Literature DB >> 34837713

Long non-coding RNA MIR31HG as a prognostic predictor for malignant cancers: A meta- and bioinformatics analysis.

Yuanfeng Wei1,2,3, Yingjie Zhai1,2, Xiaoang Liu4, Shan Jin1,2, Lu Zhang1,2, Chengyan Wang1,2, Hong Zou1,2, Jianming Hu1,2, Lianghai Wang1,2, Jinfang Jiang1,2, Xihua Shen1,2, Lijuan Pang1,2.   

Abstract

BACKGROUND: The possible regulatory mechanism of MIR31HG in human cancers remains unclear, and reported results of the prognostic significance of MIR31HG expression are inconsistent.
METHODS: The meta-analysis and related bioinformatics analysis were conducted to evaluate the role of MIR31HG in tumor progression.
RESULTS: The result showed that high MIR31HG expression was not related to prognosis. However, in the stratified analysis, we found that the overexpression of MIR31HG resulted in worse OS, advanced TNM stage, and tumor differentiation in respiratory system cancers. Moreover, our results also found that MIR31HG overexpression was related to shorter OS in cervical cancer patients and head and neck tumors. In contrast, the MIR31HG was lower in digestive system tumors which contributed to shorter overall survival, advanced TNM stage, and distant metastasis. Furthermore, the bioinformatics analysis showed that MIR31HG was highly expressed in normal urinary bladder, small intestine, esophagus, stomach, and duodenum and low in colon, lung, and ovary. The results obtained from FireBrowse indicated that MIR31HG was highly expressed in LUSC, CESC, HNSC, and LUAD and low in STAD and BLCA. Gene Ontology analysis showed that the co-expressed genes of MIR31HG were most enriched in the biological processes of peptide metabolism and KEGG pathways were most enriched in Ras, Rap1, and PI3K-Akt signaling pathway.
CONCLUSION: MIR31HG may serve as a potential biomarker in human cancers.
© 2021 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC.

Entities:  

Keywords:  MIR31HG; bioinformatics analysis; cancer; meta-analysis; prognostic biomarker

Mesh:

Substances:

Year:  2021        PMID: 34837713      PMCID: PMC8761471          DOI: 10.1002/jcla.24082

Source DB:  PubMed          Journal:  J Clin Lab Anal        ISSN: 0887-8013            Impact factor:   2.352


INTRODUCTION

Cancer has become one of the main public health problems, which served as the leading cause of morbidity and mortality in globally. According to Global Cancer Statistics 2018, it was predicted that there were 18.1 million new cancer cases and 9.6 million cancer deaths. Although radiotherapy, surgery, chemotherapy, immune therapy, and the application of molecular‐targeted drugs provide various means for treatment of cancer. However, the overall survival (OS) rate is still not optimistic for most types of cancer, and the majority of patients with cancer have a poor prognosis. Therefore, it is urgent and critically important to find novel prognostic biomarkers to provide useful therapeutic strategies for cancers. Long non‐coding RNAs, without protein coding ability and the length >200 nucleotides, play crucial roles in various biological processes, including protein function, post‐transcriptional mRNA processing, chromatin modification, modulating gene expression, and controlling gene transcription. , MIR31HG, which was previously known as LncHIFCAR or LOC554202, acts as a host gene for miR‐31. Recently, MIR31HG attracted increasing interest because of its aberrant expression in a series of human cancers. Chen et al discovered that Loc554202 was up‐regulated in cervical cancer (CC) tissues and the overexpression of Loc554202 predicted a shorter OS. In addition, up‐regulated MIR31HG expression was observed in NSCLC, oral squamous cell carcinoma (OSCC), laryngeal squamous cell cancer (LSCC), breast cancer (BC), pancreatic ductal adenocarcinoma (PDAC), and esophageal squamous cell carcinoma (ESCC), leading to short survival time and poor clinicopathologic features. In contrast, some articles demonstrated that low MIR31HG expression was associated with reduced survival rates in gastric cancer (GC), ESCC, hepatocellular carcinoma (HCC), and colorectal cancer (CRC). Accumulating evidence indicated that MIR31HG might be a potential biomarker to predict the prognosis of tumors. However, the reported results of prognostic significance of MIR31HG in cancers are controversial. Therefore, this meta‐analysis was performed to explore the prognostic value of lncRNA MIR31HG expression in tumors. Moreover, the related bioinformatics analysis was applied to further explore the possible regulatory mechanisms of MIR31HG in tumor progression.

MATERIALS AND METHODS

Search strategy

A literature search was conducted on four electronic databases, including PubMed, EMBASE, Web of Science, and Cochrane Library (up to July 25, 2019). The searched terms were (“MIR31HG” or “LOC554202” or “the host gene of miR‐31” or “the MIR31 host gene” or “microRNA‐31 host gene” or “LncRNA HIFCAR”) and (“Tumor” or “cancer”).

Inclusion and exclusion criteria

The inclusion criteria were as follows: (1) articles explored the association between MIR31HG and cancer prognosis, (2) the hazard ratios (HRs) for the OS could be extracted and calculated through the K‐M curves or directly provided in the article, (3) reported the correlation of MIR31HG expression and clinicopathological features, (4) high and low MIR31HG expression in patients, and (5) full‐text was available. Exclusion criteria were as follows: (1) comments, reviews, and case reports; (2) cell or animal experiments; (3) sample <20 cases; (4) the data were obtained from TCGA database or other database without qRT‐PCR validation; and (5) insufficient data.

Quality assessment

The quality of included studies was assessed by The Newcastle–Ottawa Scale (NOS) criteria. This important process was independently operated by two authors. A consensus was reached by a third author when they had any disagreements. The high‐quality article is one with NOS ≥6 scores.

Data extraction

Two authors independently screened each included article and extracted the essential information, which are summarized in Table 1. When univariate and multivariate analyses were provided in the study, the data were extracted from multivariate analysis. Engauge Digitizer 4.1 (http://digitizer.sourceforge.net/) was used to extracted HR and 95% CI from survival curves.
TABLE 1

Main characteristics of the selected studies

AuthorYearCountryTumor typeCases/ControlsDetection methodsInternal controlCutoff valueOutcome

HR (95% CI)

High/Low

NOS
Chen J2017ChinaCC120/120qRT‐PCRGAPDHMedianOS2.875 (1.539–3.536)7
Ding J2015ChinaCRC48/48qRT‐PCRGAPDHMedianNANA6
Dandan W2019ChinaNSCLC50/50qRT‐PCRGAPDHMedianOS2.398 (1.292–3.205)7
He A2016ChinaBC55/55qRT‐PCRGAPDHMedianNANA6
Nie FQ2015ChinaGC42/42qRT‐PCRGAPDHMedianOS0.411 (0.236–0.716)7
Qin J2018ChinaLUAD132/20qRT‐PCRGAPDHMedianOS1.734(1.043–2.882)6
Ren ZP2017ChinaESCC185/185qRT‐PCRGAPDHMedianOS0.448 (0.256–0.894)7
Shih JW2017Taiwan, ChinaOSCC42/42qRT‐PCRGAPDHFold changesOS2.239 (0.719–6.966)6
Sui J2018ChinaLUAD43/43qRT‐PCRGAPDHFold changesOS1.665 (1.129–2.454)6
Wang R2018ChinaLSCC60/60qRT‐PCR18s rRNAMedianOS4.170 (1.069–16.268)7
Yan S2018ChinaHCC42/42qRT‐PCRGAPDHMedianNA0.396 (0.228–0.688)7
Yang L2016ChinaCRC178/178qRT‐PCRβ‐actinMedianOS0.408 (0.129–0.747)8
Zheng S2019ChinaNSCLC88/88qRT‐PCRGAPDHMedianOS2.147 (1.235–3.733)7

Abbreviations: BC, bladder cancer; CC, cervical cancer; CI, confidence interval; CRC, colorectal cancer; ESCC, esophageal squamous cell carcinoma; GC, gastric cancer; HCC, hepatocellular carcinoma; HR, hazard ratio; LSCC, laryngeal squamous cell cancer; LUAD, lung adenocarcinoma; NA, not available; NSCLC, non‐small‐cell lung cancer; OS, overall survival; OSCC, oral squamous cell carcinoma.

Main characteristics of the selected studies HR (95% CI) High/Low Abbreviations: BC, bladder cancer; CC, cervical cancer; CI, confidence interval; CRC, colorectal cancer; ESCC, esophageal squamous cell carcinoma; GC, gastric cancer; HCC, hepatocellular carcinoma; HR, hazard ratio; LSCC, laryngeal squamous cell cancer; LUAD, lung adenocarcinoma; NA, not available; NSCLC, non‐small‐cell lung cancer; OS, overall survival; OSCC, oral squamous cell carcinoma.

Statistical analysis

MIR31HG expression and cancer prognosis were estimated by HRs and 95% CIs. Moreover, the correlation between MIR31HG expression and clinical features was conducted by ORs and 95% CIs. The heterogeneity among articles was determined by I 2 value and a p‐value. If I 2 ≤ 50% or p ≥ 0.05, the fixed‐effects model was applied; otherwise, a random‐effects model was used. Publication bias was evaluated by funnel plot. The sensitivity analysis was conducted to evaluate the stability of results. Moreover, p < 0.05 was regarded statistically significant.

Bioinformatics analysis

The National Center for Biotechnology Information (NCBI) Gene integrates information from a wide range of species (https://www.ncbi.nlm.nih.gov/gene/). In our study, we used it to clarify the MIR31HG expression in different normal tissues. MIR31HG expression in carcinoma and adjacent tissues from FireBrowse (http://firebrowse.org/), an interactive web‐based TCGA database. In this study, it was applied to analyze the tumor/normal differential MIR31HG expression. GEPIA (http://gepia.cancer‐pku.cn/) database as a tool to analyze the relevance MIR31HG with OS in TCGA dataset.

Functional analysis of lncRNA MIR31HG

Co‐expressed genes of MIR31HG were identified by the MEM web (http://biit.cs.ut.ee/mem/) in Human Genome U133 Plus 2.0. These co‐expressed genes were ranked according to a score of significance by the MEM tool. The top 100 co‐expressed genes of MIR31HG were selected for the advanced analysis. Subsequently, Gene Ontology (GO) analysis was conducted using the Functional Enrichment Analysis tool (FunRich 3.1.3). Results from KEGG were obtained through KOBAS 3.0 (kobas.cbi.pku.edu.cn/), which is a web used to annotate input genes and identify pathways involved.

RESULTS

Study characteristics

The details about the screening process of MIR31HG are shown in Figure 1. Finally, 13 studies were included in this article. The included studies were involved in nine types of cancer, including NSCLC (n = 2), , lung adenocarcinoma (LUAD, n = 2), , ESCC (n = 1), GC (n = 1), HCC (n = 1), CRC (n = 2), , OSCC (n = 1), LSCC (n = 1), BC (n = 1), CC (n = 1). The detail of the included articles is summarized in Table 1. The studies were of good quality that confirmed by the NOS scoring system.
FIGURE 1

Flow diagram of the study search and selection process in the meta‐analysis

Flow diagram of the study search and selection process in the meta‐analysis

MIR31HG expression and survival

Eleven studies were included for OS. The result showed that the expression of MIR31HG was not associated with prognosis (HR = 1.21, 95% CI: 0.73–2.01, p = 0.45; Figure 2A). However, there is significant heterogeneity among studies (I 2 = 86%); then, a random‐effects model was used. The funnel plot showed no significant evidence of publication bias (Figure 2B).
FIGURE 2

FIGURE Forest plots for the association between MIR31HG and OS (A) of tumors. Funnel plot (B) for publication bias of MIR31HG and OS. Funnel plot showing the relation hazard ratio (HR) and standard error (log HR). Abbreviations: CI, confidence interval; OS, overall survival; SE, standard error

FIGURE Forest plots for the association between MIR31HG and OS (A) of tumors. Funnel plot (B) for publication bias of MIR31HG and OS. Funnel plot showing the relation hazard ratio (HR) and standard error (log HR). Abbreviations: CI, confidence interval; OS, overall survival; SE, standard error Considering the heterogeneity, subgroup meta‐analysis was performed to explore whether type of cancers was the reason. There were four studies that provided an OS for digestive system cancers, four studies for respiratory system cancers, two articles for head and neck tumors, and one for cervical cancer. In the stratified analysis, we found that overexpression MIR31HG had worse OS of the patients with respiratory system cancers (HR = 1.87, 95% CI: 1.46–2.40, p < 0.00001; Figure 3). Moreover, MIR31HG overexpression was also associated with shorter OS in head and neck tumors (HR = 2.89, 95% CI: 1.21–6.91, p = 0.02; Figure 3) and cervical cancer patients (HR = 2.88, 95% CI: 1.54–5.37; p = 0.0009; Figure 3). In contrast, the pooled results revealed that the low MIR31HG expression was significantly related to shorter OS in digestive system tumors (HR = 0.42, 95% CI: 0.31–0.57, p < 0.00001; Figure 3). There was no significant publication bias in different systems of cancers, performed by funnel plot (Figure 4).
FIGURE 3

Forrest plot of the hazard ratio for the association of MIR31HG expression with OS by subgroup analysis

FIGURE 4

Funnel plot for publication bias of MIR31HG and OS. Funnel plot showing the relation hazard ratio (HR) and standard error (log HR) by subgroup analysis

Forrest plot of the hazard ratio for the association of MIR31HG expression with OS by subgroup analysis Funnel plot for publication bias of MIR31HG and OS. Funnel plot showing the relation hazard ratio (HR) and standard error (log HR) by subgroup analysis

MIR31HG expression and clinicopathological characteristics of cancer

In respiratory system cancers, high MIR31HG1 expression was related to tumor differentiation (OR = 4.12, 95% CI: 2.39–7.10, p < 0.00001; Figure 5B) and advanced TNM stage (OR = 6.28, 95% CI: 3.55–11.10, p < 0.00001; Figure 5A). There was no significant association between MIR31HG expression and lymph node metastasis, age, tumor size, or gender, which are summarized in Table 2. In contrast, Table 3 and Figure 6 presents that patient with low expression of MIR31HG was related to advanced TNM stage (OR = 0.32, 95% CI: 0.22–0.47, p < 0.00001; Figure 6A), and distant recurrence (OR = 0.39, 95% CI: 0.21–0.73, p = 0.003; Figure 6B) in digestive system tumors. Subsequently, the publication bias is presented in Figures 7 and 8.
FIGURE 5

Forrest plot of odds ratios for the association of MIR31HG expression with clinicopathological features in lung cancer. (A) TNM stage, (B) tumor differentiation, (C) age, (D) gender, (E) tumor size, (F) lymph node metastases

TABLE 2

Meta‐analysis for the association between lncRNA MIR31HG expression and clinicopathological parameters in respiratory system tumors

Clinicopathological parametersStudies (n)Total casesOR (95% CI) p‐ValueHeterogeneity
I 2(%)PhModel
Age (old vs. young)32500.95 (0.58–1.58)0.8500.46FEM
Gender (man vs. female)32500.86 (0.51–1.42)0.5500.37FEM
Tumor size (larger size vs. small size)32501.22 (0.74–2.00)0.43460.16FEM
TNM stage (III‐IV vs. I‐II)32506.28 (3.55–11.10)<0.0000100.46FEM
Lymph node metastasis (positive vs. negative)21381.62 (0.51–5.08)0.41610.11REM
Differentiation (well or moderately vs. poor)32504.12 (2.39–7.10)<0.0000100.43FEM

Abbreviations: CI, confidence interval; FEM, fixed‐effects model; OR, odds ratio; REM, random‐effects model.

TABLE 3

Meta‐analysis for the association between lncRNA MIR31HG expression and clinicopathological parameters in digestive system tumors

Clinicopathological parametersStudies (n)Total casesOR (95% CI) p‐ValueHeterogeneity
I 2 (%)PhModel
Age (old vs. young)54951.02 (0.72–1.45)0.9100.78FEM
Gender (man vs. female)54950.92 (0.63–1.33)0.6500.83FEM
Tumor size (larger size vs. small size)43100.44 (0.14–1.41)0.17790.002REM
TNM stage (III‐IV vs. I‐II)54950.32 (0.22–0.47)<0.00001210.28FEM
Lymph node metastasis (positive vs. negative)44530.61 (0.32–1.15)0.13520.1REM
Distant metastasis (positive vs. negative)22270.39 (0.21–0.73)0.00300.62FEM
Differentiation (well or moderately vs. poor)44470.61 (0.22–1.67)0.33800.002REM

Abbreviations: CI, confidence interval; FEM, fixed‐effects model; OR, odds ratio; REM, random‐effects model.

FIGURE 6

Forrest plot of odds ratios for the association of MIR31HG expression with clinicopathological features in digestive system tumors. (A) TNM stage, (B) distant metastasis, (C) age, (D) gender, (E) tumor size, (F) tumor differentiation, (G) lymph node metastases

FIGURE 7

Funnel plot for publication bias of MIR31HG and clinicopathological features in lung cancer. (A) TNM stage, (B) tumor differentiation, (C) age, (D) gender, (E) tumor size, and (F) lymph node metastases

FIGURE 8

Funnel plot for publication bias of MIR31HG and clinicopathological features in digestive system tumors. (A), TNM stage (B), distant metastasis (C), age (D), gender (E), tumor size (F), tumor differentiation, (G) lymph node metastases

Forrest plot of odds ratios for the association of MIR31HG expression with clinicopathological features in lung cancer. (A) TNM stage, (B) tumor differentiation, (C) age, (D) gender, (E) tumor size, (F) lymph node metastases Meta‐analysis for the association between lncRNA MIR31HG expression and clinicopathological parameters in respiratory system tumors Abbreviations: CI, confidence interval; FEM, fixed‐effects model; OR, odds ratio; REM, random‐effects model. Meta‐analysis for the association between lncRNA MIR31HG expression and clinicopathological parameters in digestive system tumors Abbreviations: CI, confidence interval; FEM, fixed‐effects model; OR, odds ratio; REM, random‐effects model. Forrest plot of odds ratios for the association of MIR31HG expression with clinicopathological features in digestive system tumors. (A) TNM stage, (B) distant metastasis, (C) age, (D) gender, (E) tumor size, (F) tumor differentiation, (G) lymph node metastases Funnel plot for publication bias of MIR31HG and clinicopathological features in lung cancer. (A) TNM stage, (B) tumor differentiation, (C) age, (D) gender, (E) tumor size, and (F) lymph node metastases Funnel plot for publication bias of MIR31HG and clinicopathological features in digestive system tumors. (A), TNM stage (B), distant metastasis (C), age (D), gender (E), tumor size (F), tumor differentiation, (G) lymph node metastases

Sensitivity analysis

The sensitivity analysis is important for the reliability of the results. Because of the significant heterogeneity in over survival (p < 0.00001, I 2 = 86%), we excluded the article one by one for sensitivity analysis. As presented in Table 4, after removing any single study, the pooled HR was not significantly affected.
TABLE 4

Sensitivity analysis for overall survival

Study omitted (year)OS HR (95% CI) I 2 (%)Statistical method p‐Value
Chen J 20171.11 (0.66–1.87)86Random0.7
Dandan W 20191.13 (0.66–1.93)86Random0.66
Nie FQ 20151.36 (0.83–2.25)84Random0.22
Qin J 20181.17 (0.67–2.05)87Random0.58
Ren ZP 20171.35 (0.81–2.26)84Random0.25
Shih JW 20171.16 (0.68–1.97)87Random0.59
Sui J 20181.17 (0.66–2.10)87Random0.58
Wang R 20181.12 (0.67–1.88)87Random0.67
Yan S 20181.37 (0.84–2.25)83Random0.21
Yang L 20161.32 (0.78–2.22)87Random0.3
Zheng S 20191.14 (0.66–1.97)86Random0.63

Abbreviations: CI, confidence interval; Fixed, fixed‐effects model; HR, hazard ratio; OS, overall survival; Random, random‐effects model.

Sensitivity analysis for overall survival Abbreviations: CI, confidence interval; Fixed, fixed‐effects model; HR, hazard ratio; OS, overall survival; Random, random‐effects model.

Validation of the results by Bioinformatics analysis

To exploring the potential functional impact of MIR31HG expression on cancers, we evaluated its level in different normal tissues from NCBI Gene. The project title is HPA RNA‐seq normal tissues (BioProject: PRJEB4337). As shown in Figure 9, MIR31HG was highly expressed in urinary bladder, small intestine, esophagus, stomach, and duodenum and was low in colon, lung, and ovary. The results obtained from FireBrowse indicated that MIR31HG was highly expressed in some tumor tissues, such as LUSC, CESC, HNSC, and LUAD, and expressed lower in STAD and BLCA (Figure 10). Then, we accessed the relationship of MIR31HG expression with OS in cancers included in TCGA dataset. As shown in Figure 11, based on median expression of MIR31HG, 9,411 patients in all were separated into high or low expression group, patient with the high expression MIR31HG was not associated with prognosis compared to the low expression group, which was consistent with the results of our meta‐ analysis.
FIGURE 9

MIR31HG is widely expressed in human normal tissues

FIGURE 10

MIR31HG expression profile across tumor samples and adjacent normal tissues from FireBrowse (box plot)

FIGURE 11

Survival curves of MIR31HG are plotted for all kinds of cancers from TCGA dataset (n = 9411)

MIR31HG is widely expressed in human normal tissues MIR31HG expression profile across tumor samples and adjacent normal tissues from FireBrowse (box plot) Survival curves of MIR31HG are plotted for all kinds of cancers from TCGA dataset (n = 9411)

Analysis of co‑expressed genes of lncRNA MIR31HG in human tumors

To questing the potential biological functions of MIR31HG, the top 100 co‐expressed genes of MIR31HG were selected, which was shown in Figure 12. Next, we performed the Gene Ontology (GO) and KEGG pathways enrichment analysis based on the top 100 co‐expressed target genes. Gene Ontology terms enrichment analysis showed that the most significantly enriched on biological processes (BP) were peptide metabolism, glycosaminoglycan metabolism, immune cell migration, signal transduction, and cell communication. In addition, cellular components (CC) and molecular functions (MF) are also presented in Figure 13. The results of KEGG analysis revealed that the target genes were enriched in PI3K‐Akt signaling pathway, Rap1 signaling pathway, Ras signaling pathway, and so on (Figure 14). The most significant pathways are summarized in Table 5.
FIGURE 12

The heatmap of top 100 MIR31HG co‐expressed genes in tumor expression chips

FIGURE 13

Gene ontology enrichment analysis for the top 100 co‐expressed genes of MIR31HG. This figure presents a representative, partial list of the significantly enriched GO terms associated with the top 100 co‐expressed genes of MIR31HG in the biological process (A), cellular component (B), and molecular function (C)

FIGURE 14

KEGG analysis for the main signaling pathway. This figure presents a representative, the significantly signaling pathway associated with co‐expressed genes of MIR31HG: Rap1 signaling pathway (A) and PI3K‐Akt signaling pathway (B)

TABLE 5

KEGG pathway enrichment analysis of MIR31HG target genes

Pathway descriptionKEGG IDInput numberBackground number p‐ValueCorrected p‐value
Proteoglycans in cancerhsa0520592057.77E‐117.23E‐09
Focal adhesionhsa0451072035.51E‐082.56E‐06
Rap1 signaling pathwayhsa0401562111.54E‐063.91E‐05
PI3K‐Akt signaling pathwayhsa0415173421.68E‐063.91E‐05
Bacterial invasion of epithelial cellshsa051004781.03E‐050.000191027
Ras signaling pathwayhsa0401452284.08E‐050.000631626
Endocytosishsa0414452607.49E‐050.000950683
Cytokine‐cytokine receptor interactionhsa0406052658.18E‐050.000950683
Complement and coagulation cascadeshsa046103790.0003351520.003345781
EGFR tyrosine kinase inhibitor resistancehsa015213810.0003597610.003345781
Regulation of actin cytoskeletonhsa0481042150.000463190.003916061
Pathways in cancerhsa0520053970.000513630.003980636
Nicotinate and nicotinamide metabolismhsa007602300.0012605170.009017544
Phagosomehsa0414531550.0022347980.014064537
Bladder cancerhsa052192410.0022684740.014064537
Malariahsa051442490.0031762050.017389501
Axon guidancehsa0436031760.0031787260.017389501
Central carbon metabolism in cancerhsa052302670.0057349760.028188599
Epithelial cell signaling in Helicobacter pylori infectionhsa051202680.0058974730.028188599
p53 signaling pathwayhsa041152690.0060620640.028188599
Melanomahsa052182710.0063974990.028331783
Adherens junctionhsa045202740.006916180.029236577
ECM‐receptor interactionhsa045122820.0083890960.033846184
MAPK signaling pathwayhsa0401032550.0087344990.033846184
AGE‐RAGE signaling pathway in diabetic complicationshsa0493321010.0123930720.04595296
HIF‐1 signaling pathwayhsa0406621030.0128545950.04595296
MicroRNAs in cancerhsa0520632990.0133411820.04595296
The heatmap of top 100 MIR31HG co‐expressed genes in tumor expression chips Gene ontology enrichment analysis for the top 100 co‐expressed genes of MIR31HG. This figure presents a representative, partial list of the significantly enriched GO terms associated with the top 100 co‐expressed genes of MIR31HG in the biological process (A), cellular component (B), and molecular function (C) KEGG analysis for the main signaling pathway. This figure presents a representative, the significantly signaling pathway associated with co‐expressed genes of MIR31HG: Rap1 signaling pathway (A) and PI3K‐Akt signaling pathway (B) KEGG pathway enrichment analysis of MIR31HG target genes

DISCUSSION

Emerging evidences have demonstrated that abnormal lncRNA expression was related to human diseases, especially cancer. , Moreover, lncRNAs play crucial roles in gene regulation and thus act as an oncogene or tumor suppressor via both oncogenic and tumor‐suppressive pathways. Some studies reported that lncRNAs were promising to be the new tumor biomarker for prognosis and diagnostic of tumors. , , , , Recently, dysregulation of MIR31HG has been reported in cervical cancer, GC, LSCC, and other types of cancer. The expression levels and prognostic value of MIR31HG in cancers are still controversial and the underlying mechanism remains unclear. In this study, our results found that MIR31HG expression was not associated with prognosis (HR = 1.21, 95% CI: 0.73–2.01, p = 0.45), which was consistent with the results of the TCGA survival data. However, there was significant heterogeneity among studies. Considering the heterogeneity, we choose a random effect model. Sequentially, we conducted subgroup analyses of OS based on the system of cancer. The results indicated that MIR31HG could be a potential prognostic biomarker for respiratory system cancers, head and neck tumors, and digestive system cancers. In respiratory system tumors, MIR31HG overexpression was associated with worse OS of the patients. Additionally, high MIR31HG expression was significantly related to advanced TNM stage and tumor differentiation. On the contrary, the lower MIR31HG expression was significantly associated with shorter OS in digestive system cancers. Moreover, low expression of MIR31HG was associated with advanced TNM stage and distant metastasis. Both results indicated that MIR31HG played an important role in tumor progression and metastasis. To gain insight into the potential functional impact of the MIR31HG expression on cancers, we evaluated the expression of MIR31HG in different normal tissues and some tumor tissues; MIR31HG was highly expressed in normal urinary bladder, small intestine, esophagus, stomach, and duodenum and was low in colon, lung, and ovary normal tissues. In cancer tissues, MIR31HG was highly expressed in LUSC, HNSC, and LUAD and low in BLCA, STAD, and so on. These results were consistent with the results in the literature. , , , For example, Wu et al. revealed that MIR31HG in the NSCLC cell lines and tissues was up‐regulated compared with normal cell line and adjacent normal tissues. Qin et al. also found that MIR31HG was highly expressed in lung adenocarcinoma cell lines and tissues. Chen et al. showed that MIR31HG was lower in adjacent non‐tumor tissues compared with cervical cancer tissues. He et al. discovered that MIR31HG expression was decreased in bladder cancer tissues compared with noncancerous tissues. Nie et al. found that MIR31HG was decreased in GC tissues and related to malignantly pathological stage. Ren et al. revealed that MIR31HG was downregulated in ESCC tissues compared with controls. The above results may explain the reason of the opposite results obtained in digestive and respiratory tumors. Gene ontology and KEGG pathway enrichment analysis found that target genes were mostly enriched in p53, Rap1 signaling pathway, focal adhesion, PI3K‐Akt, MAPK signaling pathway, microRNAs in cancer, and HIF‐1 signaling pathway. Shih et al. found that MIR31HG was a HIF‐1α co‐activator promoting oral cancer progression. Wang et al. observed that MIR31HG may contribute to gefitinib resistance via the EGFR/PI3K/AKT pathway. Dandan et al. revealed that MIR31HG could reverse miR‐214‐induced inhibition of NSCLC progression. Zheng et al. discovered that MIR31HG by activating the Wnt/β‐catenin signaling pathway to promote cell invasion and proliferation in NSCLC. Wang et al. found that MIR31HG could improve the proliferation of head and neck cancer by targets HIF1A and P21. Yan et al. revealed that MIR31HG might reduce the proliferation and metastasis of HCC. Yang et al. found that MIR31HG was negatively regulated by miR‐193b and could promote tumor progression in PDAC. Lin et al. shown that MIR31HG could promote migratory abilities of GC cells through downregulating E‐cadherin and p21. Ma et al. suggested that MIR31HG could modulate chordoma cell invasion by up‐regulation of EZH2 and RNF144B by miR‐31. Our results were in agreement with the previous reports that MIR31HG was involved in tumor progression by regulating various pathways, and further research is necessary to verify the possible mechanisms. Moreover, there were some limitations in our article which should be considered. Firstly, included articles all came from China, which made the results could only represent Chinese patients. Next, we extracted HR and relevant data from the survival curve, which might bring about subtle bias of HR values. Moreover, the cutoff values of our included articles were not all the same. There were 11 articles with cutoff values of median and two articles with fold changes to define the high and low expression of MIR31HG. Finally, the potential regulatory mechanism of MIR31HG and its target genes needed to be validated via further experiments in future studies. Therefore, in future, well‐designed studies with more sample size, and further research studies are needed to verify our analysis results.

CONCLUSIONS

In digestive system cancers, low MIR31HG expression was significantly related to shorter OS. The high MIR31HG expression was associated with worse OS of the patients with respiratory system cancers, head and neck tumors, and cervical cancer patients. MIR31HG might act as a potential prognostic biomarker. Moreover, in future, the well‐designed studies and further research studies are needed to verify our analysis results.

CONFLICT OF INTEREST

The authors declare that they have no competing interests.

AUTHOR CONTRIBUTIONS

LJP designed the study. YFW and YJZ wrote the original draft. YFW, YJZ, and LJP revised the manuscript. YFW, YJZ, XAL, and SJ analyzed data. YFW, YJZ, JFJ, and XAL organized the figure data. LJP, LZ, CYW, HZ, JMH, LHW, and XHS reviewed and edited the manuscript. All authors read and approved the final manuscript.
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