Literature DB >> 36180795

Stroke genetics informs drug discovery and risk prediction across ancestries.

Aniket Mishra1, Rainer Malik2, Tsuyoshi Hachiya3, Tuuli Jürgenson4,5, Shinichi Namba6, Daniel C Posner7, Frederick K Kamanu8,9, Masaru Koido10,11, Quentin Le Grand1, Mingyang Shi11, Yunye He11, Marios K Georgakis2,12,13, Ilana Caro1, Kristi Krebs4, Yi-Ching Liaw14,15, Felix C Vaura16,17, Kuang Lin18, Bendik Slagsvold Winsvold19,20,21, Vinodh Srinivasasainagendra22, Livia Parodi12,13, Hee-Joon Bae23, Ganesh Chauhan24, Michael R Chong25,26, Liisa Tomppo27, Rufus Akinyemi28,29, Gennady V Roshchupkin30,31, Naomi Habib32, Yon Ho Jee33, Jesper Qvist Thomassen34, Vida Abedi35,36, Jara Cárcel-Márquez37,38, Marianne Nygaard39,40, Hampton L Leonard41,42,43, Chaojie Yang44,45, Ekaterina Yonova-Doing46,47, Maria J Knol30, Adam J Lewis48, Renae L Judy49, Tetsuro Ago50, Philippe Amouyel51,52,53, Nicole D Armstrong54, Mark K Bakker55, Traci M Bartz56,57, David A Bennett58, Joshua C Bis56, Constance Bordes1, Sigrid Børte20,59,60, Anael Cain32, Paul M Ridker61,62, Kelly Cho7, Zhengming Chen18,63, Carlos Cruchaga64,65, John W Cole66,67, Phil L de Jager13,68, Rafael de Cid69, Matthias Endres70,71,72,73, Leslie E Ferreira74, Mirjam I Geerlings75, Natalie C Gasca57, Vilmundur Gudnason76,77, Jun Hata78, Jing He48, Alicia K Heath79, Yuk-Lam Ho7, Aki S Havulinna80,81, Jemma C Hopewell82, Hyacinth I Hyacinth83, Michael Inouye46,84,85,86,87, Mina A Jacob88, Christina E Jeon89, Christina Jern90,91, Masahiro Kamouchi92, Keith L Keene93, Takanari Kitazono50, Steven J Kittner67,94, Takahiro Konuma6, Amit Kumar24, Paul Lacaze95, Lenore J Launer96, Keon-Joo Lee97, Kaido Lepik4,98,99,100, Jiang Li35, Liming Li101, Ani Manichaikul44, Hugh S Markus102, Nicholas A Marston8,9, Thomas Meitinger103,104, Braxton D Mitchell105,106, Felipe A Montellano107,108, Takayuki Morisaki10, Thomas H Mosley109, Mike A Nalls41,42,43, Børge G Nordestgaard110,111, Martin J O'Donnell112, Yukinori Okada6,113,114,115,116,117, N Charlotte Onland-Moret75, Bruce Ovbiagele118, Annette Peters119,120,121, Bruce M Psaty56,122,123, Stephen S Rich44, Jonathan Rosand12,13,124, Marc S Sabatine8,9, Ralph L Sacco125,126, Danish Saleheen127, Else Charlotte Sandset128,129, Veikko Salomaa80, Muralidharan Sargurupremraj130, Makoto Sasaki3, Claudia L Satizabal130,131, Carsten O Schmidt132, Atsushi Shimizu3, Nicholas L Smith122,133,134, Kelly L Sloane135, Yoichi Sutoh3, Yan V Sun136,137, Kozo Tanno3, Steffen Tiedt2, Turgut Tatlisumak138, Nuria P Torres-Aguila37, Hemant K Tiwari22, David-Alexandre Trégouët1, Stella Trompet139,140, Anil Man Tuladhar88, Anne Tybjærg-Hansen34,111, Marion van Vugt141, Riina Vibo142, Shefali S Verma143, Kerri L Wiggins56, Patrik Wennberg144, Daniel Woo83, Peter W F Wilson136,145, Huichun Xu105, Qiong Yang131,146, Kyungheon Yoon147, Iona Y Millwood18,63, Christian Gieger148, Toshiharu Ninomiya78, Hans J Grabe149,150, J Wouter Jukema140,151,152, Ina L Rissanen75, Daniel Strbian27, Young Jin Kim147, Pei-Hsin Chen15, Ernst Mayerhofer12,13, Joanna M M Howson46,47, Marguerite R Irvin54, Hieab Adams153,154, Sylvia Wassertheil-Smoller155, Kaare Christensen39,40,156, Mohammad A Ikram30, Tatjana Rundek125,126, Bradford B Worrall157,158, G Mark Lathrop159, Moeen Riaz95, Eleanor M Simonsick160, Janika Kõrv142, Paulo H C França74, Ramin Zand161,162, Kameshwar Prasad24, Ruth Frikke-Schmidt34,111, Frank-Erik de Leeuw88, Thomas Liman71,75,163, Karl Georg Haeusler108, Ynte M Ruigrok55, Peter Ulrich Heuschmann107,164,165, W T Longstreth122,166, Keum Ji Jung18,167, Lisa Bastarache48, Guillaume Paré25,26,168,169, Scott M Damrauer170,171, Daniel I Chasman61,62, Jerome I Rotter172, Christopher D Anderson12,13,124,173, John-Anker Zwart19,20,59, Teemu J Niiranen16,17,174, Myriam Fornage175,176, Yung-Po Liaw15,177, Sudha Seshadri130,131,178, Israel Fernández-Cadenas37, Robin G Walters18,63, Christian T Ruff8,9, Mayowa O Owolabi28,179, Jennifer E Huffman7, Lili Milani4, Yoichiro Kamatani11, Martin Dichgans180,181,182, Stephanie Debette183,184.   

Abstract

Previous genome-wide association studies (GWASs) of stroke - the second leading cause of death worldwide - were conducted predominantly in populations of European ancestry1,2. Here, in cross-ancestry GWAS meta-analyses of 110,182 patients who have had a stroke (five ancestries, 33% non-European) and 1,503,898 control individuals, we identify association signals for stroke and its subtypes at 89 (61 new) independent loci: 60 in primary inverse-variance-weighted analyses and 29 in secondary meta-regression and multitrait analyses. On the basis of internal cross-ancestry validation and an independent follow-up in 89,084 additional cases of stroke (30% non-European) and 1,013,843 control individuals, 87% of the primary stroke risk loci and 60% of the secondary stroke risk loci were replicated (P < 0.05). Effect sizes were highly correlated across ancestries. Cross-ancestry fine-mapping, in silico mutagenesis analysis3, and transcriptome-wide and proteome-wide association analyses revealed putative causal genes (such as SH3PXD2A and FURIN) and variants (such as at GRK5 and NOS3). Using a three-pronged approach4, we provide genetic evidence for putative drug effects, highlighting F11, KLKB1, PROC, GP1BA, LAMC2 and VCAM1 as possible targets, with drugs already under investigation for stroke for F11 and PROC. A polygenic score integrating cross-ancestry and ancestry-specific stroke GWASs with vascular-risk factor GWASs (integrative polygenic scores) strongly predicted ischaemic stroke in populations of European, East Asian and African ancestry5. Stroke genetic risk scores were predictive of ischaemic stroke independent of clinical risk factors in 52,600 clinical-trial participants with cardiometabolic disease. Our results provide insights to inform biology, reveal potential drug targets and derive genetic risk prediction tools across ancestries.
© 2022. The Author(s).

Entities:  

Year:  2022        PMID: 36180795      PMCID: PMC9524349          DOI: 10.1038/s41586-022-05165-3

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   69.504


  102 in total

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Authors:  Benjamin A T Rodriguez; Arunoday Bhan; Andrew Beswick; Peter C Elwood; Teemu J Niiranen; Veikko Salomaa; David-Alexandre Trégouët; Pierre-Emmanuel Morange; Mete Civelek; Yoav Ben-Shlomo; Thorsten Schlaeger; Ming-Huei Chen; Andrew D Johnson
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3.  A Novel Approach for Pathway Analysis of GWAS Data Highlights Role of BMP Signaling and Muscle Cell Differentiation in Colorectal Cancer Susceptibility.

Authors:  Aniket Mishra; Stuart MacGregor
Journal:  Twin Res Hum Genet       Date:  2017-02       Impact factor: 1.587

4.  Conditional and joint multiple-SNP analysis of GWAS summary statistics identifies additional variants influencing complex traits.

Authors:  Jian Yang; Teresa Ferreira; Andrew P Morris; Sarah E Medland; Pamela A F Madden; Andrew C Heath; Nicholas G Martin; Grant W Montgomery; Michael N Weedon; Ruth J Loos; Timothy M Frayling; Mark I McCarthy; Joel N Hirschhorn; Michael E Goddard; Peter M Visscher
Journal:  Nat Genet       Date:  2012-03-18       Impact factor: 38.330

5.  Multiancestry genome-wide association study of 520,000 subjects identifies 32 loci associated with stroke and stroke subtypes.

Authors:  Rainer Malik; Ganesh Chauhan; Matthew Traylor; Muralidharan Sargurupremraj; Yukinori Okada; Kari Stefansson; Bradford B Worrall; Steven J Kittner; Sudha Seshadri; Myriam Fornage; Hugh S Markus; Joanna M M Howson; Yoichiro Kamatani; Stephanie Debette; Martin Dichgans; Aniket Mishra; Loes Rutten-Jacobs; Anne-Katrin Giese; Sander W van der Laan; Solveig Gretarsdottir; Christopher D Anderson; Michael Chong; Hieab H H Adams; Tetsuro Ago; Peter Almgren; Philippe Amouyel; Hakan Ay; Traci M Bartz; Oscar R Benavente; Steve Bevan; Giorgio B Boncoraglio; Robert D Brown; Adam S Butterworth; Caty Carrera; Cara L Carty; Daniel I Chasman; Wei-Min Chen; John W Cole; Adolfo Correa; Ioana Cotlarciuc; Carlos Cruchaga; John Danesh; Paul I W de Bakker; Anita L DeStefano; Marcel den Hoed; Qing Duan; Stefan T Engelter; Guido J Falcone; Rebecca F Gottesman; Raji P Grewal; Vilmundur Gudnason; Stefan Gustafsson; Jeffrey Haessler; Tamara B Harris; Ahamad Hassan; Aki S Havulinna; Susan R Heckbert; Elizabeth G Holliday; George Howard; Fang-Chi Hsu; Hyacinth I Hyacinth; M Arfan Ikram; Erik Ingelsson; Marguerite R Irvin; Xueqiu Jian; Jordi Jiménez-Conde; Julie A Johnson; J Wouter Jukema; Masahiro Kanai; Keith L Keene; Brett M Kissela; Dawn O Kleindorfer; Charles Kooperberg; Michiaki Kubo; Leslie A Lange; Carl D Langefeld; Claudia Langenberg; Lenore J Launer; Jin-Moo Lee; Robin Lemmens; Didier Leys; Cathryn M Lewis; Wei-Yu Lin; Arne G Lindgren; Erik Lorentzen; Patrik K Magnusson; Jane Maguire; Ani Manichaikul; Patrick F McArdle; James F Meschia; Braxton D Mitchell; Thomas H Mosley; Michael A Nalls; Toshiharu Ninomiya; Martin J O'Donnell; Bruce M Psaty; Sara L Pulit; Kristiina Rannikmäe; Alexander P Reiner; Kathryn M Rexrode; Kenneth Rice; Stephen S Rich; Paul M Ridker; Natalia S Rost; Peter M Rothwell; Jerome I Rotter; Tatjana Rundek; Ralph L Sacco; Saori Sakaue; Michele M Sale; Veikko Salomaa; Bishwa R Sapkota; Reinhold Schmidt; Carsten O Schmidt; Ulf Schminke; Pankaj Sharma; Agnieszka Slowik; Cathie L M Sudlow; Christian Tanislav; Turgut Tatlisumak; Kent D Taylor; Vincent N S Thijs; Gudmar Thorleifsson; Unnur Thorsteinsdottir; Steffen Tiedt; Stella Trompet; Christophe Tzourio; Cornelia M van Duijn; Matthew Walters; Nicholas J Wareham; Sylvia Wassertheil-Smoller; James G Wilson; Kerri L Wiggins; Qiong Yang; Salim Yusuf; Joshua C Bis; Tomi Pastinen; Arno Ruusalepp; Eric E Schadt; Simon Koplev; Johan L M Björkegren; Veronica Codoni; Mete Civelek; Nicholas L Smith; David A Trégouët; Ingrid E Christophersen; Carolina Roselli; Steven A Lubitz; Patrick T Ellinor; E Shyong Tai; Jaspal S Kooner; Norihiro Kato; Jiang He; Pim van der Harst; Paul Elliott; John C Chambers; Fumihiko Takeuchi; Andrew D Johnson; Dharambir K Sanghera; Olle Melander; Christina Jern; Daniel Strbian; Israel Fernandez-Cadenas; W T Longstreth; Arndt Rolfs; Jun Hata; Daniel Woo; Jonathan Rosand; Guillaume Pare; Jemma C Hopewell; Danish Saleheen
Journal:  Nat Genet       Date:  2018-03-12       Impact factor: 38.330

6.  MAGMA: generalized gene-set analysis of GWAS data.

Authors:  Christiaan A de Leeuw; Joris M Mooij; Tom Heskes; Danielle Posthuma
Journal:  PLoS Comput Biol       Date:  2015-04-17       Impact factor: 4.475

7.  Trans-ethnic meta-regression of genome-wide association studies accounting for ancestry increases power for discovery and improves fine-mapping resolution.

Authors:  Reedik Mägi; Momoko Horikoshi; Tamar Sofer; Anubha Mahajan; Hidetoshi Kitajima; Nora Franceschini; Mark I McCarthy; Andrew P Morris
Journal:  Hum Mol Genet       Date:  2017-09-15       Impact factor: 6.150

8.  Multi-trait analysis of genome-wide association summary statistics using MTAG.

Authors:  Patrick Turley; Raymond K Walters; Omeed Maghzian; Aysu Okbay; James J Lee; Mark Alan Fontana; Tuan Anh Nguyen-Viet; Robbee Wedow; Meghan Zacher; Nicholas A Furlotte; Patrik Magnusson; Sven Oskarsson; Magnus Johannesson; Peter M Visscher; David Laibson; David Cesarini; Benjamin M Neale; Daniel J Benjamin
Journal:  Nat Genet       Date:  2018-01-01       Impact factor: 38.330

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Authors:  Ayush Giri; Jacklyn N Hellwege; Jacob M Keaton; Jihwan Park; Chengxiang Qiu; Helen R Warren; Eric S Torstenson; Csaba P Kovesdy; Yan V Sun; Otis D Wilson; Cassianne Robinson-Cohen; Christianne L Roumie; Cecilia P Chung; Kelly A Birdwell; Scott M Damrauer; Scott L DuVall; Derek Klarin; Kelly Cho; Yu Wang; Evangelos Evangelou; Claudia P Cabrera; Louise V Wain; Rojesh Shrestha; Brian S Mautz; Elvis A Akwo; Muralidharan Sargurupremraj; Stéphanie Debette; Michael Boehnke; Laura J Scott; Jian'an Luan; Jing-Hua Zhao; Sara M Willems; Sébastien Thériault; Nabi Shah; Christopher Oldmeadow; Peter Almgren; Ruifang Li-Gao; Niek Verweij; Thibaud S Boutin; Massimo Mangino; Ioanna Ntalla; Elena Feofanova; Praveen Surendran; James P Cook; Savita Karthikeyan; Najim Lahrouchi; Chunyu Liu; Nuno Sepúlveda; Tom G Richardson; Aldi Kraja; Philippe Amouyel; Martin Farrall; Neil R Poulter; Markku Laakso; Eleftheria Zeggini; Peter Sever; Robert A Scott; Claudia Langenberg; Nicholas J Wareham; David Conen; Colin Neil Alexander Palmer; John Attia; Daniel I Chasman; Paul M Ridker; Olle Melander; Dennis Owen Mook-Kanamori; Pim van der Harst; Francesco Cucca; David Schlessinger; Caroline Hayward; Tim D Spector; Marjo-Riitta Jarvelin; Branwen J Hennig; Nicholas J Timpson; Wei-Qi Wei; Joshua C Smith; Yaomin Xu; Michael E Matheny; Edward E Siew; Cecilia Lindgren; Karl-Heinz Herzig; George Dedoussis; Joshua C Denny; Bruce M Psaty; Joanna M M Howson; Patricia B Munroe; Christopher Newton-Cheh; Mark J Caulfield; Paul Elliott; J Michael Gaziano; John Concato; Peter W F Wilson; Philip S Tsao; Digna R Velez Edwards; Katalin Susztak; Christopher J O'Donnell; Adriana M Hung; Todd L Edwards
Journal:  Nat Genet       Date:  2018-12-21       Impact factor: 38.330

10.  Genomic risk score offers predictive performance comparable to clinical risk factors for ischaemic stroke.

Authors:  Gad Abraham; Rainer Malik; Ekaterina Yonova-Doing; Agus Salim; Tingting Wang; John Danesh; Adam S Butterworth; Joanna M M Howson; Michael Inouye; Martin Dichgans
Journal:  Nat Commun       Date:  2019-12-20       Impact factor: 14.919

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