Literature DB >> 3475978

Multipoint gene mapping using seriation. I. General methods.

K H Buetow, A Chakravarti.   

Abstract

Initial and accurate inference of locus order and estimates of interlocus distances and interference can be obtained using seriation techniques. The analysis requires a matrix of recombination values that can be estimated by standard pairwise linkage analysis. This allows combination of results from individual investigators without reanalysis of basic pedigree material. Seriation can be performed without the use of a computer.

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Year:  1987        PMID: 3475978      PMCID: PMC1684223     

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  9 in total

1.  Sequential tests for the detection of linkage.

Authors:  N E MORTON
Journal:  Am J Hum Genet       Date:  1955-09       Impact factor: 11.025

2.  Linkage group I: the simultaneous estimation of recombination and interference.

Authors:  D A Meyers; P M Conneally; E W Lovrien; R E Magenis; A D Merritt; J A Norton; C G Palmer; M L Rivas; L Wang; P L Yu
Journal:  Birth Defects Orig Artic Ser       Date:  1976

3.  Linkage mapping from pair-wise recombination data.

Authors:  J M Lalouel
Journal:  Heredity (Edinb)       Date:  1977-02       Impact factor: 3.821

4.  A genetic map of human chromosome 11p.

Authors:  K H Buetow; A Chakravarti; S A Cole
Journal:  Genet Epidemiol Suppl       Date:  1986

5.  Multipoint gene mapping using seriation. II. Analysis of simulated and empirical data.

Authors:  K H Buetow; A Chakravarti
Journal:  Am J Hum Genet       Date:  1987-08       Impact factor: 11.025

6.  Estimation of the recombination fraction in human pedigrees: efficient computation of the likelihood for human linkage studies.

Authors:  J Ott
Journal:  Am J Hum Genet       Date:  1974-09       Impact factor: 11.025

7.  A chiasma map of man.

Authors:  N E Morton; D C Rao; J Lindsten; M Hultén; S Yee
Journal:  Hum Hered       Date:  1977       Impact factor: 0.444

8.  A maximum likelihood map of chromosome 1.

Authors:  D C Rao; B J Keats; J M Lalouel; N E Morton; S Yee
Journal:  Am J Hum Genet       Date:  1979-11       Impact factor: 11.025

9.  Strategies for multilocus linkage analysis in humans.

Authors:  G M Lathrop; J M Lalouel; C Julier; J Ott
Journal:  Proc Natl Acad Sci U S A       Date:  1984-06       Impact factor: 11.205

  9 in total
  19 in total

1.  Constructing linkage maps in autotetraploid species using simulated annealing.

Authors:  C A Hackett; B Pande; G J Bryan
Journal:  Theor Appl Genet       Date:  2003-02-08       Impact factor: 5.699

2.  Monte Carlo simulations on marker grouping and ordering.

Authors:  J Wu; J Jenkins; J Zhu; J McCarty; C Watson
Journal:  Theor Appl Genet       Date:  2003-05-22       Impact factor: 5.699

3.  RECORD: a novel method for ordering loci on a genetic linkage map.

Authors:  Hans Van Os; Piet Stam; Richard G F Visser; Herman J Van Eck
Journal:  Theor Appl Genet       Date:  2005-10-14       Impact factor: 5.699

4.  Monte Carlo comparison of preliminary methods for ordering multiple genetic loci.

Authors:  J M Olson; M Boehnke
Journal:  Am J Hum Genet       Date:  1990-09       Impact factor: 11.025

5.  Development of an integrated genetic map of a sugarcane (Saccharum spp.) commercial cross, based on a maximum-likelihood approach for estimation of linkage and linkage phases.

Authors:  A A F Garcia; E A Kido; A N Meza; H M B Souza; L R Pinto; M M Pastina; C S Leite; J A G da Silva; E C Ulian; A Figueira; A P Souza
Journal:  Theor Appl Genet       Date:  2005-11-24       Impact factor: 5.699

6.  Genetic loci ordering instability: an example.

Authors:  H Falk; C T Falk
Journal:  Am J Hum Genet       Date:  1990-06       Impact factor: 11.025

7.  QTL analysis of the spring wheat "Chapio" identifies stable stripe rust resistance despite inter-continental genotype × environment interactions.

Authors:  E-N Yang; G M Rosewarne; S A Herrera-Foessel; J Huerta-Espino; Z-X Tang; C-F Sun; Z-L Ren; R P Singh
Journal:  Theor Appl Genet       Date:  2013-04-05       Impact factor: 5.699

8.  Comparisons of four approximation algorithms for large-scale linkage map construction.

Authors:  Jixiang Wu; Johnie N Jenkins; Jack C McCarty; Xiang-Yang Lou
Journal:  Theor Appl Genet       Date:  2011-05-25       Impact factor: 5.699

9.  Multipoint gene mapping using seriation. II. Analysis of simulated and empirical data.

Authors:  K H Buetow; A Chakravarti
Journal:  Am J Hum Genet       Date:  1987-08       Impact factor: 11.025

10.  Empirical power of three preliminary methods for ordering loci.

Authors:  C M Kammerer; J W MacCluer
Journal:  Am J Hum Genet       Date:  1988-12       Impact factor: 11.025

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