Literature DB >> 34767659

Imaging Membrane Order and Dynamic Interactions in Living Cells with a DNA Zipper Probe.

Yousef Bagheri1, Ahsan Ausaf Ali1, Puspam Keshri1, James Chambers2, Anne Gershenson3, Mingxu You1.   

Abstract

The cell membrane is a dynamic and heterogeneous structure composed of distinct sub-compartments. Within these compartments, preferential interactions occur among various lipids and proteins. Currently, it is still challenging to image these short-lived membrane complexes, especially in living cells. In this work, we present a DNA-based probe, termed "DNA Zipper", which allows the membrane order and pattern of transient interactions to be imaged in living cells using standard fluorescence microscopes. By fine-tuning the length and binding affinity of DNA duplex, these probes can precisely extend the duration of membrane lipid interactions via dynamic DNA hybridization. The correlation between membrane order and the activation of T-cell receptor signaling has also been studied. These programmable DNA probes function after a brief cell incubation, which can be easily adapted to study lipid interactions and membrane order during different membrane signaling events.
© 2021 Wiley-VCH GmbH.

Entities:  

Keywords:  DNA probes; FRET; T-cell activation; cell membrane imaging; membrane order

Mesh:

Substances:

Year:  2021        PMID: 34767659      PMCID: PMC8792286          DOI: 10.1002/anie.202112033

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  63 in total

1.  Full activation of the T cell receptor requires both clustering and conformational changes at CD3.

Authors:  Susana Minguet; Mahima Swamy; Balbino Alarcón; Immanuel F Luescher; Wolfgang W A Schamel
Journal:  Immunity       Date:  2006-12-21       Impact factor: 31.745

2.  Elucidating membrane structure and protein behavior using giant plasma membrane vesicles.

Authors:  Erdinc Sezgin; Hermann-Josef Kaiser; Tobias Baumgart; Petra Schwille; Kai Simons; Ilya Levental
Journal:  Nat Protoc       Date:  2012-05-03       Impact factor: 13.491

3.  A DNA-Programmed Liposome Fusion Cascade.

Authors:  Philipp M G Löffler; Oliver Ries; Alexander Rabe; Anders H Okholm; Rasmus P Thomsen; Jørgen Kjems; Stefan Vogel
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-23       Impact factor: 15.336

4.  Transient GPI-anchored protein homodimers are units for raft organization and function.

Authors:  Kenichi G N Suzuki; Rinshi S Kasai; Koichiro M Hirosawa; Yuri L Nemoto; Munenori Ishibashi; Yoshihiro Miwa; Takahiro K Fujiwara; Akihiro Kusumi
Journal:  Nat Chem Biol       Date:  2012-07-22       Impact factor: 15.040

5.  Weak and Transient Protein Interactions Determined by Solid-State NMR.

Authors:  Hugh R W Dannatt; Michele Felletti; Stefan Jehle; Yao Wang; Lyndon Emsley; Nicholas E Dixon; Anne Lesage; Guido Pintacuda
Journal:  Angew Chem Int Ed Engl       Date:  2016-04-21       Impact factor: 15.336

Review 6.  Engineering Lipid Membranes with Programmable DNA Nanostructures.

Authors:  Qi Shen; Michael W Grome; Yang Yang; Chenxiang Lin
Journal:  Adv Biosyst       Date:  2019-12-09

7.  Mobility measurement by analysis of fluorescence photobleaching recovery kinetics.

Authors:  D Axelrod; D E Koppel; J Schlessinger; E Elson; W W Webb
Journal:  Biophys J       Date:  1976-09       Impact factor: 4.033

8.  Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer.

Authors:  Suraj Adhikary; Daniel J Deredge; Anu Nagarajan; Lucy R Forrest; Patrick L Wintrode; Satinder K Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

9.  Synthesis and spectral properties of a hydrophobic fluorescent probe: 6-propionyl-2-(dimethylamino)naphthalene.

Authors:  G Weber; F J Farris
Journal:  Biochemistry       Date:  1979-07-10       Impact factor: 3.162

10.  Multi-protein assemblies underlie the mesoscale organization of the plasma membrane.

Authors:  Sinem K Saka; Alf Honigmann; Christian Eggeling; Stefan W Hell; Thorsten Lang; Silvio O Rizzoli
Journal:  Nat Commun       Date:  2014-07-25       Impact factor: 14.919

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  2 in total

Review 1.  Digging into the biophysical features of cell membranes with lipid-DNA conjugates.

Authors:  Ahsan Ausaf Ali; Yousef Bagheri; Mingxu You
Journal:  Q Rev Biophys       Date:  2022-05-16       Impact factor: 7.440

2.  Enhancing cell membrane phase separation for inhibiting cancer metastasis with a stimuli-responsive DNA nanodevice.

Authors:  Yingying Su; Xiaoqing Chen; Hui Wang; Lele Sun; Ying Xu; Di Li
Journal:  Chem Sci       Date:  2022-05-02       Impact factor: 9.969

  2 in total

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