Literature DB >> 32004090

Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions.

Jeong-Mo Choi1,2,3, Alex S Holehouse1,2, Rohit V Pappu1,2.   

Abstract

Many biomolecular condensates appear to form via spontaneous or driven processes that have the hallmarks of intracellular phase transitions. This suggests that a common underlying physical framework might govern the formation of functionally and compositionally unrelated biomolecular condensates. In this review, we summarize recent work that leverages a stickers-and-spacers framework adapted from the field of associative polymers for understanding how multivalent protein and RNA molecules drive phase transitions that give rise to biomolecular condensates. We discuss how the valence of stickers impacts the driving forces for condensate formation and elaborate on how stickers can be distinguished from spacers in different contexts. We touch on the impact of sticker- and spacer-mediated interactions on the rheological properties of condensates and show how the model can be mapped to known drivers of different types of biomolecular condensates.

Keywords:  biomolecular condensates; phase separation; phase transition; stickers and spacers

Year:  2020        PMID: 32004090     DOI: 10.1146/annurev-biophys-121219-081629

Source DB:  PubMed          Journal:  Annu Rev Biophys        ISSN: 1936-122X            Impact factor:   12.981


  137 in total

1.  Mapping invisible epitopes by NMR spectroscopy.

Authors:  Emery T Usher; Scott A Showalter
Journal:  J Biol Chem       Date:  2020-12-18       Impact factor: 5.157

2.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

Review 3.  Phase separation drives decision making in cell division.

Authors:  Xing Liu; Xu Liu; Haowei Wang; Zhen Dou; Ke Ruan; Donald L Hill; Lin Li; Yunyu Shi; Xuebiao Yao
Journal:  J Biol Chem       Date:  2020-07-22       Impact factor: 5.157

Review 4.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

5.  Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation?

Authors:  Thuy P Dao; Carlos A Castañeda
Journal:  Bioessays       Date:  2020-09-03       Impact factor: 4.345

Review 6.  Phase-separated bacterial ribonucleoprotein bodies organize mRNA decay.

Authors:  Nisansala S Muthunayake; Dylan T Tomares; W Seth Childers; Jared M Schrader
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-05-23       Impact factor: 9.957

Review 7.  Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing.

Authors:  Simon Alberti; Anthony A Hyman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-01-28       Impact factor: 94.444

8.  Phase transition of RNA-protein complexes into ordered hollow condensates.

Authors:  Ibraheem Alshareedah; Mahdi Muhammad Moosa; Muralikrishna Raju; Davit A Potoyan; Priya R Banerjee
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-22       Impact factor: 11.205

Review 9.  Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery.

Authors:  Tongyin Zheng; Yiran Yang; Carlos A Castañeda
Journal:  Biochem J       Date:  2020-09-30       Impact factor: 3.857

10.  Dissecting the Functional Contributions of the Intrinsically Disordered C-terminal Tail of Bacillus subtilis FtsZ.

Authors:  Megan C Cohan; Anna M P Eddelbuettel; Petra A Levin; Rohit V Pappu
Journal:  J Mol Biol       Date:  2020-03-18       Impact factor: 5.469

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