| Literature DB >> 34843505 |
Rainer Thell1,2, Verena Kallab1,2, Wolfgang Weinhappel3, Wolfgang Mueckstein3, Lukas Heschl4, Martina Heschl4, Stefan Korsatko5, Franz Toedling6, Amelie Blaschke1,2, Theresa Herzog1,2, Anna Klicpera1,2, Clara Koeller7,8, Moritz Haugk1,7, Anna Kreil1,9, Alexander Spiel1,10, Philipp Kreuzer11, Robert Krause12, Christian Sebesta1,2, Stefan Winkler13, Brenda Laky14,15, Marton Szell1,2.
Abstract
BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causing coronavirus disease 2019 (COVID-19) is currently finally determined in laboratory settings by real-time reverse-transcription polymerase-chain-reaction (rt-PCR). However, simple testing with immediately available results are crucial to gain control over COVID-19. The aim was to evaluate such a point-of-care antigen rapid test (AG-rt) device in its performance compared to laboratory-based rt-PCR testing in COVID-19 suspected, symptomatic patients.Entities:
Mesh:
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Year: 2021 PMID: 34843505 PMCID: PMC8629250 DOI: 10.1371/journal.pone.0259527
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Comparison of demographic characteristics between emergency departments (ED) and primary healthcare centres (PHC).
| Characteristic | ED (N = 296) | PHC (N = 245) | |
|---|---|---|---|
| Male–n / total N (%) | 151 (51.0) | 88 (35.9) | <0.001 |
| Age—median years (min-max) | 58 (19–95) | 37 (18–77) | <0.001 |
| age groups–n (%) | |||
| 18–29 years | 37 (12.5) | 66 (26.9) | <0.001 |
| 30–39 years | 28 (9.5) | 71 (29.0) | |
| 40–49 years | 36 (12.2) | 53 (21.6) | |
| 50–59 years | 53 (17.9) | 28 (11.4) | |
| 60–69 years | 43 (14.5) | 18 (7.3) | |
| 70–79 years | 58 (19.6) | 9 (3.7) | |
| 80–89 years | 36 (12.2) | 0 | |
| ≥90 years | 5 (1.7) | 0 | |
| Symptoms–median n (min-max) | 2 (1–5) | 1 (1–4) | <0.001 |
| fever–n (%) | 198 (66.9) | 65 (26.5) | <0.001 |
| cough–n (%) | 156 (52.7) | 108 (44.1) | 0.046 |
| sore throat–n (%) | 56 (18.9) | 150 (61.2) | <0.001 |
| dysgeusia/anosmia–n (%) | 42 (14.2) | 28 (11.4) | 0.341 |
| dyspnoea–n (%) | 125 (42.2) | 15 (6.1) | <0.001 |
| rhinitis–n (%) | 1 (0.3) | 0 | - |
| diarrhoea–n (%) | 2 (0.7) | 0 | - |
| others–n (%) | 7 (2.4) | 2 (0.8) | - |
Abbreviation: n and N, number; others including nausea, vomiting, fatigue, myalgia, and cephalea.
* Chi-square test;
† Mann-Whitney U-test;
‡ Fischer’s exact test.
Fig 1Overall testing outcome.
Diagnostic performance of the antigen rapid test (AG-rt) at emergency departments (ED) and primary healthcare centres (PHC).
| ED (n = 296) | PHC (n = 245) | |
|---|---|---|
|
| 106 (35.8) | 65 (26.5) |
|
| 3 (1.0) | 0 |
|
| 30 (10.1) | 12 (4.9) |
|
| 157 (53.1) | 168 (68.6) |
|
| 46.0 [40.2–51.8] | 31.4 [25.7–37.7] |
|
| 88.9 [84.7–92.2] | 95.1 [91.6–97.4] |
|
| 77.9 [70.0–84.6] | 84.4 [74.4–91.7] |
|
| 98.1 [94.6–99.6] | 100 [97.8–100.0] |
|
| 97.3 [92.0–99.1] | 100 |
|
| 84.0 [79.2–87.8] | 93.3 [89.3–95.9] |
|
| 41.6 [13.5–128.0] | - |
|
| 0.22 [0.16–0.31] | 0.16 [0.09–0.26] |
Abbreviation: CI, confidence interval; ED, emergency departments; LR, likelihood ratio; n, numbers; NPV, negative predictive value; PHC, primary health care centres; PPV, positive predictive value.
Fig 2Sensitivities (in % with 95% confidence interval in parenthesis) between ED and PHC regarding days of symptom onset.
Diagnostic performance of the antigen rapid test (AG-rt) according symptom(s) onset.
| AG-rt (n = 541) | Onset within 3 days (n = 393) | Onset 4–7 days (n = 98) | Onset 8–14 days (n = 50) |
|---|---|---|---|
|
| 116 (29.5) | 40 (40.8) | 15 (30.0) |
|
| 1 (0.3) | 2 (2.0) | 0 |
|
| 24 (6.1) | 9 (9.2) | 9 (18.0) |
|
| 252 (64.1) | 47 (48.0) | 26 (52.0) |
|
| 35.6 [30.9–40.6] | 50.0 [39.7–60.3] | 48.0 [33.7–62.6] |
|
| 93.6 [90.8–95.8] | 88.8 [80.8–94.3] | 82.0 [68.6–91.4] |
|
| 82.9 [75.6–88.7] | 81.6 [68.0–91.2] | 62.5 [40.6–81.2] |
|
| 99.6 [97.8–100.0] | 95.9 [86.0–99.5] | 100.0 [86.8–100.0] |
|
| 99.2 [94.3–99.9] | 95.2 [83.6–98.7] | 100 |
|
| 91.3 [87.9–93.8] | 83.9 [74.3–90.4] | 74.3 [63.3–82.9] |
|
| 209.6 [29.6–1484.6] | 20.0 [5.1–78.2] | - |
|
| 0.17 [0.12–0.25] | 0.19 [0.11–0.35] | 0.38 [0.22–0.63] |
Abbreviation: AG-rt, antigen rapid test; CI, confidence interval; LR, likelihood ratio; n, numbers; NPV, negative predictive value; PPV, positive predictive value.
Fig 3Sensitivities (in % with 95% confidence interval in parenthesis) between ED and PHC regarding rt-PCR cut offs.
Diagnostic performance of the antigen rapid test (AG-rt) according to various cut-offs.
| AG-rt (n = 532 | rt-PCR | rt-PCR Ct30 | rt-PCR Ct25 | rt-PCR Ct20 |
|---|---|---|---|---|
|
| ||||
|
| Ct = 1–39 | Ct ≤ 30 | Ct ≤ 25 | Ct ≤ 20 |
|
| Ct > 40 | Ct > 30 | Ct > 25 | Ct > 20 |
|
| 165 (31.0) | 160 (30.1) | 123 (23.1) | 51 (9.6) |
|
| 3 (0.6) | 8 (1.5) | 45 (8.5) | 117 (22.0) |
|
| 37 (7.0) | 13 (2.4) | 2 (0.4) | 0 |
|
| 327 (61.4) | 351 (66.0) | 362 (68.0) | 364 (68.4) |
|
| 38.0 [33.8–42.3] | 32.5 [28.6–36.7] | 23.5 [20.0–27.3] | 9.6 [7.2–12.4] |
|
| 92.5 [89.9–94.6] | 96.1 [94.0–97.5] | 91.2 [88.4–93.4] | 78.0 [74.2–81.5] |
|
| 81.7 [75.7–86.8] | 92.5 [87.5–95.9] | 98.4 [94.3–99.8] | 100 [93.0–100.0] |
|
| 99.1 [97.4–99.8] | 97.8 [95.7–99.0] | 88.9 [85.5–91.8] | 75.7 [71.6–79.5] |
|
| 98.2 [94.7–99.4] | 95.2 [91.0–97.6] | 73.2 [67.5–78.3] | 30.4 [27.1–33.8] |
|
| 89.8 [86.9–92.2] | 96.4 [94.1–97.9] | 99.5 [97.9–99.9] | 100 |
|
| 89.9 [29.1–277.7] | 41.5 [20.9–82.5] | 8.9 [6.8–11.7] | 4.1 [3.5–4.8] |
|
| 0.18 [0.14–0.25] | 0.08 [0.05–0.13] | 0.02 [0.00–0.07] | 0 |
Abbreviation: AG-rt, antigen rapid test; CI, confidence interval; Ct, cycle threshold; LR, likelihood ratio; n, numbers; NPV, negative predictive value; PPV, positive predictive value; rt-PCR, reverse transcription polymerase chain reaction.
* No Ct was available in 11 samples.
Fig 4Boxplot showing cycle threshold (Ct) values of true positive (n = 165) and false negative (n = 37).