Literature DB >> 34857953

Large-scale integration of the plasma proteome with genetics and disease.

Egil Ferkingstad1, Patrick Sulem2, Bjarni A Atlason1, Gardar Sveinbjornsson1, Magnus I Magnusson1, Edda L Styrmisdottir1, Kristbjorg Gunnarsdottir1, Agnar Helgason1,3, Asmundur Oddsson1, Bjarni V Halldorsson1,4, Brynjar O Jensson1, Florian Zink1, Gisli H Halldorsson1, Gisli Masson1, Gudny A Arnadottir1, Hildigunnur Katrinardottir1, Kristinn Juliusson1, Magnus K Magnusson1,5, Olafur Th Magnusson1, Run Fridriksdottir1, Saedis Saevarsdottir1,5, Sigurjon A Gudjonsson1, Simon N Stacey1, Solvi Rognvaldsson1, Thjodbjorg Eiriksdottir1, Thorunn A Olafsdottir1,5, Valgerdur Steinthorsdottir1, Vinicius Tragante1, Magnus O Ulfarsson1,6, Hreinn Stefansson1, Ingileif Jonsdottir1,5, Hilma Holm1, Thorunn Rafnar1, Pall Melsted1,7, Jona Saemundsdottir1, Gudmundur L Norddahl1, Sigrun H Lund1, Daniel F Gudbjartsson1,7, Unnur Thorsteinsdottir1,5, Kari Stefansson8,9.   

Abstract

The plasma proteome can help bridge the gap between the genome and diseases. Here we describe genome-wide association studies (GWASs) of plasma protein levels measured with 4,907 aptamers in 35,559 Icelanders. We found 18,084 associations between sequence variants and levels of proteins in plasma (protein quantitative trait loci; pQTL), of which 19% were with rare variants (minor allele frequency (MAF) < 1%). We tested plasma protein levels for association with 373 diseases and other traits and identified 257,490 associations. We integrated pQTL and genetic associations with diseases and other traits and found that 12% of 45,334 lead associations in the GWAS Catalog are with variants in high linkage disequilibrium with pQTL. We identified 938 genes encoding potential drug targets with variants that influence levels of possible biomarkers. Combining proteomics, genomics and transcriptomics, we provide a valuable resource that can be used to improve understanding of disease pathogenesis and to assist with drug discovery and development.
© 2021. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2021        PMID: 34857953     DOI: 10.1038/s41588-021-00978-w

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  50 in total

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Journal:  Science       Date:  2018-08-02       Impact factor: 47.728

2.  Genomic and drug target evaluation of 90 cardiovascular proteins in 30,931 individuals.

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Review 3.  Nucleic Acid Ligands With Protein-like Side Chains: Modified Aptamers and Their Use as Diagnostic and Therapeutic Agents.

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7.  The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.

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Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

8.  Genomic atlas of the human plasma proteome.

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Journal:  Nature       Date:  2018-06-06       Impact factor: 49.962

9.  15 years of genome-wide association studies and no signs of slowing down.

Authors:  Ruth J F Loos
Journal:  Nat Commun       Date:  2020-11-19       Impact factor: 14.919

10.  Phenome-wide Mendelian randomization mapping the influence of the plasma proteome on complex diseases.

Authors:  Jie Zheng; Valeriia Haberland; Denis Baird; Venexia Walker; Philip C Haycock; Mark R Hurle; Alex Gutteridge; Pau Erola; Yi Liu; Shan Luo; Jamie Robinson; Tom G Richardson; James R Staley; Benjamin Elsworth; Stephen Burgess; Benjamin B Sun; John Danesh; Heiko Runz; Joseph C Maranville; Hannah M Martin; James Yarmolinsky; Charles Laurin; Michael V Holmes; Jimmy Z Liu; Karol Estrada; Rita Santos; Linda McCarthy; Dawn Waterworth; Matthew R Nelson; George Davey Smith; Adam S Butterworth; Gibran Hemani; Robert A Scott; Tom R Gaunt
Journal:  Nat Genet       Date:  2020-09-07       Impact factor: 38.330

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  25 in total

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