Literature DB >> 34711662

Systematic review of current natural language processing methods and applications in cardiology.

Meghan Reading Turchioe1, Alexander Volodarskiy2, Jyotishman Pathak3, Drew N Wright4, James Enlou Tcheng5, David Slotwiner3,2.   

Abstract

Natural language processing (NLP) is a set of automated methods to organise and evaluate the information contained in unstructured clinical notes, which are a rich source of real-world data from clinical care that may be used to improve outcomes and understanding of disease in cardiology. The purpose of this systematic review is to provide an understanding of NLP, review how it has been used to date within cardiology and illustrate the opportunities that this approach provides for both research and clinical care. We systematically searched six scholarly databases (ACM Digital Library, Arxiv, Embase, IEEE Explore, PubMed and Scopus) for studies published in 2015-2020 describing the development or application of NLP methods for clinical text focused on cardiac disease. Studies not published in English, lacking a description of NLP methods, non-cardiac focused and duplicates were excluded. Two independent reviewers extracted general study information, clinical details and NLP details and appraised quality using a checklist of quality indicators for NLP studies. We identified 37 studies developing and applying NLP in heart failure, imaging, coronary artery disease, electrophysiology, general cardiology and valvular heart disease. Most studies used NLP to identify patients with a specific diagnosis and extract disease severity using rule-based NLP methods. Some used NLP algorithms to predict clinical outcomes. A major limitation is the inability to aggregate findings across studies due to vastly different NLP methods, evaluation and reporting. This review reveals numerous opportunities for future NLP work in cardiology with more diverse patient samples, cardiac diseases, datasets, methods and applications. © Author(s) (or their employer(s)) 2022. No commercial re-use. See rights and permissions. Published by BMJ.

Entities:  

Keywords:  coronary artery disease; electronic health records; electrophysiology; heart failure

Mesh:

Year:  2022        PMID: 34711662      PMCID: PMC9046466          DOI: 10.1136/heartjnl-2021-319769

Source DB:  PubMed          Journal:  Heart        ISSN: 1355-6037            Impact factor:   7.365


  46 in total

1.  Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing.

Authors:  Sungrim Moon; Sijia Liu; Christopher G Scott; Sujith Samudrala; Mohamed M Abidian; Jeffrey B Geske; Peter A Noseworthy; Jane L Shellum; Rajeev Chaudhry; Steve R Ommen; Rick A Nishimura; Hongfang Liu; Adelaide M Arruda-Olson
Journal:  Int J Med Inform       Date:  2019-05-13       Impact factor: 4.046

2.  Utilizing Chinese Admission Records for MACE Prediction of Acute Coronary Syndrome.

Authors:  Danqing Hu; Zhengxing Huang; Tak-Ming Chan; Wei Dong; Xudong Lu; Huilong Duan
Journal:  Int J Environ Res Public Health       Date:  2016-09-13       Impact factor: 3.390

3.  Natural Language Processing for Detecting Medication-Related Notes in Heart Failure Telehealth Patients.

Authors:  Alphons Eggerth; Karl Kreiner; Dieter Hayn; Bernhard Pfeifer; Gerhard Pölzl; Tim Egelseer-Bründl; Günter Schreier
Journal:  Stud Health Technol Inform       Date:  2020-06-16

4.  Combining Structured and Unstructured Data for Predicting Risk of Readmission for Heart Failure Patients.

Authors:  Satish M Mahajan; Rayid Ghani
Journal:  Stud Health Technol Inform       Date:  2019-08-21

5.  Relationship between nursing documentation and patients' mortality.

Authors:  Sarah A Collins; Kenrick Cato; David Albers; Karen Scott; Peter D Stetson; Suzanne Bakken; David K Vawdrey
Journal:  Am J Crit Care       Date:  2013-07       Impact factor: 2.228

6.  Unlocking echocardiogram measurements for heart disease research through natural language processing.

Authors:  Olga V Patterson; Matthew S Freiberg; Melissa Skanderson; Samah J Fodeh; Cynthia A Brandt; Scott L DuVall
Journal:  BMC Cardiovasc Disord       Date:  2017-06-12       Impact factor: 2.298

7.  Can machine learning improve patient selection for cardiac resynchronization therapy?

Authors:  Szu-Yeu Hu; Enrico Santus; Alexander W Forsyth; Devvrat Malhotra; Josh Haimson; Neal A Chatterjee; Daniel B Kramer; Regina Barzilay; James A Tulsky; Charlotta Lindvall
Journal:  PLoS One       Date:  2019-10-03       Impact factor: 3.240

8.  Angina Severity, Mortality, and Healthcare Utilization Among Veterans With Stable Angina.

Authors:  Mina Owlia; John A Dodson; Jordan B King; Catherine G Derington; Jennifer S Herrick; Steven P Sedlis; Jacob Crook; Scott L DuVall; Joanne LaFleur; Richard Nelson; Olga V Patterson; Rashmee U Shah; Adam P Bress
Journal:  J Am Heart Assoc       Date:  2019-07-31       Impact factor: 5.501

9.  A Natural Language Processing Tool for Large-Scale Data Extraction from Echocardiography Reports.

Authors:  Chinmoy Nath; Mazen S Albaghdadi; Siddhartha R Jonnalagadda
Journal:  PLoS One       Date:  2016-04-28       Impact factor: 3.240

10.  Automating Quality Measures for Heart Failure Using Natural Language Processing: A Descriptive Study in the Department of Veterans Affairs.

Authors:  Jennifer Hornung Garvin; Youngjun Kim; Glenn Temple Gobbel; Michael E Matheny; Andrew Redd; Bruce E Bray; Paul Heidenreich; Dan Bolton; Julia Heavirland; Natalie Kelly; Ruth Reeves; Megha Kalsy; Mary Kane Goldstein; Stephane M Meystre
Journal:  JMIR Med Inform       Date:  2018-01-15
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  1 in total

1.  Deep Learning Analysis of Polish Electronic Health Records for Diagnosis Prediction in Patients with Cardiovascular Diseases.

Authors:  Kristof Anetta; Ales Horak; Wojciech Wojakowski; Krystian Wita; Tomasz Jadczyk
Journal:  J Pers Med       Date:  2022-05-25
  1 in total

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