Literature DB >> 31934608

Engineering Lipid Membranes with Programmable DNA Nanostructures.

Qi Shen1, Michael W Grome1, Yang Yang1,2, Chenxiang Lin1.   

Abstract

Lipid and DNA are abundant biomolecules with critical functions in cells. The water-insoluble, amphipathic lipid molecules are best known for their roles in energy storage (e.g. as triglyceride), signaling (e.g. as sphingolipid), and compartmentalization (e.g. by forming membrane-enclosed bodies). The soluble, highly negatively charged DNA, which stores cells' genetic information, has proven to be an excellent material for constructing programmable nanostructures in vitro thanks to its self-assembling capabilities. These two seemingly distant molecules make contact within cell nuclei, often via lipidated proteins, with proposed functions of modulating chromatin structures. Carefully formulated lipid/DNA complexes are promising reagents for gene therapy. The past few years saw an emerging research field of interfacing DNA nanostructures with lipid membranes, with an overarching goal of generating DNA/lipid hybrid materials that possess novel and controllable structure, dynamics, and function. An arsenal of DNA-based tools has been created to coat, mold, deform, and penetrate lipid bilayers, affording us the ability to manipulate membranes with nanoscopic precision. These membrane engineering methods not only enable quantitative biophysical studies, but also open new opportunities in synthetic biology (e.g. artificial cells) and therapeutics (e.g. drug delivery).

Entities:  

Keywords:  DNA nanotechnology; lipid bilayers; membrane curvature; membrane remodeling; nanopores; vesicles

Mesh:

Substances:

Year:  2019        PMID: 31934608      PMCID: PMC6957268          DOI: 10.1002/adbi.201900215

Source DB:  PubMed          Journal:  Adv Biosyst        ISSN: 2366-7478


  122 in total

1.  Amphipathic DNA origami nanoparticles to scaffold and deform lipid membrane vesicles.

Authors:  Aleksander Czogalla; Dominik J Kauert; Henri G Franquelim; Veselina Uzunova; Yixin Zhang; Ralf Seidel; Petra Schwille
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-16       Impact factor: 15.336

Review 2.  Designer nucleic acids to probe and program the cell.

Authors:  Yamuna Krishnan; Mark Bathe
Journal:  Trends Cell Biol       Date:  2012-11-08       Impact factor: 20.808

3.  Hydrophobic actuation of a DNA origami bilayer structure.

Authors:  Jonathan List; Michael Weber; Friedrich C Simmel
Journal:  Angew Chem Int Ed Engl       Date:  2014-03-11       Impact factor: 15.336

4.  DNA-cholesterol barges as programmable membrane-exploring agents.

Authors:  Alexander Johnson-Buck; Shuoxing Jiang; Hao Yan; Nils G Walter
Journal:  ACS Nano       Date:  2014-05-19       Impact factor: 15.881

5.  Block Copolymer Micellization as a Protection Strategy for DNA Origami.

Authors:  Nayan P Agarwal; Michael Matthies; Fatih N Gür; Kensuke Osada; Thorsten L Schmidt
Journal:  Angew Chem Int Ed Engl       Date:  2017-03-15       Impact factor: 15.336

6.  Covalently circularized nanodiscs for studying membrane proteins and viral entry.

Authors:  Mahmoud L Nasr; Diego Baptista; Mike Strauss; Zhen-Yu J Sun; Simina Grigoriu; Sonja Huser; Andreas Plückthun; Franz Hagn; Thomas Walz; James M Hogle; Gerhard Wagner
Journal:  Nat Methods       Date:  2016-11-21       Impact factor: 28.547

7.  Placing and shaping liposomes with reconfigurable DNA nanocages.

Authors:  Zhao Zhang; Yang Yang; Frederic Pincet; Marc C Llaguno; Chenxiang Lin
Journal:  Nat Chem       Date:  2017-06-23       Impact factor: 24.427

8.  Dynamic assembly/disassembly processes of photoresponsive DNA origami nanostructures directly visualized on a lipid membrane surface.

Authors:  Yuki Suzuki; Masayuki Endo; Yangyang Yang; Hiroshi Sugiyama
Journal:  J Am Chem Soc       Date:  2014-01-24       Impact factor: 15.419

9.  Bilayer-spanning DNA nanopores with voltage-switching between open and closed state.

Authors:  Astrid Seifert; Kerstin Göpfrich; Jonathan R Burns; Niels Fertig; Ulrich F Keyser; Stefan Howorka
Journal:  ACS Nano       Date:  2014-12-16       Impact factor: 15.881

10.  Ionic permeability and mechanical properties of DNA origami nanoplates on solid-state nanopores.

Authors:  Calin Plesa; Adithya N Ananth; Veikko Linko; Coen Gülcher; Allard J Katan; Hendrik Dietz; Cees Dekker
Journal:  ACS Nano       Date:  2013-12-05       Impact factor: 15.881

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  8 in total

1.  Imaging Membrane Order and Dynamic Interactions in Living Cells with a DNA Zipper Probe.

Authors:  Yousef Bagheri; Ahsan Ausaf Ali; Puspam Keshri; James Chambers; Anne Gershenson; Mingxu You
Journal:  Angew Chem Int Ed Engl       Date:  2021-12-22       Impact factor: 15.336

Review 2.  Digging into the biophysical features of cell membranes with lipid-DNA conjugates.

Authors:  Ahsan Ausaf Ali; Yousef Bagheri; Mingxu You
Journal:  Q Rev Biophys       Date:  2022-05-16       Impact factor: 7.440

Review 3.  Prospects and challenges of dynamic DNA nanostructures in biomedical applications.

Authors:  Taoran Tian; Yanjing Li; Yunfeng Lin
Journal:  Bone Res       Date:  2022-05-23       Impact factor: 13.362

4.  Hydrophobic Interactions between DNA Duplexes and Synthetic and Biological Membranes.

Authors:  Sioned F Jones; Himanshu Joshi; Stephen J Terry; Jonathan R Burns; Aleksei Aksimentiev; Ulrike S Eggert; Stefan Howorka
Journal:  J Am Chem Soc       Date:  2021-05-20       Impact factor: 15.419

5.  Sorting sub-150-nm liposomes of distinct sizes by DNA-brick-assisted centrifugation.

Authors:  Yang Yang; Zhenyong Wu; Laurie Wang; Kaifeng Zhou; Kai Xia; Qiancheng Xiong; Longfei Liu; Zhao Zhang; Edwin R Chapman; Yong Xiong; Thomas J Melia; Erdem Karatekin; Hongzhou Gu; Chenxiang Lin
Journal:  Nat Chem       Date:  2021-03-30       Impact factor: 24.274

Review 6.  The biological applications of DNA nanomaterials: current challenges and future directions.

Authors:  Wenjuan Ma; Yuxi Zhan; Yuxin Zhang; Chenchen Mao; Xueping Xie; Yunfeng Lin
Journal:  Signal Transduct Target Ther       Date:  2021-10-08

7.  Efficient and selective DNA modification on bacterial membranes.

Authors:  Qian Tian; Yousef Bagheri; Puspam Keshri; Rigumula Wu; Kewei Ren; Qikun Yu; Bin Zhao; Mingxu You
Journal:  Chem Sci       Date:  2020-12-28       Impact factor: 9.825

8.  DNA-Origami NanoTrap for Studying the Selective Barriers Formed by Phenylalanine-Glycine-Rich Nucleoporins.

Authors:  Qi Shen; Taoran Tian; Qiancheng Xiong; Patrick D Ellis Fisher; Yong Xiong; Thomas J Melia; C Patrick Lusk; Chenxiang Lin
Journal:  J Am Chem Soc       Date:  2021-07-29       Impact factor: 16.383

  8 in total

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