Literature DB >> 34782960

Genomic Organization of Streptomyces flavotricini NGL1 and Streptomyces erythrochromogenes HMS4 Reveals Differential Plant Beneficial Attributes and Laccase Production Capabilities.

Richa Salwan1, Randhir Kaur2, Vivek Sharma3.   

Abstract

The genus Streptomyces has been explored in industrial sectors due to its endurance to environmental stresses, the production of a plethora of biomolecules, the biological remediation of soils, and alleviating plant stresses. The whole genome of NGL1 and HMS4 was sequenced due to the specific laccase activity against 2,6-dimethoxyphenol (2,6-DMP) and differential plant beneficial attributes. The deduced genome of 8.85 Mbp and 7.73 Mbp in size with a G+C content of 72.03% and 72.3% was obtained for NGL1 and HMS4, respectively. A total of 8438 and 7322 protein coding genes, 155 (130 tRNA, 25 rRNA) and 145 tRNA (121 tRNA, 24 rRNA) coding genes were predicted in NGL1 and HMS4, respectively. The comparative genomics of NGL1 and HMS4 showed 185 and 162 genes encoding for carbohydrate-active enzymes, respectively. The genomic ability of these strains to encode carbohydrate-active enzymes, laccase, and diversity of BGCs, along with plant beneficial attributes to suppress the plant pathogens can be used for several industrial and agricultural applications.
© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Actinobacteria; Biocontrol; Genome; Laccase

Mesh:

Substances:

Year:  2021        PMID: 34782960     DOI: 10.1007/s12033-021-00424-6

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  37 in total

1.  Phylogenetic study of the species within the family Streptomycetaceae.

Authors:  D P Labeda; M Goodfellow; R Brown; A C Ward; B Lanoot; M Vanncanneyt; J Swings; S-B Kim; Z Liu; J Chun; T Tamura; A Oguchi; T Kikuchi; H Kikuchi; T Nishii; K Tsuji; Y Yamaguchi; A Tase; M Takahashi; T Sakane; K I Suzuki; K Hatano
Journal:  Antonie Van Leeuwenhoek       Date:  2011-11-02       Impact factor: 2.271

Review 2.  Friends and foes: streptomycetes as modulators of plant disease and symbiosis.

Authors:  Silvia D Schrey; Mika T Tarkka
Journal:  Antonie Van Leeuwenhoek       Date:  2008-04-17       Impact factor: 2.271

3.  Genome wide underpinning of antagonistic and plant beneficial attributes of Bacillus sp. SBA12.

Authors:  Richa Salwan; Vivek Sharma
Journal:  Genomics       Date:  2020-04-01       Impact factor: 5.736

4.  Streptomyces pactum combined with manure compost alters soil fertility and enzymatic activities, enhancing phytoextraction of potentially toxic metals (PTMs) in a smelter-contaminated soil.

Authors:  Di Guo; Chunyan Ren; Amjad Ali; Ronghua Li; Juan Du; Xiangyu Liu; Weidou Guan; Zengqiang Zhang
Journal:  Ecotoxicol Environ Saf       Date:  2019-06-13       Impact factor: 6.291

Review 5.  Molecular and biotechnological aspects of secondary metabolites in actinobacteria.

Authors:  Richa Salwan; Vivek Sharma
Journal:  Microbiol Res       Date:  2019-11-12       Impact factor: 5.415

Review 6.  Exploration and genome mining of natural products from marine Streptomyces.

Authors:  Zhijie Yang; Jianqiao He; Xin Wei; Jianhua Ju; Junying Ma
Journal:  Appl Microbiol Biotechnol       Date:  2019-11-26       Impact factor: 4.813

7.  Mediational influence of spent mushroom compost on phytoremediation of black-oil hydrocarbon polluted soil and response of Megathyrsus maximus Jacq.

Authors:  Michael Dare Asemoloye; Segun Gbolagade Jonathan; Adeniyi A Jayeola; Rafiq Ahmad
Journal:  J Environ Manage       Date:  2017-06-03       Impact factor: 6.789

8.  Coupling of bioaugmentation and biostimulation to improve lindane removal from different soil types.

Authors:  Enzo E Raimondo; Juliana M Saez; Juan D Aparicio; María S Fuentes; Claudia S Benimeli
Journal:  Chemosphere       Date:  2019-08-05       Impact factor: 7.086

9.  Plant growth-promoting activities of Streptomyces spp. in sorghum and rice.

Authors:  Subramaniam Gopalakrishnan; Vadlamudi Srinivas; Meesala Sree Vidya; Abhishek Rathore
Journal:  Springerplus       Date:  2013-10-29

Review 10.  Mini review: Genome mining approaches for the identification of secondary metabolite biosynthetic gene clusters in Streptomyces.

Authors:  Namil Lee; Soonkyu Hwang; Jihun Kim; Suhyung Cho; Bernhard Palsson; Byung-Kwan Cho
Journal:  Comput Struct Biotechnol J       Date:  2020-06-21       Impact factor: 7.271

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