-Rodrigo Rodríguez; Juan Luis Riquelme; Christian Rössert; Konstantinos Sfyrakis; Ying Shi; Julian C Shillcock; Gilad Silberberg; Ricardo Silva; Farhan Tauheed; Martin Telefont; Maria Toledo-Rodriguez; Thomas Tränkler; Werner Van Geit; Jafet Villafranca Díaz; Richard Walker; Yun Wang; Stefano M Zaninetta; Javier DeFelipe; Sean L Hill; Idan Segev; Felix Schürmann
Journal:  Cell       Date:  2015-10-08       Impact factor: 41.582

8.  Generative Feedback Explains Distinct Brain Activity Codes for Seen and Mental Images.

Authors:  Jesse L Breedlove; Ghislain St-Yves; Cheryl A Olman; Thomas Naselaris
Journal:  Curr Biol       Date:  2020-04-30       Impact factor: 10.900

9.  A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex.

Authors:  Saskia E J de Vries; Jerome A Lecoq; Michael A Buice; Peter A Groblewski; Gabriel K Ocker; Michael Oliver; David Feng; Nicholas Cain; Peter Ledochowitsch; Daniel Millman; Kate Roll; Marina Garrett; Tom Keenan; Leonard Kuan; Stefan Mihalas; Shawn Olsen; Carol Thompson; Wayne Wakeman; Jack Waters; Derric Williams; Chris Barber; Nathan Berbesque; Brandon Blanchard; Nicholas Bowles; Shiella D Caldejon; Linzy Casal; Andrew Cho; Sissy Cross; Chinh Dang; Tim Dolbeare; Melise Edwards; John Galbraith; Nathalie Gaudreault; Terri L Gilbert; Fiona Griffin; Perry Hargrave; Robert Howard; Lawrence Huang; Sean Jewell; Nika Keller; Ulf Knoblich; Josh D Larkin; Rachael Larsen; Chris Lau; Eric Lee; Felix Lee; Arielle Leon; Lu Li; Fuhui Long; Jennifer Luviano; Kyla Mace; Thuyanh Nguyen; Jed Perkins; Miranda Robertson; Sam Seid; Eric Shea-Brown; Jianghong Shi; Nathan Sjoquist; Cliff Slaughterbeck; David Sullivan; Ryan Valenza; Casey White; Ali Williford; Daniela M Witten; Jun Zhuang; Hongkui Zeng; Colin Farrell; Lydia Ng; Amy Bernard; John W Phillips; R Clay Reid; Christof Koch
Journal:  Nat Neurosci       Date:  2019-12-16       Impact factor: 24.884

10.  A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.

Authors:  Zhihao Zheng; J Scott Lauritzen; Eric Perlman; Camenzind G Robinson; Matthew Nichols; Daniel Milkie; Omar Torrens; John Price; Corey B Fisher; Nadiya Sharifi; Steven A Calle-Schuler; Lucia Kmecova; Iqbal J Ali; Bill Karsh; Eric T Trautman; John A Bogovic; Philipp Hanslovsky; Gregory S X E Jefferis; Michael Kazhdan; Khaled Khairy; Stephan Saalfeld; Richard D Fetter; Davi D Bock
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

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  13 in total

1.  Non-neural factors influencing BOLD response magnitudes within individual subjects.

Authors:  Jan W Kurzawski; Omer Faruk Gulban; Keith Jamison; Jonathan Winawer; Kendrick Kay
Journal:  J Neurosci       Date:  2022-08-12       Impact factor: 6.709

2.  A highly selective response to food in human visual cortex revealed by hypothesis-free voxel decomposition.

Authors:  Meenakshi Khosla; N Apurva Ratan Murty; Nancy Kanwisher
Journal:  Curr Biol       Date:  2022-08-25       Impact factor: 10.900

3.  Short-term plasticity in the human visual thalamus.

Authors:  Jan W Kurzawski; Claudia Lunghi; Laura Biagi; Michela Tosetti; Maria Concetta Morrone; Paola Binda
Journal:  Elife       Date:  2022-04-06       Impact factor: 8.713

4.  Inference via sparse coding in a hierarchical vision model.

Authors:  Joshua Bowren; Luis Sanchez-Giraldo; Odelia Schwartz
Journal:  J Vis       Date:  2022-02-01       Impact factor: 2.240

5.  Normal Retinotopy in Primary Visual Cortex in a Congenital Complete Unilateral Lesion of Lateral Geniculate Nucleus in Human: A Case Study.

Authors:  Akshatha Bhat; Jan W Kurzawski; Giovanni Anobile; Francesca Tinelli; Laura Biagi; Maria Concetta Morrone
Journal:  Int J Mol Sci       Date:  2022-01-19       Impact factor: 5.923

6.  NeuroGen: Activation optimized image synthesis for discovery neuroscience.

Authors:  Zijin Gu; Keith Wakefield Jamison; Meenakshi Khosla; Emily J Allen; Yihan Wu; Ghislain St-Yves; Thomas Naselaris; Kendrick Kay; Mert R Sabuncu; Amy Kuceyeski
Journal:  Neuroimage       Date:  2021-12-20       Impact factor: 6.556

7.  Towards real-world neuroscience using mobile EEG and augmented reality.

Authors:  Alexandra Krugliak; Alex Clarke
Journal:  Sci Rep       Date:  2022-02-10       Impact factor: 4.379

8.  Cortical layer-specific differences in stimulus selectivity revealed with high-field fMRI and single-vessel resolution optical imaging of the primary visual cortex.

Authors:  Shinho Cho; Arani Roy; Chao J Liu; Djaudat Idiyatullin; Wei Zhu; Yi Zhang; Xiao-Hong Zhu; Phillip O'Herron; Austin Leikvoll; Wei Chen; Prakash Kara; Kâmil Uğurbil
Journal:  Neuroimage       Date:  2022-02-07       Impact factor: 7.400

9.  Leveraging the power of media to drive cognition: a media-informed approach to naturalistic neuroscience.

Authors:  Clare Grall; Emily S Finn
Journal:  Soc Cogn Affect Neurosci       Date:  2022-06-03       Impact factor: 4.235

10.  Critical factors in achieving fine-scale functional MRI: Removing sources of inadvertent spatial smoothing.

Authors:  Jianbao Wang; Shahin Nasr; Anna Wang Roe; Jonathan R Polimeni
Journal:  Hum Brain Mapp       Date:  2022-04-13       Impact factor: 5.399

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