Literature DB >> 34650204

Revisiting tandem repeats in psychiatric disorders from perspectives of genetics, physiology, and brain evolution.

Xiao Xiao1, Chu-Yi Zhang1,2, Zhuohua Zhang3,4, Zhonghua Hu5,6,7,8,9,10,11, Ming Li12,13,14, Tao Li15,16.   

Abstract

Genome-wide association studies (GWASs) have revealed substantial genetic components comprised of single nucleotide polymorphisms (SNPs) in the heritable risk of psychiatric disorders. However, genetic risk factors not covered by GWAS also play pivotal roles in these illnesses. Tandem repeats, which are likely functional but frequently overlooked by GWAS, may account for an important proportion in the "missing heritability" of psychiatric disorders. Despite difficulties in characterizing and quantifying tandem repeats in the genome, studies have been carried out in an attempt to describe impact of tandem repeats on gene regulation and human phenotypes. In this review, we have introduced recent research progress regarding the genomic distribution and regulatory mechanisms of tandem repeats. We have also summarized the current knowledge of the genetic architecture and biological underpinnings of psychiatric disorders brought by studies of tandem repeats. These findings suggest that tandem repeats, in candidate psychiatric risk genes or in different levels of linkage disequilibrium (LD) with psychiatric GWAS SNPs and haplotypes, may modulate biological phenotypes related to psychiatric disorders (e.g., cognitive function and brain physiology) through regulating alternative splicing, promoter activity, enhancer activity and so on. In addition, many tandem repeats undergo tight natural selection in the human lineage, and likely exert crucial roles in human brain evolution. Taken together, the putative roles of tandem repeats in the pathogenesis of psychiatric disorders is strongly implicated, and using examples from previous literatures, we wish to call for further attention to tandem repeats in the post-GWAS era of psychiatric disorders.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34650204     DOI: 10.1038/s41380-021-01329-1

Source DB:  PubMed          Journal:  Mol Psychiatry        ISSN: 1359-4184            Impact factor:   15.992


  155 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

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Authors:  Melissa Gymrek
Journal:  Curr Opin Genet Dev       Date:  2017-02-16       Impact factor: 5.578

4.  A polymorphic microsatellite that mediates induction of PIG3 by p53.

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Journal:  Neuron       Date:  2021-04-21       Impact factor: 17.173

Review 6.  Molecular mechanisms underlying nucleotide repeat expansion disorders.

Authors:  Indranil Malik; Chase P Kelley; Eric T Wang; Peter K Todd
Journal:  Nat Rev Mol Cell Biol       Date:  2021-06-17       Impact factor: 113.915

7.  Tandem Repeats and Repeatomes: Delving Deeper into the 'Dark Matter' of Genomes.

Authors:  Anthony J Hannan
Journal:  EBioMedicine       Date:  2018-04-14       Impact factor: 8.143

8.  RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures.

Authors:  Lisanna Paladin; Martina Bevilacqua; Sara Errigo; Damiano Piovesan; Ivan Mičetić; Marco Necci; Alexander Miguel Monzon; Maria Laura Fabre; Jose Luis Lopez; Juliet F Nilsson; Javier Rios; Pablo Lorenzano Menna; Maia Cabrera; Martin Gonzalez Buitron; Mariane Gonçalves Kulik; Sebastian Fernandez-Alberti; Maria Silvina Fornasari; Gustavo Parisi; Antonio Lagares; Layla Hirsh; Miguel A Andrade-Navarro; Andrey V Kajava; Silvio C E Tosatto
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

9.  Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

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Journal:  Nat Commun       Date:  2021-06-02       Impact factor: 14.919

10.  Characterizing nucleotide variation and expansion dynamics in human-specific variable number tandem repeats.

Authors:  Meredith M Course; Arvis Sulovari; Kathryn Gudsnuk; Evan E Eichler; Paul N Valdmanis
Journal:  Genome Res       Date:  2021-07-09       Impact factor: 9.043

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3.  Structural variants and tandem repeats in the founder individuals of four F2 pig crosses and implications to F2 GWAS results.

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Review 4.  L1 Retrotransposons: A Potential Endogenous Regulator for Schizophrenia.

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