| Literature DB >> 34724350 |
Sandra Barroso-Arévalo1,2, Alberto Barneto3, Ángel Manuel Ramos4,5, Belén Rivera1,2, Rocío Sánchez1,2, Lidia Sánchez-Morales1,2, Marta Pérez-Sancho1,2, Aránzazu Buendía1,2, Elisa Ferreras6, Juan Carlos Ortiz-Menéndez7, Inmaculada Moreno8, Consuelo Serres9, Carmen Vela10, María Ángeles Risalde11,12, Lucas Domínguez1,2, José M Sánchez-Vizcaíno1,2.
Abstract
The disease produced by the severe acute respiratory syndrome-related coronavirus 2 (SARS-CoV-2) is currently one of the primary concerns worldwide. Knowing the zoonotic origin of the disease and that several animal species, including dogs and cats, are susceptible to viral infection, it is critical to assess the relevance of pets in this pandemic. Here, we performed a large-scale study on SARS-CoV-2 serological and viral prevalence in cats and dogs in Spain in order to elucidate their role and susceptibility. Samples from animals in contact with COVID-19 positive people and/or compatible symptoms (n = 492), as well as from random animals (n = 1024), were taken. Despite the large number of animals analyzed, only 12 animals (eight dogs and four cats), which represents 0.79% of the total analyzed animals (n = 1516), were positive for viral SARS-CoV-2 RNA detection by reverse transcription quantitative PCR (RT-qPCR) in which viral isolation was possible in four animals. We detected neutralizing antibodies in 34 animals, four of them were also positive for PCR. This study evidences that pets are susceptible to SARS-CoV-2 infection in natural conditions but at a low level, as evidenced by the low percentage of positive animals detected, being infected humans the main source of infection. However, the inclusion of animals in the surveillance of COVID-19 is still recommended.Entities:
Keywords: RT-qPCR; SARS-CoV-2; cats; dogs; neutralizing antibodies; viral isolation
Mesh:
Substances:
Year: 2021 PMID: 34724350 PMCID: PMC8661836 DOI: 10.1111/tbed.14366
Source DB: PubMed Journal: Transbound Emerg Dis ISSN: 1865-1674 Impact factor: 4.521
Dog and cat census estimate for each Autonomous Community used in this study. Source: Veterindustria
| Autonomous Community | Dog census estimate (number of dogs) | Cat census estimate (number of cats) |
|---|---|---|
| Andalucía | 1,621,636 | 754,765 |
| Castilla la Mancha | 394,709 | 76,834 |
| Castilla y León | 447,188 | 340,428 |
| Cataluña | 537,977 | 406,479 |
| Ceuta | 7751 | 4220 |
| Comunidad de Madrid | 832,487 | 491,041 |
| Comunidad Valenciana | 873,343 | 500,658 |
| Navarra | 135,391 | 255,840 |
| País Vasco | 230,621 | 104,203 |
Number of animals sampled depending on the type of sampling (selective or random), and the represented percentage in each Autonomous Community
| Autonomous Community | Dogs | Cats | ||||
|---|---|---|---|---|---|---|
| Selective sampling | Random sampling | Total dogs (%) | Selective sampling | Random sampling | Total cats (%) | |
| Andalucía | 105 | 337 | 57.92 | 40 | 293 | 44.22 |
| Castilla la Mancha | 18 | 1 | 2.49 | 20 | 165 | 24.56 |
| Castilla y León | 24 | 4 | 3.66 | 11 | 29 | 5.31 |
| Cataluña | 9 | 25 | 4.45 | 15 | 22 | 4.91 |
| Ceuta | 18 | 0 | 2.35 | 5 | 0 | 0.66 |
| Comunidad de Madrid | 118 | 88 | 26.99 | 63 | 45 | 14.34 |
| Comunidad Valenciana | 0 | 0 | 0 | 16 | 15 | 4.11 |
| Navarra | 3 | 0 | 0.39 | 0 | 0 | 0 |
| País Vasco | 13 | 0 | 1.70 | 14 | 0 | 1.85 |
| Total | 308 | 455 | 100 | 184 | 569 | 100 |
| Total | 763 | 753 | ||||
| 1516 | ||||||
FIGURE 1Distribution of percentage of the total number of animals (dogs and cats) in each Autonomous Community in the period elapsed between July 2020 and April 2021
Positive animals and their distribution depending on the type of sampling, and the percentage represented in each sampling
| Species | PCR positive animals | PCR positive animals in total selective dogs/cats | Positives in total selective dogs/cats (%) | PCR positive animals in total random dogs/cats | % of positives in total random dogs/cats | Positive animals in total dogs/cats (selective + random) | Positives in total animals (%) |
|---|---|---|---|---|---|---|---|
| Dog | 8 | 8 out of 308 | 2.59 | 0 out of 455 | 0 | 8 out of 763 | 1.04 |
| Cat | 4 | 3 out of 184 | 1.63 | 1 out of 569 | 0.17 | 4 out of 753 | 0.53 |
Virological characteristics of positive dogs to reverse transcription quantitative PCR (RT‐qPCR)
|
| |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Animal ID | Species | Type of sampling and origin | Type of sample | E gene | RdRp IP2 | RdRp IP4 | Monitoring qRT‐PCR | Viral isolation | Viral neutralization titre | COVID‐19 positive contact | Animal symptoms compatible with SARS‐CoV‐2 infection |
| +D‐1 | Dog | Selective/Ceuta | Nasal swab | 27.1 | 26.5 | 27.3 | ND | ND | 1/128 (serum = 2 weeks after positive PCR) | Yes | None |
| Rectal swab | ND | ND | ND | ND | X | ||||||
| +D‐2 | Dog | Selective/Madrid | Nasal swab | ND | ND | ND | ND | X | Negative | Yes | None |
| Rectal swab | 35.21 | ND | 36.01 | ND | ND | ||||||
| Blood | ND | ND | ND | ND | X | ||||||
| +D‐3 | Dog | Selective/Madrid | Nasal swab | 37.76 | ND | ND | ND | ND | 1/64 (serum = 10 days after positive PCR) | Yes | None |
| Rectal swab | 32.14 | 30.73 | 33.21 | ND | Yes | ||||||
| Blood | ND | ND | ND | ND | X | ||||||
| +D‐4 | Dog | Selective/Castilla y León | Nasal swab | ND | 37.45 | 36.89 | ND | ND | Serum non‐available | Yes | None |
| Rectal swab | ND | ND | ND | ND | X | ||||||
| +D‐5 | Dog | Selective/Madrid | Nasal swab | ND | ND | ND | ND | X | Negative | Yes | Cough, lung crackles. Suspected brachycephalic syndrome |
| Rectal swab | 37.50 | ND | 35.80 | ND | ND | ||||||
| Blood | ND | ND | ND | ND | X | ||||||
| Saliva | ND | ND | ND | X | X | ||||||
| Loin skin | 34.92 | 36.55 | 35.10 | X | X | ||||||
| Foot skin | 35.82 | 32.62 | 34.46 | X | X | ||||||
| +D‐6 | Dog | Selective/Madrid | Nasal swab | 37.78 | ND | 34.28 | ND | ND | Negative | Yes | Diarrhoea |
| Rectal swab | ND | ND | ND | ND | X | ||||||
| Blood | ND | ND | ND | ND | X | ||||||
| +D‐7 | Dog | Selective/Madrid | Nasal swab | 20.05 | 19.78 | 19.89 | Positive (average | Yes | 1/256 (serum = 19 days after the first positive PCR) | Yes | None |
| Rectal swab | 26.09 | 25.60 | 26.08 | Positive (average | Yes | ||||||
| Blood | ND | ND | ND | ND | X | ||||||
| Hair and skin | 33.40 | 34.49 | 33.04 | Positive (average | X | ||||||
| +D‐8 | Dog | Selective/Andalucía | Nasal swab | ND | 32.11 | 33.12 | Non‐available | ND | 1/128 (serum = same day as positive PCR) | Yes | None |
| Rectal swab | ND | ND | ND | Non‐available | X | ||||||
| Blood | ND | ND | ND | Non‐available | X | ||||||
Abbreviation: ND, not detected; SARS‐CoV‐2, severe acute respiratory syndrome‐related coronavirus 2.
Monitoring PCR was performed 2 days after the original PCR.
Virological characteristics of positive cats to reverse transcription quantitative PCR (RT‐qPCR)
|
| |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Animal ID | Species | Type of sampling and origin | Type of sample | E gene | RdRp IP2 | RdRp IP4 | Monitoring qRT‐PCR | Viral isolation | Viral neutralization titre | COVID‐19 positive contact | Animal symptoms |
| +C‐1 | Cat | Random/Madrid | Oropharyngeal swab | 32.17 | 30.14 | 33.03 | Positive (average | Yes | Negative | No | History of diarrhoea secondary to chronic intestinal inflammation |
| Rectal swab | 34.84 | ND | 33.58 | ND | ND | ||||||
| Blood | ND | ND | ND | ND | X | ||||||
| +C‐2 | Cat | Selective/Castilla y León | Oropharyngeal swab | 31.99 | 30.78 | 30.18 | ND | Yes | 1/32 (serum = same day as positive PCR) | Yes | None |
| Rectal swab | ND | ND | ND | ND | X | ||||||
| Blood | ND | ND | ND | ND | X | ||||||
| +C‐3 | Cat | Selective/Castilla y León | Nasal swab | ND | 36.89 | 37.99 | ND | ND | Serum non‐available | Yes | None |
| Rectal swab | ND | ND | ND | ND | X | ||||||
| +C‐4 | Cat | Selective/Madrid | Oropharyngeal swab | 30.2 | ND | 30.8 | ND | ND |
1/64 (serum = same day as positive PCR) 1/32 (serum = 15 days after positive PCR) | Yes | Leukaemia and feline immunodeficiency viruses positive Nasal discharge, anorexia, hypersomnia. Enlarged retropharyngeal lymph node |
Abbreviations: Ct, cycle threshold; ND, not detected.
Virus isolation was possible from the first swab collected.
Two‐by‐two table used to determine the sensitivity and specificity of the adapted receptor‐binding domain (RBD) enzyme‐linked immunosorbent assay (ELISA) test comparing to the validated surrogate neutralization assay
| Serum result | Surrogate neutralization assay test positive | Surrogate neutralization assay test negative | Total test results |
|---|---|---|---|
| RBD ELISA test positive | 15 (TP) | 4 (FP) | 19 (total test positive) |
| RBD ELISA test negative | 1 (FN) | 80 (TN) | 81 (total test negative) |
| Total samples analyzed | 16 | 84 | 100 (total subsample) |
Abbreviations: FN, false negatives; FP, false positives; TN, true negatives; TP, true positives.
Positive animals for virus neutralization test (VNT)
| Animal ID | Species | VNT titre | PCR result | Positive contact | Symptoms |
|---|---|---|---|---|---|
| +D‐1 | Dog | 1/128 | Positive | Yes | No |
| +D‐3 | Dog | 1/64 | Positive | Yes | No |
| +D‐7 | Dog | 1/256 | Positive | Yes | No |
| +D‐8 | Dog | 1/128 | Positive | Yes | No |
| VTN‐D‐1 | Dog | 1/32 | Negative | Yes | No |
| VTN‐D‐2 | Dog | 1/64 | Negative | Yes | No |
| VTN‐D‐3 | Dog | 1/32 | Negative | Yes | No |
| VTN‐D‐4 | Dog | 1/64 | Negative | Yes | No |
| VTN‐D‐5 | Dog | 1/16 | Negative | Yes | No |
| VTN‐D‐6 | Dog | 1/128 | Negative | Yes | No |
| VTN‐D‐7 | Dog | 1/64 | Negative | Yes | No |
| VTN‐D‐8 | Dog | 1/128 | Negative | Yes | No |
| VTN‐D‐9 | Dog | 1/64 | Negative | Yes | No |
| VTN‐D‐10 | Dog | 1/128 | Negative | Yes | No |
| VTN‐D‐11 | Dog | 1/32 | Negative | Yes | Yes |
| VTN‐D‐12 | Dog | 1/64 | Negative | Yes | No |
| VTN‐D‐13 | Dog | 1/32 | Swab non‐available | No | No |
| VTN‐D‐14 | Dog | 1/64 | Negative | No | No |
| VTN‐D‐15 | Dog | 1/32 | Swab non‐available | No | No |
| VTN‐D‐16 | Dog | 1/128 | Swab non‐available | No | No |
| +C‐2 | Cat | 1/32 | Positive | Yes | No |
| +C‐4 | Cat | 1/64 and 1/32 | Positive | Yes | Yes |
| VTN‐C‐1 | Cat | 1/256 | Negative | Yes | Yes |
| VTN‐C‐2 | Cat | 1/128 | Negative | Yes | No |
| VTN‐C‐3 | Cat | 1/32 | Negative | Yes | Yes |
| VTN‐C‐4 | Cat | 1/64 | Negative | Yes | No |
| VTN‐C‐5 | Cat | 1/32 | Negative | Yes | Yes |
| VTN‐C‐6 | Cat | 1/16 | Negative | Yes | No |
| VTN‐C‐7 | Cat | 1/128 | Swab non‐available | Yes | No |
| VTN‐C‐8 | Cat | 1/64 | Negative | Yes | No |
| VTN‐C‐9 | Cat | 1/32 | Negative | No | Yes |
| VTN‐C‐10 | Cat | 1/64 | Negative | No | Yes |
| VTN‐C‐11 | Cat | 1/64 | Negative | Yes | No |
| VTN‐C‐12 | Cat | 1/128 | Negative | No | No |
Sera from animal +C‐4 was available at two points: when the original PCR positive sample was taken and 15 days after the original sampling.
Whole‐genome sequences obtained from three positive dogs and two positive cats, corresponding GenBank accession numbers and list of mutations found in the genome according to CoVsurver mutation app available at GISAID
| Animal ID | GenBank accession number | List of mutations displayed in structure (nearest residue if in loop/termini region) in the genome |
|---|---|---|
| +D‐1 | MZ902039 | D614G, Q675del(674), T676del(674), 677del(674), T678del(674), N679del(674) |
| +D‐3 | MZ902042 | D215A, T573I, D614G, Q675del(674), T676del(674), Q677del(674), T678del(674), N679del(674) |
| +D‐7 | MZ914594 | H69del, V70del, N501Y, A570D, D614G, P681H, T716I, S982A, D1118H, Y144del, D138H, E619K |
| +C‐1 | MZ901915 | D614G |
| +C‐2 | MZ902033 | T573I D614G, Q675del(674), T676del(674), Q677del(674), T678del(674), N679del(674) |
FIGURE 2Maximum likelihood phylogeny was estimated with n = 59 complete genomes sequences from the current (2019−2021) SARS‐CoV‐2 retrieved from GISAID. Open square indicates references from this study; open circle indicates the reference genome from Wuhan. Number along branch represents bootstrap score. Scale bar represents expected substitutions per nucleotide site