| Literature DB >> 34873249 |
Young Joo Lee1, Young Sol Hwang2, Junetae Kim3, Sei-Hyun Ahn4, Byung Ho Son4, Hee Jeong Kim4, Beom Seok Ko4, Jisun Kim4, Il Yong Chung4, Jong Won Lee4, Sae Byul Lee5.
Abstract
We aimed to develop a prediction MammaPrint (MMP) genomic risk assessment nomogram model for hormone-receptor positive (HR+) and human epidermal growth factor receptor-2 negative (HER2-) breast cancer and minimal axillary burden (N0-1) tumors using clinicopathological factors of patients who underwent an MMP test for decision making regarding adjuvant chemotherapy. A total of 409 T1-3 N0-1 M0 HR + and HER2- breast cancer patients whose MMP genomic risk results and clinicopathological factors were available from 2017 to 2020 were analyzed. With randomly selected 306 patients, we developed a nomogram for predicting a low-risk subgroup of MMP results and externally validated with remaining patients (n = 103). Multivariate analysis revealed that the age at diagnosis, progesterone receptor (PR) score, nuclear grade, and Ki-67 were significantly associated with MMP risk results. We developed an MMP low-risk predictive nomogram. With a cut off value at 5% and 95% probability of low-risk MMP, the nomogram accurately predicted the results with 100% positive predictive value (PPV) and negative predictive value respectively. When applied to cut-off value at 35%, the specificity and PPV was 95% and 86% respectively. The area under the receiver operating characteristic curve was 0.82 (95% confidence interval [CI] 0.77 to 0.87). When applied to the validation group, the nomogram was accurate with an area under the curve of 0.77 (95% CI 0.68 to 0.86). Our nomogram, which incorporates four traditional prognostic factors, i.e., age, PR, nuclear grade, and Ki-67, could predict the probability of obtaining a low MMP risk in a cohort of high clinical risk patients. This nomogram can aid the prompt selection of patients who does not need additional MMP testing.Entities:
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Year: 2021 PMID: 34873249 PMCID: PMC8648770 DOI: 10.1038/s41598-021-02992-8
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Baseline characteristics of the patient cohort.
| Variables | MMP low-risk | MMP high-risk | |
|---|---|---|---|
| (N = 240) | (N = 169) | ||
| N (%) | N (%) | ||
| Age at diagnosis (mean ± SD) | 53.3 ± 9.3 | 47.9 ± 9.8 | < 0.001 |
| < 0.001 | |||
| Grade I | 19 (8.0%) | 3 (1.8%) | |
| Grade II | 218 (90.8%) | 139 (82.2%) | |
| Grade III | 3 (1.2%) | 27 (16.0%) | |
| < 0.001 | |||
| Grade I | 2 (0.8%) | 0 (0.0%) | |
| Grade II | 235 (97.9%) | 140 (82.8%) | |
| Grade III | 3 (1.3%) | 29 (17.2%) | |
| < 0.001 | |||
| Negative | 0 (0.0%) | 0 (0.0%) | |
| Weak | 0 (0.0%) | 0 (0.0%) | |
| Intermediate | 2 (0.8%) | 6 (3.6%) | |
| Strong | 238 (99.2%) | 163 (96.4%) | |
| < 0.001 | |||
| Negative | 16 (6.6%) | 21 (12.4%) | |
| Weak | 12 (5.0%) | 25 (14.8%) | |
| Intermediate | 47 (19.6%) | 33 (19.5%) | |
| Strong | 165 (68.8%) | 90 (53.3%) | |
| < 0.001 | |||
| Negative | 147 (61.2%) | 67 (40.4%) | |
| Positive | 93 (38.8%) | 99 (59.6%) | |
| < 0.001 | |||
| 0 | 78 (32.5%) | 56 (33.1%) | |
| 1 | 109 (45.4%) | 51 (30.2%) | |
| 2 | 43 (17.9%) | 33 (19.5%) | |
| 3 | 10 (4.2%) | 29 (17.2%) | |
| < 0.001 | |||
| Low Ki-67 < 20% | 177 (73.8%) | 57 (33.7%) | |
| High Ki-67 ≥ 20% | 63 (26.2%) | 112 (66.3%) | |
| 0.675 | |||
| Total mastectomy | 69 (28.8%) | 44 (26.3%) | |
| Breast conservation surgery | 171 (71.2%) | 123 (73.7%) | |
| 0.056 | |||
| Axillary dissection | 3 (1.3%) | 0 (0.0%) | |
| Sentinel node biopsy | 133 (55.6%) | 78 (46.7%) | |
| Axillary dissection after sentinel node biopsy | 103 (43.1%) | 89 (53.3%) | |
| 0.045 | |||
| T1 | 124 (51.7%) | 67 (40.1%) | |
| T2 | 111 (46.2%) | 98 (58.7%) | |
| T3 | 5 (2.1%) | 2 (1.2%) | |
| 0.416 | |||
| N0 | 9 (3.8%) | 10 (6.0%) | |
| N1 | 231 (96.2%) | 157 (94.0%) | |
| 0.449 | |||
| Stage I | 31 (12.9%) | 16 (9.6%) | |
| Stage II | 204 (85.0%) | 149 (89.2%) | |
| Stage III | 5 (2.1%) | 2 (1.2%) | |
| Tumor size (cm) (mean ± SD) | 2.2 ± 1.1 | 2.4 ± 1.0 | 0.018 |
| 0.942 | |||
| 0 | 9 (3.8%) | 8 (4.8%) | |
| 1 | 150 (62.5%) | 105 (62.9%) | |
| 2 | 66 (27.5%) | 45 (26.9%) | |
| 3 | 15 (6.2%) | 9 (5.4%) | |
| Largest positive node size (mm) | 5.4 ± 3.9 | 6.3 ± 4.8 | 0.042 |
| < 0.001 | |||
| Premenopause | 112 (46.7%) | 113 (66.9%) | |
| Postmenopause | 128 (53.3%) | 55 (32.5%) | |
| Unknown | 0 (0.0%) | 1 (0.6%) |
MMP, MammaPrint; SD, standard deviation.
Characteristics of validation and training groups.
| Variables | Validation set | Training set | |
|---|---|---|---|
| (N = 103) | (N = 306) | ||
| N (%) | N (%) | ||
| Age at diagnosis (mean ± SD*) | 51.2 ± 10.2 | 51.0 ± 9.8 | 0.893 |
| 0.496 | |||
| Low risk | 57 (55.3%) | 183 (59.8%) | |
| High risk | 46 (44.7%) | 123 (40.2%) | |
| 0.949 | |||
| Grade I | 6 (5.8%) | 16 (5.2%) | |
| Grade II | 90 (87.4%) | 267 (87.3%) | |
| Grade III | 7 (6.8%) | 23 (7.5%) | |
| 0.656 | |||
| Grade I | 1 (1.0%) | 1 (0.3%) | |
| Grade II | 95 (92.2%) | 280 (91.5%) | |
| Grade III | 7 (6.8%) | 25 (8.2%) | |
| 0.685 | |||
| Negative | 0 (0.0%) | 0 (0.0%) | |
| Weak | 0 (0.0%) | 0 (0.0%) | |
| Intermediate | 1 (1.0%) | 7 (2.3%) | |
| Strong | 102 (99.0%) | 299 (97.7%) | |
| 0.132 | |||
| Negative | 15 (14.6%) | 22 (7.2%) | |
| Weak | 7 (6.8%) | 30 (9.8%) | |
| Intermediate | 20 (19.4%) | 60 (19.6%) | |
| Strong | 61 (59.2%) | 194 (63.4%) | |
| 0.772 | |||
| Negative | 52 (51.0%) | 162 (53.3%) | |
| Positive | 50 (49.0%) | 142 (46.7%) | |
| 0.277 | |||
| 0 | 40 (38.8%) | 94 (30.7%) | |
| 1 | 40 (38.8%) | 120 (39.2%) | |
| 2 | 17 (16.5%) | 59 (19.3%) | |
| 3 | 6 (5.8%) | 33 (10.8%) | |
| 0.718 | |||
| Low Ki-67 < 20% | 61 (59.2%) | 173 (56.5%) | |
| High Ki-67 ≥ 20% | 42 (40.8%) | 133 (43.5%) | |
| 1.000 | |||
| Total mastectomy | 29 (28.2%) | 84 (27.6%) | |
| Breast conservation surgery | 74 (71.8%) | 220 (72.4%) | |
| 0.947 | |||
| Axillary dissection | 1 (1.0%) | 2 (0.7%) | |
| Sentinel node biopsy | 53 (51.5%) | 158 (52.1%) | |
| Axillary dissection after sentinel node Biopsy | 49 (47.6%) | 143 (47.2%) | |
| 0.736 | |||
| T1 | 47 (45.6%) | 144 (47.4%) | |
| T2 | 55 (53.4%) | 154 (50.7%) | |
| T3 | 1 (1.0%) | 6 (2.0%) | |
| 0.480 | |||
| N0 | 3 (2.9%) | 16 (5.3%) | |
| N1 | 100 (97.1%) | 288 (94.7%) | |
| 0.795 | |||
| Stage I | 12 (11.7%) | 35 (11.5%) | |
| Stage II | 90 (87.4%) | 263 (86.5%) | |
| Stage III | 1 (1.0%) | 6 (2.0%) | |
| Tumor size (cm) (mean ± SD) | 2.2 ± 1.1 | 2.3 ± 1.1 | 0.734 |
| 0.262 | |||
| 0 | 1 (1.0%) | 16 (5.3%) | |
| 1 | 64 (62.1%) | 191 (62.8%) | |
| 2 | 31 (30.1%) | 80 (26.3%) | |
| 3 | 7 (6.8%) | 17 (5.6%) | |
| Largest positive node size (mm) | 6.5 ± 4.9 | 5.5 ± 4.1 | 0.064 |
| 0.776 | |||
| Premenopause | 55 (53.4%) | 170 (55.6%) | |
| Postmenopause | 48 (46.6%) | 135 (44.1%) | |
| Unknown | 0 (0.0%) | 1 (0.3%) |
SD, standard deviation.
Multivariate logistic regression model.
| Variables | Multivariate model | ||||
|---|---|---|---|---|---|
| Standard error | Z score | 95% confidence interval | |||
| Age | 0.653554 | 0.016 | 3.92 | 0.000 | 0.032–0.098 |
| Progesterone receptor status | 0.1812972 | 0.780 | − 5.61 | 0.005 | 0.054–0.307 |
| Nuclear grade | − 2.223743 | 0.064 | − 2.85 | 0.004 | − 3.754–0.693 |
| Ki-67 | − 0.0686273 | 0.012 | 1.06 | 0.000 | − 1.687–0.044 |
Figure 1Nomogram to predict a MammaPrint low risk. Age, Progesterone receptor, nuclear grade, and Ki-67 levels were finally selected to develop the model.
Figure 2Receiver operating characteristic curve of nomogram. (a) Training group of 312 patients. (b) Validation group of 97 patients.
Sensitivity, specificity, positive predictive, and negative predictive values according to various cutoff values.
| Cutoff value of calculated probability achieving MMP low risk (%) | Risk assessment by nomogram | Number of total patients (N = 306) | Number of patients with High risk MMP (N = 123) | Number of patients with Low risk of MMP (N = 183) | Sensitivity (%) | Specificity (%) | PPV (%) | NPV (%) |
|---|---|---|---|---|---|---|---|---|
| 5 | High risk | 16 | 16 | 0 | 13 | 100 | 100 | 63 |
| Low risk | 290 | 107 | 183 | |||||
| 10 | High risk | 31 | 28 | 3 | 22 | 98 | 90 | 65 |
| Low risk | 275 | 95 | 180 | |||||
| 30 | High risk | 53 | 47 | 6 | 38 | 96 | 88 | 69 |
| Low risk | 253 | 76 | 177 | |||||
| 35 | High risk | 61 | 53 | 8 | 43 | 95 | 86 | 71 |
| Low risk | 245 | 70 | 175 | |||||
| 50 | High risk | 94 | 74 | 20 | 60 | 89 | 78 | 76 |
| Low risk | 212 | 49 | 163 | |||||
| 70 | High risk | 154 | 94 | 60 | 76 | 67 | 61 | 80 |
| Low risk | 152 | 29 | 123 | |||||
| 88 | High risk | 259 | 116 | 143 | 94 | 21 | 44 | 85 |
| Low risk | 47 | 7 | 40 | |||||
| 90 | High risk | 275 | 119 | 156 | 96 | 14 | 43 | 87 |
| Low risk | 31 | 4 | 27 | |||||
| 95 | High risk | 302 | 123 | 179 | 100 | 2 | 40 | 100 |
| Low risk | 4 | 0 | 4 |
MMP, Mammprint test; PPV, positive predictive value; NPV, negative predictive value.
Figure 3Automatic calculator using Microsoft Excel worksheets. (a) 95% probability of low Mammaprint risk with age 67, strong PR (8), low Ki67 (5%) and tumor grade 2. (b) 4% probability of low Mammaprint risk with age 52, intermediate PR (5), high Ki67 (40%) and high tumor grade.