Literature DB >> 6587361

Strategies for multilocus linkage analysis in humans.

G M Lathrop, J M Lalouel, C Julier, J Ott.   

Abstract

The increasing number of DNA polymorphisms characterized in humans will soon allow the construction of fine genetic maps of human chromosomes. This advance calls for a reexamination of current methodologies for linkage analysis by the family method. We have investigated the relative efficiency of two-point and three-point linkage tests for the detection of linkage and the estimation of recombination in a variety of situations. This led us to develop the computer program LINKAGE to perform multilocus linkage analysis. The investigation also enables us to propose a method of location scores for the efficient detection of linkage between a disease locus, or a new genetic marker, and a linkage group previously established from a reference panel of families. The method is illustrated by an application to simulated pedigree data in a situation akin to Duchenne muscular dystrophy. These results show that considerable economy and efficiency can be brought to the mapping endeavor by resorting to appropriate strategies of detecting linkage and by constructing the human genetic map on a common reference panel of families.

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Mesh:

Year:  1984        PMID: 6587361      PMCID: PMC345524          DOI: 10.1073/pnas.81.11.3443

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  Sequential tests for the detection of linkage.

Authors:  N E MORTON
Journal:  Am J Hum Genet       Date:  1955-09       Impact factor: 11.025

2.  Linkage group I: the simultaneous estimation of recombination and interference.

Authors:  D A Meyers; P M Conneally; E W Lovrien; R E Magenis; A D Merritt; J A Norton; C G Palmer; M L Rivas; L Wang; P L Yu
Journal:  Birth Defects Orig Artic Ser       Date:  1976

3.  The use of lod scores for the determination of the order of loci on a chromosome.

Authors:  E Sturt
Journal:  Ann Hum Genet       Date:  1975-10       Impact factor: 1.670

4.  Linkage mapping from pair-wise recombination data.

Authors:  J M Lalouel
Journal:  Heredity (Edinb)       Date:  1977-02       Impact factor: 3.821

5.  Estimation of the recombination fraction in human pedigrees: efficient computation of the likelihood for human linkage studies.

Authors:  J Ott
Journal:  Am J Hum Genet       Date:  1974-09       Impact factor: 11.025

6.  An analysis procedure illustrated on a triple linkage of use for prenatal diagnosis of myotonic dystrophy.

Authors:  J H Renwick; D R Bolling
Journal:  J Med Genet       Date:  1971-12       Impact factor: 6.318

7.  Linkage relationship of a cloned DNA sequence on the short arm of the X chromosome to Duchenne muscular dystrophy.

Authors:  J M Murray; K E Davies; P S Harper; L Meredith; C R Mueller; R Williamson
Journal:  Nature       Date:  1982-11-04       Impact factor: 49.962

8.  Resolution of linkage for irregular phenotype systems.

Authors:  N E Morton; J M Lalouel
Journal:  Hum Hered       Date:  1981       Impact factor: 0.444

9.  The use of computers.

Authors:  J H Edwards
Journal:  Cytogenet Cell Genet       Date:  1982

10.  A maximum likelihood map of chromosome 1.

Authors:  D C Rao; B J Keats; J M Lalouel; N E Morton; S Yee
Journal:  Am J Hum Genet       Date:  1979-11       Impact factor: 11.025

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  906 in total

1.  Highly skewed X-chromosome inactivation is associated with idiopathic recurrent spontaneous abortion.

Authors:  M C Lanasa; W A Hogge; C Kubik; J Blancato; E P Hoffman
Journal:  Am J Hum Genet       Date:  1999-07       Impact factor: 11.025

2.  Assessment of parent-of-origin effects in linkage analysis of quantitative traits.

Authors:  R L Hanson; S Kobes; R S Lindsay; W C Knowler
Journal:  Am J Hum Genet       Date:  2001-03-13       Impact factor: 11.025

3.  Shwachman-Diamond syndrome with exocrine pancreatic dysfunction and bone marrow failure maps to the centromeric region of chromosome 7.

Authors:  S Goobie; M Popovic; J Morrison; L Ellis; H Ginzberg; G R Boocock; N Ehtesham; C Bétard; C G Brewer; N M Roslin; T J Hudson; K Morgan; T M Fujiwara; P R Durie; J M Rommens
Journal:  Am J Hum Genet       Date:  2001-03-15       Impact factor: 11.025

4.  Linkage analysis in the presence of errors IV: joint pseudomarker analysis of linkage and/or linkage disequilibrium on a mixture of pedigrees and singletons when the mode of inheritance cannot be accurately specified.

Authors:  H H Göring; J D Terwilliger
Journal:  Am J Hum Genet       Date:  2000-03-23       Impact factor: 11.025

5.  Linkage analysis in the presence of errors III: marker loci and their map as nuisance parameters.

Authors:  H H Göring; J D Terwilliger
Journal:  Am J Hum Genet       Date:  2000-03-23       Impact factor: 11.025

6.  Linkage analysis in the presence of errors I: complex-valued recombination fractions and complex phenotypes.

Authors:  H H Göring; J D Terwilliger
Journal:  Am J Hum Genet       Date:  2000-03       Impact factor: 11.025

7.  Parametric and nonparametric multipoint linkage analysis with imprinting and two-locus-trait models: application to mite sensitization.

Authors:  K Strauch; R Fimmers; T Kurz; K A Deichmann; T F Wienker; M P Baur
Journal:  Am J Hum Genet       Date:  2000-05-04       Impact factor: 11.025

8.  A genomic scan of families with prostate cancer identifies multiple regions of interest.

Authors:  M Gibbs; J L Stanford; G P Jarvik; M Janer; M Badzioch; M A Peters; E L Goode; S Kolb; L Chakrabarti; M Shook; R Basom; E A Ostrander; L Hood
Journal:  Am J Hum Genet       Date:  2000-05-19       Impact factor: 11.025

9.  A new variant of Charcot-Marie-Tooth disease type 2 is probably the result of a mutation in the neurofilament-light gene.

Authors:  I V Mersiyanova; A V Perepelov; A V Polyakov; V F Sitnikov; E L Dadali; R B Oparin; A N Petrin; O V Evgrafov
Journal:  Am J Hum Genet       Date:  2000-06-07       Impact factor: 11.025

10.  A gene for an autosomal dominant scleroatrophic syndrome predisposing to skin cancer (Huriez syndrome) maps to chromosome 4q23.

Authors:  Y A Lee; H P Stevens; E Delaporte; U Wahn; A Reis
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

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