Galib Hasan1,2, Rashid R Valiev1,2,3, Vili-Taneli Salo1,2, Theo Kurtén1,2. 1. Department of Chemistry, University of Helsinki, POB 55, Helsinki FIN-00014, Finland. 2. Institute for Atmospheric and Earth System Research, Faculty of Science, University of Helsinki, Helsinki 00014, Finland. 3. Research School of Chemistry & Applied Biomedical Sciences, National Research Tomsk Polytechnic University, Lenin Avenue 30, Tomsk 634050, Russia.
Abstract
The formation of accretion products ("dimers") from recombination reactions of peroxyl radicals (RO2) is a key step in the gas-phase generation of low-volatility vapors, leading to atmospheric aerosol particles. We have recently demonstrated that this recombination reaction very likely proceeds via an intermediate complex of two alkoxy radicals (RO···OR') and that the accretion product pathway involves an intersystem crossing (ISC) of this complex from the triplet to the singlet surface. However, ISC rates have hitherto not been computed for large and chemically complex RO···OR' systems actually relevant to atmospheric aerosol formation. Here, we carry out systematic conformational sampling and ISC rate calculations on 3(RO···OR') clusters formed in the recombination reactions of different diastereomers of the first-generation peroxyl radicals originating in both OH- and NO3-initiated reactions of α-pinene, a key biogenic hydrocarbon for atmospheric aerosol formation. While we find large differences between the ISC rates of different diastereomer pairs, all systems have ISC rates of at least 106 s-1, and many have rates exceeding 1010 s-1. Especially the latter value demonstrates that accretion product formation via the suggested pathway is a competitive process also for α-pinene-derived RO2 and likely explains the experimentally observed gas-phase formation of C20 compounds in α-pinene oxidation.
The formation of accretion products ("dimers") from recombination reactions of peroxyl radicals (RO2) is a key step in the gas-phase generation of low-volatility vapors, leading to atmospheric aerosol particles. We have recently demonstrated that this recombination reaction very likely proceeds via an intermediate complex of two alkoxy radicals (RO···OR') and that the accretion product pathway involves an intersystem crossing (ISC) of this complex from the triplet to the singlet surface. However, ISC rates have hitherto not been computed for large and chemically complex RO···OR' systems actually relevant to atmospheric aerosol formation. Here, we carry out systematic conformational sampling and ISC rate calculations on 3(RO···OR') clusters formed in the recombination reactions of different diastereomers of the first-generation peroxyl radicals originating in both OH- and NO3-initiated reactions of α-pinene, a key biogenic hydrocarbon for atmospheric aerosol formation. While we find large differences between the ISC rates of different diastereomer pairs, all systems have ISC rates of at least 106 s-1, and many have rates exceeding 1010 s-1. Especially the latter value demonstrates that accretion product formation via the suggested pathway is a competitive process also for α-pinene-derived RO2 and likely explains the experimentally observed gas-phase formation of C20 compounds in α-pinene oxidation.
Organic peroxyl radicals
(RO2•) are important
molecules in the atmosphere because their reactions play a significant
role in the formation of low-volatility products, leading to secondary
organic aerosol (SOA) particles. Atmospheric aerosols, especially
fine <1 μm and ultrafine <100 nm particles, are regarded
as one of the key species responsible for air pollution-related mortality.[1] They also affect the climate by cloud, mist,
and fog formation[2] and contribute to the
earth’s energy budget by scattering and absorbing solar radiation
and by forming cloud condensation nuclei.[3] Aerosol-related effects are regarded as one of the least understood
components of global radiative forcing.[4]SOA formation is driven by the oxidation of volatile organic
compounds
(VOC) such as anthropogenic or biogenic hydrocarbons.[5] As the direct addition of O2 to hydrocarbons
is spin-forbidden (at least for ground-state singlet products), this
oxidation is initiated by a small number of photochemically generated
oxidants: OH, O3, Cl, and NO3.[6,7] The details of the oxidation mechanisms depend on the hydrocarbon-oxidant
combination, but inevitably involve the formation of peroxyl radicals
(RO2). In most atmospheric conditions, the main sink of
RO2 is the reaction with either nitric oxide (NO) or with
the hydroperoxyl radical (HO2). Self- and cross-reactions
of RO2 can be major side channels and are especially important
for aerosol formation because of their potential to form “dimers”:
low-volatility accretion products retaining most or all of the carbon
atoms of the original hydrocarbons.The molecular-level mechanism
of RO2 + R′O2 reactions was identified
as a major open question in atmospheric
science already in 2009.[8] Using multireference
quantum chemical calculations,[9,10] we have recently confirmed
the feasibility of the reaction mechanism postulated by Ghigo et al.[11] and Lee et al.[12] (see Scheme for illustration).
Briefly, all reaction pathways start on an overall singlet potential
energy surface and involve at least two intermediates: RO4R′ tetroxides as postulated already by the Russell mechanism
in 1959[13] and RO···O2···R′O complexes. For the reaction to
be thermodynamically feasible, O2 must be formed in its
triplet ground state. This, in turn, requires that the two alkoxy
radicals (RO and R′O) are also coupled as a triplet, preventing
immediate recombination because of the Pauli principle. The different
reaction channels available to a given RO2 + R′O2 combination then correspond to different fates of 3(RO···OR′) complexes, which are left after
the (presumably very weakly bound) 3O2 has dissociated
from the RO···O2···R′O
system. For example, the dissociation of the cluster leads to RO +
R′O products, and intermolecular hydrogen shifts lead to alcohol
and carbonyl products. A third possibility is an intersystem crossing
(ISC) to the singlet potential energy surface, and subsequent recombination
of the alkoxy radicals to form peroxide (ROOR′) products. Our
calculations on a variety of relatively simple model systems[9] demonstrate that all of these channels may have
high rate constants, on the order of 109 s–1 or more. This suggests that the experimentally observed gas-phase
formation of accretion products in various hydrocarbon oxidation systems[14] may indeed proceed through the ISC of 3(RO···OR′) complexes. However, ISC rates have
so far not been systematically computed for actual SOA-relevant systems
such as monoterpene oxidation products.
Scheme 1
Mechanism for the
Cross-Reaction between Two Peroxyl Radicals (RO2), and
Possible End Products
Monoterpenes, with elemental composition C10H16, are biogenic hydrocarbons believed to be important especially for
the first steps of SOA formation. The reason for this is that they
are large and complex enough to form oxidation products with very
low volatilities, while still having high enough emission rates and
atmospheric concentrations. α-pinene is one of the most important
monoterpenes, accounting for approximately half of all monoterpene
emissions.[15] Reactions between α-pinene
and atmospheric oxidants produce a range of products, including multifunctional
low-volatility accretion products with up to 20 carbon atoms.[16] We studied RO2 formed in the OH-
and NO3-initiated oxidation of α-pinene because their
structures are unambiguously known and because they have relatively
few conformers (compared, for example, to O3-derived RO2). Scheme depicts the major reaction routes for the oxidation of α-pinene
by OH and NO3. Basically, the major route involves the
addition of OH or NO3 to the less highly substituted olefinic
carbon atom[7,17] (H abstraction and/or addition
to the other olefinic carbon are possible, but minor, channels). In
both cases, the product is an alkylfree radical. O2 rapidly
adds to this free radical and forms a peroxyl radical RO2.[18]
Scheme 2
Major Reaction Pathways for the α-pinene + NO3 and α-pinene
+ OH Systems
While atmospheric
chemistry studies of monoterpenes have traditionally
focused mainly on O3- and OH-initiated oxidation, recent
global modeling studies of organic aerosol[19−21] suggest that
a large fraction of SOA[22,23] is produced from the
oxidation of biogenic organic compounds by the nitrate radical (NO3), possibly more than that produced by OH oxidation. Recent
studies have further shown that NO3 oxidation is not only
a night-time process, but happens also during the day.[24,25] In addition, field analysis of organonitrate diurnal variations
demonstrates that NO3 oxidation chemistry makes significant
contribution to the production of organo-nitrates.[26−28] Depending on
their subsequent photochemistry, organo-nitrates formed by NO3-initiated oxidation constitute a large NO reservoir.[29]In this study,
we systematically compute energetics for a large
set of 3(RO···OR′) clusters corresponding
to the relevant RO2 + R′O2 systems. We
consider different stereoisomers of RO derived from the major RO2 formed in the OH- and NO3-initiated oxidation
α-pinene (shown in the right and left sides of Scheme , respectively). Because of
the presence of two stereocenters, there are four stereoisomers in
each system. We denote these as α-pinene, (1) S-alkoxy, R-hydroxy/nitroxy,
(2) R-alkoxy, S-hydroxy/nitroxy, (3) S-alkoxy, S-hydroxy/nitroxy,
and (4) R-alkoxy, R-hydroxy/nitroxy. In our previous work, we developed
a configurational sampling approach for 3(RO···OR′)
clusters.[30] We use the same approach here
to search for the global minimum-energy conformer for each cluster
type, considering the homodimers [i.e., 3(RO···OR′)
clusters, where RO and RO′ are the same species] of all monomer
stereoisomers. Dimers consisting of different monomer stereoisomers
were not considered because of computational reasons (i.e., the large
number of such systems). We are not aware of any reported stereoselectivity
of the reactions shown in Scheme (or of any of the competing RO2 sink reactions),
and thus, the collision of each combination of two stereoisomers could
be presumed equally likely. The set of 3(RO···OR′)
clusters studied here should thus be considered a representative subset.
However, as discussed below, our results on the alkoxy-nitroxy systems
tentatively suggest that the formation of one of the four stereoisomers
may be energetically unfavorable compared to the others.For
the studied 3(RO···OR′) clusters,
we then calculated the ISC rate constant using state-of-the-art multireference
methods. We did not study the H-shift channel in this work because
there are no H atoms to abstract on the tertiary α-oxyl carbon.
The conventional “alcohol + carbonyl” channel is thus
not possible for the studied RO2/RO systems. Hypothetical
H-shifts from other C atoms are likely to have high barriers because
of a combination of steric strain and the formation of diradical products.We note that while the overall self-reaction rate of tertiary peroxy
radicals is often low, OH-substituted tertiary peroxy radicals can
have self-reaction rate coefficients on the order of 10–14 cm3 mol–1 s–1.[7] If accretion product (ROOR′) formation
is the dominant channel for these reactions, they may be atmospherically
relevant despite representing a relatively minor RO2 sink
compared to reactions with NO or HO2.
Theory and Methods
Conformational
Sampling of the Alkoxy Radical Monomers
The systematic conformer
search algorithm in Spartan version 16 was
used for generating all the conformers of the alkoxy monomers (RO•).[31] In this approach, every nonterminal bond is
rotated by 180 degrees for sp2-hybridized atoms and 120
degrees for sp3-hybridized atoms. Possible ring flipping
was also considered during this conformer searching. A molecular mechanics
force-field (MMFF) optimization was then performed to find representative
sets of all the local minima conformers on the potential energy surfaces
(PES). We found a maximum of three conformers for each alkoxy radical
stereoisomer because torsional rotations are limited by the intact
bicyclic α-pinene skeleton (see Scheme ). We used the keyword (“ffhint =
O ∼ ∼6,” denoting
generic divalent O) to avoid the treatment of alkoxy radical oxygens
as anions.[32] (We note that this issue has
been resolved in newer versions of Spartan, from 18 onward). For the
S-alkoxy,R-nitroxy system, conformational sampling
with Spartan 16 yielded only one monomer conformer. This structure
was therefore resampled using Spartan 20, leading to three conformers,
which were then used in the subsequent sampling of 3(RO···OR′)
clusters.
Systematic Conformational Sampling of 3(RO···OR′)
Clusters
The conformational sampling of 3(RO···OR′)
clusters involved several steps. First, thousands of initial conformers
were generated using the artificial bee colony (ABC) algorithm, which
performs rigid-body molecular dynamics.[33,34] The ABC algorithm
requires monomer structures, as well as Lennard-Jones parameters and
partial charges for all atoms in the monomers. Structures and partial
charges were obtained from optimizations and natural bonding orbital
(NBO) calculations at the ωB97X-D/6-31++G** level of theory
using Gaussian16 RevB.01.[35] The Lennard-Jones
parameters were collected from the CHARMM force-field database. We
initially generated 3000 cluster conformers for every combination
of monomer conformers. As described above, each monomer had a maximum
of three conformers, leading to six distinct combinations of two monomer
conformers. Thus, a total of up to 18,000 conformers were generated
for each of the eight studied stereoisomers. Semiempirical optimization
was then carried out using the XTB program and the GFN-xTB (Geometry, Frequency, Noncovalent, eXtended Tight Binding) level
of theory[36] for all the conformers generated
using the ABC algorithm. At this stage, various unwanted reactions,
typically combinations of H-shifts and C–C bond scissions,
took place because of a combination of strained input geometries and
(likely artificially) low reaction barriers at the GFN-xTB level. Section S1 of the Supporting
Information shows some examples of unwanted reactions at the XTB level.
We tested different keyword settings in the XTB program to get rid
of this problem. We found that performing the semiempirical optimizations
with loose optimization criteria helped get rid of most of the unwanted
reactions at least for the clusters studied here. Conformers within
10 kcal/mol of the lowest-energy structure for each system were then
selected for density functional level (DFT) calculations. Because
of the large size of the α-pinene systems, computational costs
prevented us from carrying out calculations at the same level as in
our previous studies (coupled cluster singles, doubles and perturbative
triples [CCSD(T)] energies on ωB97X-D/aug-cc-pVTZ structures).
Therefore, DFT optimizations were performed at the ωB97X-D/6-31++G**
level of theory[37,38] using Gaussian16 RevB.01.[39] Electronic energies and dipole moments were
then collected from all conformers, and duplicate structures (with
identical energies and dipole moments) were eliminated. Finally, ωB97X-D/6-31++G**
frequency calculations were performed on conformers within 5 kcal/mol
of the lowest-energy structure for each system. We note that while
binding energetics computed at this level should be considered qualitative,
the actual cluster geometries used for the ISC rate calculations are
likely much less sensitive to the size of the basis set. The ISC rates
presented here should thus be comparable to our previous studies.
ISC Rate Calculation
3(RO···OR′)
clusters can undergo
ISC to the singlet surface, allowing for (presumably near-instantaneous)
recombination to covalently bound ROOR accretion products. The details
of our ISC rate calculations are explained in our previous work.[9,10] In brief, the global minimum conformers from the DFT calculations
described above, as well as one other conformer per system (the lowest-energy
conformer that had a clearly different bonding pattern compared to
the global minimum), were selected, and the energies of the lowest
four singlet and triplet states were computed at the XMC-QDPT2/6-311++G**
level of theory using Firefly, version 8.2.0.[40] The ISC rate coefficient, kISC (in units
of s–1), was then obtained using the following formula:where ⟨φ(T) | ĤSO |
φ(S)⟩ is the spin-orbit
coupling matrix element (SOCME) in cm–1, and F is Franck–Condon’s factor (which
depends on the energy gap between the states). We tested several different
active spaces to check which sets of orbitals contribute to the state
averaging. We found that the (6,4) active space (six electrons in
four orbitals) represents a good compromise between the computational
cost and accuracy and is sufficient to describe the states of interest.
The details of the active space selection followed the philosophy
described in our previous work.[10] The selected
molecular orbitals, mainly formed from p-atomic orbitals
of the radical oxygen atoms, are those that give the largest contributions
(configuration interaction weights of more than 0.2) to the relevant
low-lying electronic states (T1...T4 and S1...S4). Figure shows the orbitals included in the active space for
two of the eight studied systems (one alkoxy-hydroxy and one alkoxy-nitroxy
radical pair). The orbitals for other stereoisomer pairs look similar.
ISC rates were computed for transitions from the triplet ground state
T1 to the four lowest singlet states (S1...S4).
Figure 1
Orbitals included in the (6,4) active space for α-pinene,
(S-alkoxy,R-hydroxy)2 and α-pinene, (R-alkoxy,R-nitroxy)2. HOMO and LUMO refer to the highest occupied
and lowest unoccupied molecular orbitals, respectively. Color coding:
gray = C, red = O, white = H, and blue = N.
Orbitals included in the (6,4) active space for α-pinene,
(S-alkoxy,R-hydroxy)2 and α-pinene, (R-alkoxy,R-nitroxy)2. HOMO and LUMO refer to the highest occupied
and lowest unoccupied molecular orbitals, respectively. Color coding:
gray = C, red = O, white = H, and blue = N.The matrix element of the spin-orbit coupling interaction between
triplet T1-T4 and singlet states S1-S4 was calculated at the CASSCF(6,4)/ 6-311++G** level
of theory, but using the XMC-QDPT2/6-311++G** energies, with the general
atomic and molecular electronic structure system (GAMESS-US) program.[41]
Results and Discussion
Minimum-energy
conformers of the RO monomers are shown in Figure , while the minimum-energy
conformers of the 3(RO···OR′) clusters
are given in Figure . (Structures and relative energies of local minima are given in Section S4 of the Supporting Information). The
relative binding energies of the 3(RO···OR′)
clusters (expressed in terms of the energies and Gibbs free energies
of the 3(RO···OR′) → RO +
R′O reaction) are given in Table . Consistent with the DFT results on smaller
functionalized RO in our previous study,[9] the electronic energies of the dissociation reaction mostly vary
between about 9 and 12 kcal/mol, while the corresponding Gibbs free
energies vary between about 1 and –3 kcal/mol. These values
are typical for fairly weakly bonded clusters in the atmosphere. The
α-pinene,(S-alkoxy,R-nitroxy)2 cluster is an outlier, with considerably stronger bonding
than any of the other clusters. As seen from Figure , this cluster has a direct interaction between
the alkoxy radical on one monomer and the nitroxy group of the other
monomer. Most other alkoxy-nitroxy clusters in this study, as well
as the simpler alkoxy-nitroxy clusters in our previous study,[9] had global minimum structures (at the at ωB97X-D
level) characterized by nitroxy-nitroxy interactions. The α-pinene,(R-alkoxy,S-nitroxy)2 cluster
also contains an alkoxy-nitroxy interaction, but has a much lower
binding energy. Upon closer inspection, the anomalous binding energy
of the α-pinene,(S-alkoxy,R-nitroxy)2 system is driven mainly by differences in monomer
energies: the α-pinene, S-alkoxy,R-nitroxy radical monomer is between 1.6 and 4.0 kcal/mol higher in
absolute energy than the other three alkoxy-nitroxy radicals, presumably
because of less favorable interactions between the nitroxy group and
the rest of the molecule in the monomer. As the monomer energy is
multiplied by two in the binding energy calculation, this alone leads
to a difference between 3.2 and 8.0 kcal/mol in the binding energies
in favor of the α-pinene, (S-alkoxy,R-nitroxy)2 system. In contrast, the differences
in absolute energies of the four different alkoxy-nitroxy clusters
shown in Figure are
less than 5 kcal/mol. To ensure that the presented α-pinene,
(S-alkoxy,R-nitroxy)2 structure is not a computational artifact, we have recomputed its
binding energy with the same basis set, but using four different functionals
(PW6B95D3, M05-2X, M06-2X, and LC-wPBE, using GD3 empirical dispersion),
and found similar results, as obtained at the ωB97X-D/6-31++G**
level. We also manually constructed clusters with similar bonding
patterns for the other three systems in order to rule out the possibility
that the “anomalous” bonding pattern is actually the
correct one but was simply missed for the other three cases because
of the limitations of our conformational sampling algorithm. However,
these did not lead to lower-energy clusters than those already discovered
in the sampling. Based on these test calculations, we tentatively
conclude that the anomalously strong binding of the α-pinene,
(S-alkoxy,R-nitroxy)2 system represents an example of genuinely strong stereoselectivity
in cluster formation. However, we note that the high (unfavorable)
energy of the corresponding monomer, assuming a similar pattern, also
found for the parent peroxy-nitroxy radicals, may also cause stereoselectivity
in the formation reaction: the S-peroxy,R-nitroxy stereoisomer may have a much lower yield than the others.
Figure 2
Optimized
lowest-energy structures at the ωB97X-D/6-31++G**
level of theory of different stereoisomers of the hydroxy-alkoxy and
nitroxy-alkoxy radicals formed in the oxidation of α-pinene
by OH and NO3, assuming initial radical addition to the
secondary carbon atom (as depicted in Scheme , followed by the loss of one oxygen from
the peroxy radicals to form alkoxy radicals). Color coding: gray =
C, white = H, red = O, and blue = N.
Figure 3
Optimized
lowest-energy structures of the 3(RO···OR′)
clusters studied in this work at the ωB97X-D/6-31++G** level
of theory. Color coding: gray = C, white = H, red = O, and blue =
N.
Table 1
Electronic Energies
(in kcal/mol)
and Gibbs Free Energies (in kcal/mol at 298 K and 1 atm Reference
Pressure) for the 3(RO···OR′) →
RO + R′O Reaction Computed at ωB97X-D/6-31++G** Level
of Theory
3(RO···OR′) cluster
ΔE in kcal/mol
ΔG in kcal/mol
O···O
radical distance in Å
α-pinene, (S-alkoxy,R-hydroxy)2
+9.14
–3.12
3.31
α-pinene, (R-alkoxy,S-hydroxy)2
+9.10
–2.96
3.35
α-pinene,
(S-alkoxy,S-hydroxy)2
+9.76
–2.22
4.13
α-pinene, (R-alkoxy,R-hydroxy)2
+11.96
+0.97
3.50
α-pinene, (R-alkoxy,R-nitroxy)2
+10.71
–1.89
3.19
α-pinene, (R-alkoxy,S-nitroxy)2
+10.18
–1.63
5.49
α-pinene, (S-alkoxy,S-nitroxy)2
+10.83
–2.61
3.48
α-pinene, ( S-alkoxy,R-nitroxy)2
+18.19
+6.34
4.32
Optimized
lowest-energy structures at the ωB97X-D/6-31++G**
level of theory of different stereoisomers of the hydroxy-alkoxy and
nitroxy-alkoxy radicals formed in the oxidation of α-pinene
by OH and NO3, assuming initial radical addition to the
secondary carbon atom (as depicted in Scheme , followed by the loss of one oxygen from
the peroxy radicals to form alkoxy radicals). Color coding: gray =
C, white = H, red = O, and blue = N.Optimized
lowest-energy structures of the 3(RO···OR′)
clusters studied in this work at the ωB97X-D/6-31++G** level
of theory. Color coding: gray = C, white = H, red = O, and blue =
N.Even
if the S-alkoxy,R-nitroxy
system is excluded, the nitroxy-alkoxy radical dimers are generally
somewhat more strongly bound than their hydroxy-alkoxy counterparts,
which is surprising as the latter have H-bonds while the former do
not. This is likely explained by the presence of intramolecular H-bonds
in the hydroxy-alkoxy radical monomers. These act to decrease the
energies (and free energies) of the monomers, leading to relatively
weaker binding of the clusters. The distance between the two radical
oxygen atoms did not correlate significantly with the cluster binding
energy, likely because even the shortest distances were above 3 Å
(implying little interaction).The overall ISC rate constants
for our studied systems (corresponding
to a sum of the four-individual computed ISC rates) are given in Table . (Data for local
minima are given in Section S2 of the Supporting
Information.) In our previous work comparing a series of relatively
simple functionalized RO,[9,10] we observed that the
ISC rates strongly depended on the conformation of the 3(RO···OR′) clusters and displayed extreme stereoselectivity
for the two systems included in the study that possessed stereocenters: R,S-BuOH-O···O-BuOH and R,S-PrNO3-O···O-PrNO3. The present
systems also display substantial stereoselectivity: the ISC rates
for the global minimum conformers of different stereoisomer pairs
of hydroxy-alkoxy and nitroxy-alkoxy triplet clusters vary by almost
three and over four orders of magnitude, respectively. The variation
between different conformers of the same system is also large, up
to four orders of magnitude for the studied pairs of global and local
minima. Notably, for some of the systems where the global minimum
conformer had a relatively low ISC rate, the local minimum conformer
(with a different binding pattern) had a substantially higher rate
or vice versa. All computed ISC rates are in any case fairly fast,
exceeding 107 s–1 for all but three of
the 16 cases (when including the local minima) and 108 s–1 for over half the cases.
Table 2
ISC Rate
Constants for The Studied
Systems at 298 K, Based on Energies of Triplet and Singlet States
Computed Using XMC-QDPT2(10,8)/6-311++G** and Matrix Elements of the
Spin-Orbit Coupling Interaction between T1-T4 and S1-S4 States Computed at the CASSCF(6,4)/6-31++G**
Level
3(RO···OR′)
cluster
ΣkISC (s–1)
α-pinene, (S-alkoxy,R-hydroxy)2
1.18 ×
1010
α-pinene, (R-alkoxy,S-hydroxy)2
5.68 × 107
α-pinene, (S-alkoxy,S-hydroxy)2
9.43 × 109
α-pinene, (R-alkoxy,R-hydroxy)2
1.51 × 1010
α-pinene,
(R-alkoxy,R-nitroxy)2
1.62 × 1010
α-pinene, (R-alkoxy,S-nitroxy)2
1.02 ×
106
α-pinene, (S-alkoxy,S-nitroxy)2
5.68 × 1010
α-pinene, ( S-alkoxy,R-nitroxy)2
2.06 × 108
Section S2 of the Supporting Information
shows the relative energies of all considered electronic states, as
well as the SOCME values, and the ISC rates for individual transitions.
The overall ISC rate of the global minimum conformers is dominated
by the ISC between T1 and S1 for all the studied
systems except for two: (R-alkoxy,S-nitroxy)2 and (S-alkoxy,S-nitroxy)2. In the former case, the SOCME between T1 and S1 is zero, presumably due to the very large
distance (5.49 Å) between the radical centers,[42] leading to a zero ISC rate between these states and a low
overall ISC rate. In the latter case, the SOCME between the T1 and S1 states is small (0.17 cm–1), leading to a modest ISC rate for this transition (4.62 ×
107 s–1) despite the fact that the energy
gap is negative (i.e., the S1 state is lower than T1 for this system, unlike the other seven). However, the overall
ISC rate for this system is still high because of the exceptionally
high ISC rates between T1 and S2 as well as
S3.The variation in the ISC rate between T1 and S1, which determines the overall ISC rate for the
remaining six systems,
is driven almost exclusively by the variations in the SOCME, as the
corresponding energy gaps are very low (less than 80 cm–1). The low energy gap between T1 and S1 is
consistent with the large distance between the radical centers (Table ) and the consequent
lack of strong interactions between them. The variations in the SOCME
between T1 and S1 can in turn be related to
the orientation of the C–O bonds relative to each other. The
wavefunctions of the T1 and S1 states have almost
the same electronic configuration, with contributions mainly from
the 2p atomic orbitals (AO).[42] Thus, the
SOCME depends on the overlap between 2p-AOs, belonging to the radical
oxygen atoms of two radicals, which in turn depends on their relative
orientation.[42,43] In the future, for example, machine-learning
approaches could be used to cost-effectively predict SOCME and thus
ISC rates for 3(RO···OR′) systems
based on the relative orientation of the alkoxy groups.We further
tested the validity of our hypothesis that an ISC in
the 3(RO···OR′) clusters will inevitably
lead to prompt 1ROOR′ formation. This was done by
simply reoptimizing the obtained 3(RO···OR′)
minimum-energy structures (shown in Figure ) on the singlet potential energy surface
using the same DFT method (ωB97X-D/6-31++G**). The results of
the singlet optimization are shown in Section S3 of the Supporting Information. For five of our eight systems,
the optimization yielded the expected formation of 1ROOR′
structures. For the remaining three cases, all of which corresponded
to clusters in which the radical centers were relatively far from
each other, various other reactions occurred instead, including intramolecular
H-shifts and C–C scissions. We caution that while both C–C
scissions and H-shifts are well-documented reaction classes of alkoxy
radicals, such reactions tend to have at least moderate energy barriers
and would not be expected to occur in simple optimizations (energy
minimizations). These reactions may thus be artifacts of the relatively
low-level optimization method, which is unable to properly treat the 1(RO···OR′) starting point as an open-shell
singlet. In any case, these test calculations suggest that 1ROOR′ formation is indeed likely to be the major, although
not necessarily the exclusive, end result of an ISC in our 3(RO···OR′) systems.
Conclusions
Self-
and cross-reactions of peroxyl radicals play important roles
in both atmospheric and combustion chemistry. For simple peroxyl radicals
in the gas phase, the main channels of these reactions correspond
to the formation of either two alkoxy radicals or carbonyl and alcohol
products. For more complex reactants, experimental studies indicate
that also the formation of ROOR′ accretion products is a competitive
pathway. Gas-phase accretion product formation provides an efficient
mechanism for atmospheric aerosol formation, as it dramatically lowers
the volatility of the participating compounds in a single step. Computational
studies by us and others suggest that ROOR′ formation is preceded
by ISC in weakly bound 3(RO···OR′)
complexes formed as an intermediate step in all peroxyl radical self-
and cross-reactions. However, actual ISC rates have never been computed
for large 3(RO···OR′) systems corresponding,
for example, to monoterpene oxidation products. In this study, we
first determined the structures and binding energies of 3(RO···OR′) complexes formed in the self-reactions
of a set of RO2 stereoisomers produced in the OH- and NO3-initiated oxidation of α-pinene. The overall binding
energies were fairly weak (around 10 kcal/mol in electronic energy
for all but one system) despite the presence of H-bonds in the OH-oxidized
systems, implying rapid dissociation rates for the 3(RO···OR′)
complexes. The computed ISC rates were also high, exceeding 106 s–1 for all systems and 1010 s–1 for some systems. At least the fastest rates
should be competitive in atmospheric conditions, confirming the hypothesis
that the proposed mechanism can explain accretion product formation
observed in α-pinene oxidation experiments. The significant
variation of the calculated ISC rates between stereoisomers further
implies that accretion product formation might be stereoselective:
only some of the RO2 diastereomers formed in monoterpene
oxidation may be able to form ROOR′ effectively. However, the
large variation in ISC rates between low-energy conformers of the
same stereoisomers is likely to decrease the stereoselectivity of
ROOR′ formation.
Authors: Nga Lee Ng; Steven S Brown; Alexander T Archibald; Elliot Atlas; Ronald C Cohen; John N Crowley; Douglas A Day; Neil M Donahue; Juliane L Fry; Hendrik Fuchs; Robert J Griffin; Marcelo I Guzman; Hartmut Herrmann; Alma Hodzic; Yoshiteru Iinuma; José L Jimenez; Astrid Kiendler-Scharr; Ben H Lee; Deborah J Luecken; Jingqiu Mao; Robert McLaren; Anke Mutzel; Hans D Osthoff; Bin Ouyang; Benedicte Picquet-Varrault; Ulrich Platt; Havala O T Pye; Yinon Rudich; Rebecca H Schwantes; Manabu Shiraiwa; Jochen Stutz; Joel A Thornton; Andreas Tilgner; Brent J Williams; Rahul A Zaveri Journal: Atmos Chem Phys Date: 2017 Impact factor: 6.133
Authors: Ben H Lee; Claudia Mohr; Felipe D Lopez-Hilfiker; Anna Lutz; Mattias Hallquist; Lance Lee; Paul Romer; Ronald C Cohen; Siddharth Iyer; Theo Kurtén; Weiwei Hu; Douglas A Day; Pedro Campuzano-Jost; Jose L Jimenez; Lu Xu; Nga Lee Ng; Hongyu Guo; Rodney J Weber; Robert J Wild; Steven S Brown; Abigail Koss; Joost de Gouw; Kevin Olson; Allen H Goldstein; Roger Seco; Saewung Kim; Kevin McAvey; Paul B Shepson; Tim Starn; Karsten Baumann; Eric S Edgerton; Jiumeng Liu; John E Shilling; David O Miller; William Brune; Siegfried Schobesberger; Emma L D'Ambro; Joel A Thornton Journal: Proc Natl Acad Sci U S A Date: 2016-01-25 Impact factor: 11.205
Authors: A W Rollins; E C Browne; K-E Min; S E Pusede; P J Wooldridge; D R Gentner; A H Goldstein; S Liu; D A Day; L M Russell; R C Cohen Journal: Science Date: 2012-09-07 Impact factor: 47.728