Literature DB >> 3467347

The guanine and cytosine content of genomic DNA and bacterial evolution.

A Muto, S Osawa.   

Abstract

The genomic guanine and cytosine (G + C) content of eubacteria is related to their phylogeny. The G + C content of various parts of the genome (protein genes, stable RNA genes, and spacers) reveals a positive linear correlation with the G + C content of their genomic DNA. However, the plotted correlation slopes differ among various parts of the genome or among the first, second, and third positions of the codons depending on their functional importance. Facts suggest that biased mutation pressure, called A X T/G X C pressure, has affected whole DNA during evolution so as to determine the genomic G + C content in a given bacterium. The role of A X T/G X C pressure in diversification of bacterial DNA sequences and codon usage patterns is discussed in the perspective of the neutral theory of molecular evolution.

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Year:  1987        PMID: 3467347      PMCID: PMC304163          DOI: 10.1073/pnas.84.1.166

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  On the genetic basis of variation and heterogeneity of DNA base composition.

Authors:  N SUEOKA
Journal:  Proc Natl Acad Sci U S A       Date:  1962-04-15       Impact factor: 11.205

2.  The nucleotide composition of ribonucleic acids of soluble and particle fractions in several species of bacteria.

Authors:  K I MIURA
Journal:  Biochim Biophys Acta       Date:  1962-01-22

3.  Nucleotide sequence of a streptomycete aminoglycoside phosphotransferase gene and its relationship to phosphotransferases encoded by resistance plasmids.

Authors:  C J Thompson; G S Gray
Journal:  Proc Natl Acad Sci U S A       Date:  1983-09       Impact factor: 11.205

4.  Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1982-07-15       Impact factor: 5.469

5.  High guanine plus cytosine content in the third letter of codons of an extreme thermophile. DNA sequence of the isopropylmalate dehydrogenase of Thermus thermophilus.

Authors:  Y Kagawa; H Nojima; N Nukiwa; M Ishizuka; T Nakajima; T Yasuhara; T Tanaka; T Oshima
Journal:  J Biol Chem       Date:  1984-03-10       Impact factor: 5.157

6.  DNA methylation and the frequency of CpG in animal DNA.

Authors:  A P Bird
Journal:  Nucleic Acids Res       Date:  1980-04-11       Impact factor: 16.971

7.  Preferential use of A- and U-rich codons for Mycoplasma capricolum ribosomal proteins S8 and L6.

Authors:  A Muto; Y Kawauchi; F Yamao; S Osawa
Journal:  Nucleic Acids Res       Date:  1984-11-12       Impact factor: 16.971

8.  Evidence for use of rare codons in the dnaG gene and other regulatory genes of Escherichia coli.

Authors:  W Konigsberg; G N Godson
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

9.  Nitrogenase structural genes are unlinked in the nonlegume symbiont Parasponia rhizobium.

Authors:  K F Scott; B G Rolfe; J Shine
Journal:  DNA       Date:  1983

10.  Markedly unbiased codon usage in Bacillus subtilis.

Authors:  N Ogasawara
Journal:  Gene       Date:  1985       Impact factor: 3.688

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  222 in total

1.  ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes.

Authors:  Feng-Biao Guo; Hong-Yu Ou; Chun-Ting Zhang
Journal:  Nucleic Acids Res       Date:  2003-03-15       Impact factor: 16.971

2.  tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features.

Authors:  Christian Marck; Henri Grosjean
Journal:  RNA       Date:  2002-10       Impact factor: 4.942

3.  Differences in dinucleotide frequencies of thermophilic genes encoding water soluble and membrane proteins.

Authors:  Hiroshi Nakashima; Yuka Kuroda
Journal:  J Zhejiang Univ Sci B       Date:  2011-06       Impact factor: 3.066

4.  Evolutionary implications of microbial genome tetranucleotide frequency biases.

Authors:  David T Pride; Richard J Meinersmann; Trudy M Wassenaar; Martin J Blaser
Journal:  Genome Res       Date:  2003-02       Impact factor: 9.043

5.  Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene.

Authors:  E A Worthey; Santiago Martinez-Calvillo; Achim Schnaufer; Gautam Aggarwal; Jason Cawthra; Gholam Fazelinia; Chris Fong; Guoliang Fu; Melissa Hassebrock; Greg Hixson; Alasdair C Ivens; Patti Kiser; Felicia Marsolini; Erika Rickel; Erica Rickell; Reza Salavati; Ellen Sisk; Susan M Sunkin; Kenneth D Stuart; Peter J Myler
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

6.  Where does bacterial replication start? Rules for predicting the oriC region.

Authors:  Pawel Mackiewicz; Jolanta Zakrzewska-Czerwinska; Anna Zawilak; Miroslaw R Dudek; Stanislaw Cebrat
Journal:  Nucleic Acids Res       Date:  2004-07-16       Impact factor: 16.971

7.  Origin, structure, and regulation of argK, encoding the phaseolotoxin-resistant ornithine carbamoyltransferase in Pseudomonas syringae pv. phaseolicola, and functional expression of argK in transgenic tobacco.

Authors:  E Hatziloukas; N J Panopoulos
Journal:  J Bacteriol       Date:  1992-09       Impact factor: 3.490

8.  Codon usage between genomes is constrained by genome-wide mutational processes.

Authors:  Swaine L Chen; William Lee; Alison K Hottes; Lucy Shapiro; Harley H McAdams
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-27       Impact factor: 11.205

9.  Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization.

Authors:  Eduardo P C Rocha
Journal:  Genome Res       Date:  2004-10-12       Impact factor: 9.043

10.  Compositional heterogeneity of the Escherichia coli genome: a role for VSP repair?

Authors:  G Gutiérrez; J Casadesús; J L Oliver; A Marín
Journal:  J Mol Evol       Date:  1994-10       Impact factor: 2.395

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