Literature DB >> 34140671

Molecular mechanisms underlying nucleotide repeat expansion disorders.

Indranil Malik1, Chase P Kelley2,3, Eric T Wang4, Peter K Todd5,6.   

Abstract

The human genome contains over one million short tandem repeats. Expansion of a subset of these repeat tracts underlies over fifty human disorders, including common genetic causes of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (C9orf72), polyglutamine-associated ataxias and Huntington disease, myotonic dystrophy, and intellectual disability disorders such as Fragile X syndrome. In this Review, we discuss the four major mechanisms by which expansion of short tandem repeats causes disease: loss of function through transcription repression, RNA-mediated gain of function through gelation and sequestration of RNA-binding proteins, gain of function of canonically translated repeat-harbouring proteins, and repeat-associated non-AUG translation of toxic repeat peptides. Somatic repeat instability amplifies these mechanisms and influences both disease age of onset and tissue specificity of pathogenic features. We focus on the crosstalk between these disease mechanisms, and argue that they often synergize to drive pathogenesis. We also discuss the emerging native functions of repeat elements and how their dynamics might contribute to disease at a larger scale than currently appreciated. Lastly, we propose that lynchpins tying these disease mechanisms and native functions together offer promising therapeutic targets with potential shared applications across this class of human disorders.
© 2021. Springer Nature Limited.

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Year:  2021        PMID: 34140671     DOI: 10.1038/s41580-021-00382-6

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   113.915


  258 in total

1.  Androgen receptor gene mutations in X-linked spinal and bulbar muscular atrophy.

Authors:  A R La Spada; E M Wilson; D B Lubahn; A E Harding; K H Fischbeck
Journal:  Nature       Date:  1991-07-04       Impact factor: 49.962

2.  Instability of a 550-base pair DNA segment and abnormal methylation in fragile X syndrome.

Authors:  I Oberlé; F Rousseau; D Heitz; C Kretz; D Devys; A Hanauer; J Boué; M F Bertheas; J L Mandel
Journal:  Science       Date:  1991-05-24       Impact factor: 47.728

3.  Mapping of DNA instability at the fragile X to a trinucleotide repeat sequence p(CCG)n.

Authors:  E J Kremer; M Pritchard; M Lynch; S Yu; K Holman; E Baker; S T Warren; D Schlessinger; G R Sutherland; R I Richards
Journal:  Science       Date:  1991-06-21       Impact factor: 47.728

Review 4.  A genomic view of short tandem repeats.

Authors:  Melissa Gymrek
Journal:  Curr Opin Genet Dev       Date:  2017-02-16       Impact factor: 5.578

Review 5.  Tandem repeats mediating genetic plasticity in health and disease.

Authors:  Anthony J Hannan
Journal:  Nat Rev Genet       Date:  2018-02-05       Impact factor: 53.242

6.  Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome.

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Journal:  Cell       Date:  1991-05-31       Impact factor: 41.582

7.  Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations.

Authors:  S Kruglyak; R T Durrett; M D Schug; C F Aquadro
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

8.  Variation of the CGG repeat at the fragile X site results in genetic instability: resolution of the Sherman paradox.

Authors:  Y H Fu; D P Kuhl; A Pizzuti; M Pieretti; J S Sutcliffe; S Richards; A J Verkerk; J J Holden; R G Fenwick; S T Warren
Journal:  Cell       Date:  1991-12-20       Impact factor: 41.582

9.  Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans.

Authors:  Javier Quilez; Audrey Guilmatre; Paras Garg; Gareth Highnam; Melissa Gymrek; Yaniv Erlich; Ricky S Joshi; David Mittelman; Andrew J Sharp
Journal:  Nucleic Acids Res       Date:  2016-04-07       Impact factor: 16.971

10.  The impact of short tandem repeat variation on gene expression.

Authors:  Stephanie Feupe Fotsing; Jonathan Margoliash; Catherine Wang; Shubham Saini; Richard Yanicky; Sharona Shleizer-Burko; Alon Goren; Melissa Gymrek
Journal:  Nat Genet       Date:  2019-11-01       Impact factor: 38.330

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  27 in total

1.  Repeat RNA Toxicity Drives Ribosomal RNA Processing Defects in SCA2.

Authors:  Geena Skariah; Roger Lee Albin
Journal:  Mov Disord       Date:  2021-11       Impact factor: 10.338

Review 2.  Revisiting tandem repeats in psychiatric disorders from perspectives of genetics, physiology, and brain evolution.

Authors:  Xiao Xiao; Chu-Yi Zhang; Zhuohua Zhang; Zhonghua Hu; Ming Li; Tao Li
Journal:  Mol Psychiatry       Date:  2021-10-14       Impact factor: 15.992

3.  Chemical interference with DSIF complex formation lowers synthesis of mutant huntingtin gene products and curtails mutant phenotypes.

Authors:  Ning Deng; Yun-Yun Wu; Yanan Feng; Wen-Chieh Hsieh; Jen-Shin Song; Yu-Shiuan Lin; Ya-Hsien Tseng; Wan-Jhu Liao; Yi-Fan Chu; Yu-Cheng Liu; En-Cheng Chang; Chia-Rung Liu; Sheh-Yi Sheu; Ming-Tsan Su; Hung-Chih Kuo; Stanley N Cohen; Tzu-Hao Cheng
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-01       Impact factor: 12.779

4.  CGG repeat expansion in NOTCH2NLC causes mitochondrial dysfunction and progressive neurodegeneration in Drosophila model.

Authors:  Jiaxi Yu; Tongling Liufu; Yilei Zheng; Jin Xu; Lingchao Meng; Wei Zhang; Yun Yuan; Daojun Hong; Nicolas Charlet-Berguerand; Zhaoxia Wang; Jianwen Deng
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-03       Impact factor: 12.779

Review 5.  C9orf72-Related Neurodegenerative Diseases: From Clinical Diagnosis to Therapeutic Strategies.

Authors:  Stefania Zampatti; Cristina Peconi; Rosa Campopiano; Stefano Gambardella; Carlo Caltagirone; Emiliano Giardina
Journal:  Front Aging Neurosci       Date:  2022-06-10       Impact factor: 5.702

6.  Mechanistic convergence across initiation sites for RAN translation in fragile X associated tremor ataxia syndrome.

Authors:  Yuan Zhang; M Rebecca Glineburg; Venkatesha Basrur; Kevin Conlon; Shannon E Wright; Amy Krans; Deborah A Hall; Peter K Todd
Journal:  Hum Mol Genet       Date:  2022-07-21       Impact factor: 5.121

Review 7.  Walking a tightrope: The complex balancing act of R-loops in genome stability.

Authors:  Joshua R Brickner; Jada L Garzon; Karlene A Cimprich
Journal:  Mol Cell       Date:  2022-05-03       Impact factor: 19.328

Review 8.  Singling out motor neurons in the age of single-cell transcriptomics.

Authors:  Jacob A Blum; Aaron D Gitler
Journal:  Trends Genet       Date:  2022-04-26       Impact factor: 11.821

Review 9.  Proteinopathies associated to repeat expansion disorders.

Authors:  Anthony Fourier; Isabelle Quadrio
Journal:  J Neural Transm (Vienna)       Date:  2022-01-24       Impact factor: 3.575

10.  Uninterrupted CAG repeat drives striatum-selective transcriptionopathy and nuclear pathogenesis in human Huntingtin BAC mice.

Authors:  Xiaofeng Gu; Jeffrey Richman; Peter Langfelder; Nan Wang; Shasha Zhang; Monica Bañez-Coronel; Huei-Bin Wang; Lucia Yang; Lalini Ramanathan; Linna Deng; Chang Sin Park; Christopher R Choi; Jeffrey P Cantle; Fuying Gao; Michelle Gray; Giovanni Coppola; Gillian P Bates; Laura P W Ranum; Steve Horvath; Christopher S Colwell; X William Yang
Journal:  Neuron       Date:  2022-02-02       Impact factor: 18.688

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