Literature DB >> 3464203

Estimating the power of a proposed linkage study: a practical computer simulation approach.

M Boehnke.   

Abstract

I describe a simulation method to estimate the power to detect linkage given a set of pedigrees of known structure and for which family history data may be available. This method can be applied to autosomal and X-linked dominant diseases; depending on the pedigrees under consideration, it will often be applicable for autosomal and X-linked recessive diseases. This power calculation can most usefully be undertaken after family history data are gathered, but prior to examination and testing of pedigree members to obtain marker information. Of key importance, the power calculation is straightforward to carry out and not too time-consuming; it is practical even on a microcomputer. The result of the power calculation is an objective answer to the question: Will my families be sufficient to demonstrate linkage?

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Year:  1986        PMID: 3464203      PMCID: PMC1683992     

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  11 in total

1.  The prior probability of autosomal linkage.

Authors:  R C Elston; K Lange
Journal:  Ann Hum Genet       Date:  1975-01       Impact factor: 1.670

2.  Sequential tests for the detection of linkage.

Authors:  N E MORTON
Journal:  Am J Hum Genet       Date:  1955-09       Impact factor: 11.025

Review 3.  The mapping of human chromosomes.

Authors:  J H Renwick
Journal:  Annu Rev Genet       Date:  1971       Impact factor: 16.830

4.  A computer program for linkage analysis of general human pedigrees.

Authors:  J Ott
Journal:  Am J Hum Genet       Date:  1976-09       Impact factor: 11.025

5.  Estimation of the recombination fraction in human pedigrees: efficient computation of the likelihood for human linkage studies.

Authors:  J Ott
Journal:  Am J Hum Genet       Date:  1974-09       Impact factor: 11.025

Review 6.  Sampling considerations in the design and analysis of family studies.

Authors:  R C Elston; G E Bonney
Journal:  Prog Clin Biol Res       Date:  1984

7.  The impact of RFLPs on human gene mapping.

Authors:  M H Skolnick; D T Bishop; C Cannings; S J Hasstedt
Journal:  Prog Clin Biol Res       Date:  1984

8.  How many polymorphic genes will it take to span the human genome?

Authors:  K Lange; M Boehnke
Journal:  Am J Hum Genet       Date:  1982-11       Impact factor: 11.025

9.  Easy calculations of lod scores and genetic risks on small computers.

Authors:  G M Lathrop; J M Lalouel
Journal:  Am J Hum Genet       Date:  1984-03       Impact factor: 11.025

Review 10.  Construction of a genetic linkage map in man using restriction fragment length polymorphisms.

Authors:  D Botstein; R L White; M Skolnick; R W Davis
Journal:  Am J Hum Genet       Date:  1980-05       Impact factor: 11.025

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  30 in total

1.  On a randomization procedure in linkage analysis.

Authors:  H Zhao; K R Merikangas; K K Kidd
Journal:  Am J Hum Genet       Date:  1999-11       Impact factor: 11.025

2.  A new locus for familial FSGS on chromosome 2p.

Authors:  Rasheed Gbadegesin; Peter Lavin; Louis Janssens; Bartlomiej Bartkowiak; Alison Homstad; Guanghong Wu; Brandy Bowling; Jason Eckel; Chris Potocky; Diana Abbott; Peter Conlon; William K Scott; David Howell; Elizabeth Hauser; Michelle P Winn
Journal:  J Am Soc Nephrol       Date:  2010-07-08       Impact factor: 10.121

3.  SimPed: a simulation program to generate haplotype and genotype data for pedigree structures.

Authors:  Suzanne M Leal; Kai Yan; Bertram Müller-Myhsok
Journal:  Hum Hered       Date:  2005-10-13       Impact factor: 0.444

4.  The power to detect genetic linkage for quantitative traits in the Utah CEPH pedigrees.

Authors:  Alka Malhotra; Kevin Cromer; Mark F Leppert; Sandra J Hasstedt
Journal:  J Hum Genet       Date:  2005-01-29       Impact factor: 3.172

5.  Extension of the SIMLA package for generating pedigrees with complex inheritance patterns: environmental covariates, gene-gene and gene-environment interaction.

Authors:  Mike Schmidt; Elizabeth R Hauser; Eden R Martin; Silke Schmidt
Journal:  Stat Appl Genet Mol Biol       Date:  2005-06-06

6.  Criteria to optimize designs for detection and estimation of linkage between marker loci from segregating populations containing several families.

Authors:  S van der Beek; J A van Arendonk
Journal:  Theor Appl Genet       Date:  1993-04       Impact factor: 5.699

7.  Sample-size guidelines for linkage analysis of a dominant locus for a quantitative trait by the method of lod scores.

Authors:  M Boehnke
Journal:  Am J Hum Genet       Date:  1990-08       Impact factor: 11.025

8.  Linkage analysis in Marfan syndrome.

Authors:  R C Schwartz; S H Blanton; C A Hyde; T R Sottile; L Hudgins; M Sarfarazi; P Tsipouras
Journal:  J Med Genet       Date:  1990-02       Impact factor: 6.318

9.  Assessing the statistical power to detect linkage in a sample of 51 bipolar affective disorder pedigrees.

Authors:  L C Lim; N Craddock; M Owen; P Sham; M M Nöthen; J Körner; M Rietschel; R Fimmer; P Propping; P McGuffin; R Murray; M Gill
Journal:  Behav Genet       Date:  1996-03       Impact factor: 2.805

10.  Limits of resolution of genetic linkage studies: implications for the positional cloning of human disease genes.

Authors:  M Boehnke
Journal:  Am J Hum Genet       Date:  1994-08       Impact factor: 11.025

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