| Literature DB >> 34676585 |
María C Montalvo Villalba1, Elena Sosa Glaria1, Licel de Los A Rodriguez Lay1, Odalys Valdés Ramirez1, Dayana Vallina García1, Amely Arencibia Garcia1, Javier Martinez Alfonso1, Dunia M Menes Llerena1, Loida Torres Pérez2, Sonia R Resik Aguirre1, Maria G Guzman Tirado1.
Abstract
One of the challenges for control and prevention of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection is the early diagnostic at the point of care. Several tests based on qualitative antigen detection have been developed; one of these is Elecsys SARS-CoV-2 Antigen immunoassay (Roche Diagnostics). In total, 523 nasopharyngeal swabs were randomly selected with the aims to evaluate sensitivity, specificity, cross-reactivity, positive and negative predictive value (PPV, NPV), and agreement of Elecsys SARS-CoV-2 Antigen immunoassay using reverse transcription-polymerase chain reaction (RT-PCR) STAT-NAT® coronavirus disease-2019 as reference test. Cross-reactivity was estimated using samples positive by RT-PCR to other respiratory viruses (influenza virus, parainfluenza virus, rhinovirus, coronavirus OC43, and HKU1). The overall sensitivity of Elecsys SARS-CoV-2 Antigen was 89.72% (288/321); specificity was 90.59% (183/202); and cross-reactivity to other respiratory viruses were not detected. Elecsys SARS-CoV-2 Antigen immunoassay showed a high sensitivity in samples with cycle threshold value <30, which ranged from 92.81% to 95.40%, independently of symptoms. PPV and NPV were 93.81% and 84.72%, respectively. The κ coefficient was 0.79 (95% confidence interval: 0.73-0.84), showing substantial agreement between both tests. The results suggest Elecsys SARS-CoV-2 Antigen immunoassay could be used as an alternative to RT-PCR testing, or in complement with it, to identify infectious individuals and reduce SARS-CoV-2 transmission.Entities:
Keywords: SARS-CoV-2 antigen tests; cross reactivity; immunoassay; sensitivity; specificity
Mesh:
Year: 2021 PMID: 34676585 PMCID: PMC8662245 DOI: 10.1002/jmv.27412
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 20.693
Stratification of NPS according to the epidemiological definition of samples and positivity to SARS‐CoV‐2 RT‐PCR
| Epidemiological definition of NPS samples (n) | RT‐PCR for SARS‐CoV‐2 | |
|---|---|---|
| Positives | Negatives | |
| Reference of confirmed cases (135) | 121 | 14 |
| Contact cases (132) | 63 | 69 |
| SARS‐CoV‐2 tracing at 5 days of diagnosis (78) | 52 | 26 |
| Suspected cases (59) | 34 | 25 |
| Surveillance (119) | 51 | 68 |
| Total (523) | 321 | 202 |
Abbreviations: NPS, nasopharyngeal swabs; RT‐PCR, reverse transcription‐polymerase chain reaction; SARS‐CoV‐2, severe acute respiratory syndrome coronavirus 2.
Distribution of sensitivity, specificity, PPV, and NPV according to the epidemiological definition of NPS samples
| Epidemiological definition of NPS samples | +RT PCR/ | % (95% CI) | |||
|---|---|---|---|---|---|
| Sensitivity | Specificity | PPV | NPV | ||
| Reference of confirmed cases | 121/135 | 99,17 (95.47–99.96) | 71.43 (45.35–88.28) | 96.77 (92.00–98.74) | 90.91 (62.26–99.53) |
| Contact cases | 63/132 | 82,81 (71.79–90.12) | 97.06 (89.90–99.48) | 94.55 (85.15–98.51) | 85.71 (76.20–91.83) |
| SARS‐CoV‐2 tracing at five days of diagnosis | 52/78 | 94.23 (84.36–98.43) | 96.15 (81.11–99.80) | 98.00 (89.50–99.90) | 89.29 (72.80–96.29) |
| Suspected cases | 34/59 | 79.41 (63.20–89.65) | 92.00 (75.03–98.58) | 93.10 (78.04–98.77) | 76.67 (59.07–88.21) |
| Surveillance | 51/119 | 78.43 (65.37–87.51) | 86.76 (76.72–92.88) | 81.63 (68.64–90.02) | 84.29 (74.01–90.99) |
| Total | 321/523 | 89.72 (85.87–92.82) | 90.59% (85.70–94.24) | 93.81 (90.50–96.23) | 84.72% (79.22–89.24) |
Abbreviations: CI, confidence interval; NPV, negative predictive value; PPV, positive predictive value; RT‐PCR, reverse transcription‐polymerase chain reaction; SARS‐CoV‐2, severe acute respiratory syndrome coronavirus 2.
FIGURE 1Distribution of COI values according to C t values in positive samples to SARS‐CoV‐2 RT‐PCR, taking into account the epidemiological definition. (A) Reference of confirmed cases; (B) contact cases; (C) SARS‐CoV‐2 tracing at 5 days of diagnosis; (D) suspect cases; and (E) surveillance. COI, cutoff index; RT‐PCR, reverse transcription‐polymerase chain reaction; SARS‐CoV‐2, severe acute respiratory syndrome coronavirus 2