Literature DB >> 34850941

Database resources of the national center for biotechnology information.

Eric W Sayers1, Evan E Bolton1, J Rodney Brister1, Kathi Canese1, Jessica Chan1, Donald C Comeau1, Ryan Connor1, Kathryn Funk1, Chris Kelly1, Sunghwan Kim1, Tom Madej1, Aron Marchler-Bauer1, Christopher Lanczycki1, Stacy Lathrop1, Zhiyong Lu1, Francoise Thibaud-Nissen1, Terence Murphy1, Lon Phan1, Yuri Skripchenko1, Tony Tse1, Jiyao Wang1, Rebecca Williams1, Barton W Trawick1, Kim D Pruitt1, Stephen T Sherry1.   

Abstract

The National Center for Biotechnology Information (NCBI) produces a variety of online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals. NCBI provides search and retrieval operations for most of these data from 35 distinct databases. The E-utilities serve as the programming interface for the most of these databases. Resources receiving significant updates in the past year include PubMed, PMC, Bookshelf, RefSeq, SRA, Virus, dbSNP, dbVar, ClinicalTrials.gov, MMDB, iCn3D and PubChem. These resources can be accessed through the NCBI home page at https://www.ncbi.nlm.nih.gov. Published by Oxford University Press on behalf of Nucleic Acids Research 2021.

Entities:  

Mesh:

Year:  2022        PMID: 34850941      PMCID: PMC8728269          DOI: 10.1093/nar/gkab1112

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   19.160


  24 in total

1.  Extending the accuracy limits of prediction for side-chain conformations.

Authors:  Z Xiang; B Honig
Journal:  J Mol Biol       Date:  2001-08-10       Impact factor: 5.469

2.  Entrez: molecular biology database and retrieval system.

Authors:  G D Schuler; J A Epstein; H Ohkawa; J A Kans
Journal:  Methods Enzymol       Date:  1996       Impact factor: 1.600

3.  RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.

Authors:  Wenjun Li; Kathleen R O'Neill; Daniel H Haft; Michael DiCuccio; Vyacheslav Chetvernin; Azat Badretdin; George Coulouris; Farideh Chitsaz; Myra K Derbyshire; A Scott Durkin; Noreen R Gonzales; Marc Gwadz; Christopher J Lanczycki; James S Song; Narmada Thanki; Jiyao Wang; Roxanne A Yamashita; Mingzhang Yang; Chanjuan Zheng; Aron Marchler-Bauer; Françoise Thibaud-Nissen
Journal:  Nucleic Acids Res       Date:  2020-12-03       Impact factor: 16.971

4.  Keep up with the latest coronavirus research.

Authors:  Qingyu Chen; Alexis Allot; Zhiyong Lu
Journal:  Nature       Date:  2020-03       Impact factor: 49.962

5.  Database resources of the National Center for Biotechnology Information.

Authors:  Eric W Sayers; Jeffrey Beck; Evan E Bolton; Devon Bourexis; James R Brister; Kathi Canese; Donald C Comeau; Kathryn Funk; Sunghwan Kim; William Klimke; Aron Marchler-Bauer; Melissa Landrum; Stacy Lathrop; Zhiyong Lu; Thomas L Madden; Nuala O'Leary; Lon Phan; Sanjida H Rangwala; Valerie A Schneider; Yuri Skripchenko; Jiyao Wang; Jian Ye; Barton W Trawick; Kim D Pruitt; Stephen T Sherry
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

6.  VIGOR extended to annotate genomes for additional 12 different viruses.

Authors:  Shiliang Wang; Jaideep P Sundaram; Timothy B Stockwell
Journal:  Nucleic Acids Res       Date:  2012-06-04       Impact factor: 16.971

7.  Best Match: New relevance search for PubMed.

Authors:  Nicolas Fiorini; Kathi Canese; Grisha Starchenko; Evgeny Kireev; Won Kim; Vadim Miller; Maxim Osipov; Michael Kholodov; Rafis Ismagilov; Sunil Mohan; James Ostell; Zhiyong Lu
Journal:  PLoS Biol       Date:  2018-08-28       Impact factor: 8.029

8.  LitCovid: an open database of COVID-19 literature.

Authors:  Qingyu Chen; Alexis Allot; Zhiyong Lu
Journal:  Nucleic Acids Res       Date:  2020-11-09       Impact factor: 16.971

9.  DDBJ update: streamlining submission and access of human data.

Authors:  Asami Fukuda; Yuichi Kodama; Jun Mashima; Takatomo Fujisawa; Osamu Ogasawara
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

10.  PubChem in 2021: new data content and improved web interfaces.

Authors:  Sunghwan Kim; Jie Chen; Tiejun Cheng; Asta Gindulyte; Jia He; Siqian He; Qingliang Li; Benjamin A Shoemaker; Paul A Thiessen; Bo Yu; Leonid Zaslavsky; Jian Zhang; Evan E Bolton
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

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  52 in total

1.  The Sequence Read Archive: a decade more of explosive growth.

Authors:  Kenneth Katz; Oleg Shutov; Richard Lapoint; Michael Kimelman; J Rodney Brister; Christopher O'Sullivan
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

2.  GenBank as a Source to Monitor and Analyze Host-Microbiome Data.

Authors:  Vivek Ramanan; Shanti Mechery; Indra Neil Sarkar
Journal:  Bioinformatics       Date:  2022-07-08       Impact factor: 6.931

3.  Methylation-Independent Chemotaxis Systems Are the Norm for Gastric-Colonizing Helicobacter Species.

Authors:  Xiaolin Liu; Karen M Ottemann
Journal:  J Bacteriol       Date:  2022-08-16       Impact factor: 3.476

4.  Association between cancer genes and germ layer specificity.

Authors:  Hwayeong Lee; Sungwhan Lee; Woo Jong Cho; Minjung Shin; Leeyoung Park
Journal:  Med Oncol       Date:  2022-09-29       Impact factor: 3.738

5.  Pipeline for developing polymorphic microsatellites in species without reference genomes.

Authors:  Kai Liu; Nan Xie
Journal:  3 Biotech       Date:  2022-08-26       Impact factor: 2.893

6.  The Arabidopsis SAC9 enzyme is enriched in a cortical population of early endosomes and restricts PI(4,5)P2 at the plasma membrane.

Authors:  Alexis Lebecq; Mehdi Doumane; Aurelie Fangain; Vincent Bayle; Jia Xuan Leong; Frédérique Rozier; Maria Del Marques-Bueno; Laia Armengot; Romain Boisseau; Mathilde Laetitia Simon; Mirita Franz-Wachtel; Boris Macek; Suayib Üstün; Yvon Jaillais; Marie-Cécile Caillaud
Journal:  Elife       Date:  2022-08-31       Impact factor: 8.713

7.  HumanMine: advanced data searching, analysis and cross-species comparison.

Authors:  Rachel Lyne; Adrián Bazaga; Daniela Butano; Sergio Contrino; Joshua Heimbach; Fengyuan Hu; Alexis Kalderimis; Mike Lyne; Kevin Reierskog; Radek Stepan; Julie Sullivan; Archie Wise; Yo Yehudi; Gos Micklem
Journal:  Database (Oxford)       Date:  2022-07-12       Impact factor: 4.462

Review 8.  Targeted Large-Scale Genome Mining and Candidate Prioritization for Natural Product Discovery.

Authors:  Jessie James Limlingan Malit; Hiu Yu Cherie Leung; Pei-Yuan Qian
Journal:  Mar Drugs       Date:  2022-06-16       Impact factor: 6.085

9.  PhenGenVar: A User-Friendly Genetic Variant Detection and Visualization Tool for Precision Medicine.

Authors:  JaeMoon Shin; Junbeom Jeon; Dawoon Jung; Kiyong Kim; Yun Joong Kim; Dong-Hoon Jeong; JeeHee Yoon
Journal:  J Pers Med       Date:  2022-06-12

10.  Volatile Organic Compounds Frequently Identified after Hyperbaric Hyperoxic Exposure: The VAPOR Library.

Authors:  Feiko J M de Jong; Paul Brinkman; Thijs T Wingelaar; Pieter-Jan A M van Ooij; Rob A van Hulst
Journal:  Metabolites       Date:  2022-05-23
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