| Literature DB >> 34631882 |
Devi Nallappan1,2, Agustine Nengsih Fauzi3, Balam Satheesh Krishna4, Basivi Praveen Kumar5, Avula Vijaya Kumar Reddy6, Tasqeeruddin Syed7, Cirandur Suresh Reddy4, Nik Soriani Yaacob3, Pasupuleti Visweswara Rao1,8,9,10.
Abstract
Studies on green biosynthesis of newly engineered nanoparticles for their prominent medicinal applications are being the torch-bearing concerns of the state-of-the-art research strategies. In this concern, we have engineered the biosynthesized Luffa acutangula silver nanoparticles of flavonoid O-glycosides in the anisotropic form isolated from aqueous leave extracts of Luffa acutangula, a popular traditional and ayurvedic plant in south-east Asian countries. These were structurally confirmed by Ultraviolet-visible (UV-Vis), Fourier transform infrared spectroscopy accessed with attenuated total reflection (FTIR-ATR) spectral analyses followed by the scanning electron microscopic (SEM) and the X-ray diffraction (XRD) crystallographic studies and found them with the face-centered cubic (fcc) structure. Medicinally, we have explored their significant antioxidant (DPPH and ABTS assays), antibacterial (disc diffusion assay on E. coli, S. aureus, B. subtilis, S. fecilis, and S. boydii), and anticancer (MTT assay on MCF-7, MDA-MB-231, U87, and DBTRG cell lines) potentialities which augmented the present investigation. The molecular docking analysis of title compounds against 3NM8 (DPPH) and 1DNU (ABTS) proteins for antioxidant activity; 5FGK (Gram-Positive Bacteria) and 1AB4 (Gram-Negative Bacteria) proteins for antibacterial activity; and 4GBD (MCF-7), 5FI2 (MDA-MB-231), 1D5R (U87), and 5TIJ (DBTRG) proteins for anticancer activity has affirmed the promising ligand-protein binding interactions among the hydroxy groups of the title compounds and aspartic acid of the concerned enzymatic proteins. The binding energy varying from -9.1645 to -7.7955 for Cosmosioside (1, Apigenin-7-glucoside) and from -9.2690 to -7.8306 for Cynaroside (2, Luteolin-7-glucoside) implies the isolated compounds as potential bioactive compounds. In addition, the performed studies like QSAR, ADMET, bioactivity properties, drug scores, and toxicity risks confirmed them as potential drug candidates and aspartic acid receptor antagonists. This research auxiliary augmented the existing array of phytological nanomedicines with new drug candidates that are credible with multiple bioactivities.Entities:
Mesh:
Substances:
Year: 2021 PMID: 34631882 PMCID: PMC8494549 DOI: 10.1155/2021/5125681
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Figure 1Potential natural FOGs (1 and 2) identified in Luffa acutangula (LA) leaves.
Figure 2Formation of silver nanoparticles using 5% of LA leaf extract.
Figure 3UV-Vis spectrum of LAAgNPs at various concentrations.
Figure 4XRD graph of synthesised LAAgNPs (5%).
Figure 5FTIR–ATR graph of synthesised LAAgNPs.
Figure 6The SEM micrograph of synthesised LAAgNPs (5%).
Figure 7The DPPH free radical scavenging activity.
Figure 8The ABTS free radical scavenging activity.
Figure 9The results of antibacterial activity with zones of inhibition.
Figure 10Different modes of antibacterial mechanisms induced by AgNPs in microbial cells.
Figure 11Cytotoxic activity of LAAgNPs against MCF-7, MDA-MB-231, U87, and DBTRG cell lines.
Potential ligand-protein molecular docking bindings of Cosmosioside (1) with identified proteins.
|
|
|
|
| Cosmosioside (1, Apigenin-7-glucoside, C21H20O10) | 3NM8 (chain A)-oxidoreductase-tyrosinase | 1DNU (chain A)-oxidoreductase-myeloperoxidase-thiocyanate complex |
|
|
|
|
| 5FGK (chain A)- | 1AB4 (chain A)- | 4GBD (chain A)–Lyase-adenosine deaminase |
|
|
|
|
| 5FI2 (chain C)- | 1D5R (chain A)- | 5TIJ (chain B)-A |
Potential ligand-protein molecular docking interactions of Cosmosioside (1) with identified proteins.
| Enzymatic protein | Cluster number | Cluster element | BE (KCal/mol) | HB | HBL atoms | HBR atoms | Binding interactions | BL (A°) | BA (°) | H.B. type |
|---|---|---|---|---|---|---|---|---|---|---|
| 3NM8 (chain A) - | 0 | 7 | -8.2618 | 3 | 2 | 3 | Ligand[O(4)-H(10)]-------ASP55(OCOH) | 2.0704 | 54.6126## | Acceptor |
| Ligand[O(4)-H(10)]-----ASP55[O(H)CO] | 2.2912 | Acceptor | ||||||||
| Ligand[C(2)-O(1)]-----------ARG209(HN) | 2.8998 | — | Donor | |||||||
|
| ||||||||||
| 1DNU (chain A) - | 30 | 7 | -7.9463 | 2 | 2 | 2 | Ligand[O(7)-H(13)]-----------ASP172(OC) | 2.4855 | — | Acceptor |
| Ligand[O(8)-H(18)]----------TYR316(OH) | 2.2322 | — | Acceptor | |||||||
|
| ||||||||||
| 5FGK (chain A) - | 0 | 0 | -9.1645 | 3 | 3 | 3 | Ligand[O(4)-H(10)]------ASP103(OCOH) | 1.9270 | — | Acceptor |
| Ligand[O(6)-H(12)]------------VAL27(OC) | 2.4636 | — | Acceptor | |||||||
| Ligand[O(8)-H(18)]-------GLU66(OCOH) | 2.0588 | — | Acceptor | |||||||
|
| ||||||||||
| 1AB4 (chain A) - | 0 | 0 | -8.2294 | 4 | 4 | 4 | Ligand[O(4)-H(10)]-------ASP87(OCOH) | 2.5627 | — | Acceptor |
| Ligand[O(7)-H(13)]-----GLN94(OCNH2) | 2.2952 | — | Acceptor | |||||||
| Ligand[O(8)-H(18)]------------PHE96(OC) | 1.9022 | — | Acceptor | |||||||
| Ligand[H(18)-O(8)]----------GLN267(HN) | 2.1500 | — | Donor | |||||||
|
| ||||||||||
| 4GBD (chain A) - | 8 | 1 | -7.7955 | 3 | 3 | 3 | Ligand[O(4)-H(10)]-------ASP36(OCOH) | 2.1348 | — | Acceptor |
| Ligand[H(13)-O(7)]---------ARG411(HN) | 2.0486 | — | Donor | |||||||
| Ligand[C(2)-O(1)]-----------ARG149(HN) | 2.5263 | — | Donor | |||||||
|
| ||||||||||
| 5FI2 (chain C) - | 0 | 0 | -8.8921 | 7 | 6 | 7 | Ligand[O(8)-H(18)]------ASP446(OCOH) | 1.8467 | — | Acceptor |
| Ligand[O(4)-H(10)]----------TYR248(OH) | 2.1513 | — | Acceptor | |||||||
| Ligand[O(6)-H(12)]----------GLU380(OH) | 1.7125 | — | Acceptor | |||||||
| Ligand[H(18)-O(8)]------ASN318(HNOC) | 2.2940 | — | Donor | |||||||
| Ligand[C(9)-O(3)-C(13)]-ASN334(HNOC) | 2.6215 | — | Donor | |||||||
| Ligand[H(11)-O(5)]----------ASN387(HN) | 2.1575 | 106.6382@ | Donor | |||||||
| Ligand[H(11)-O(5)]----------TYR413(HO) | 2.4479 | Donor | ||||||||
|
| ||||||||||
| 1D5R (chain A) - | 0 | 0 | -8.7975 | 4 | 4 | 3 | Ligand[O(4)-H(10)]------ASP324(OCOH) | 2.2363 | 102.4531$ | Acceptor |
| Ligand[O(6)-H(12)]------ASP324(OCOH) | 2.1290 | Acceptor | ||||||||
| Ligand[H(13)-O(7)]----------ARG172(HN) | 2.2084 | — | Donor | |||||||
| Ligand[H(19)-O(9)]----------ARG173(HN) | 2.1463 | — | Donor | |||||||
|
| ||||||||||
| 5TIJ (chain B) - | 5 | 7 | -7.9044 | 4 | 3 | 3 | Ligand[O(8)-H(18)]------ASP282(OCOH) | 1.7981 | — | Acceptor |
| Ligand[O(7)-H(13)]---GLU219(O(H)OC) | 2.5990 | 56.2469# | Acceptor | |||||||
| Ligand[O(7)-H(13)]-----GLU219(OCOH) | 1.9638 | Acceptor | ||||||||
| 69.7145∗ | ||||||||||
| Ligand[O(6)-H(12)]-----GLU219(OCOH) | 1.7856 | Acceptor | ||||||||
$Ligand H(10)-ASP324(OCOH)-Ligand H(12); ∗Ligand H(13)-GLU219(HOCO)- Ligand H(12); ##ASP55[OC(H)O]-Ligand H(10)-ASP55(OCOH); HBL atoms: number of hydrogen bond ligand atoms; #GLU219(HOCO)-Ligand H(13)-GLU219(O(H)OC); @ASN387(NH)-Ligand O(5)-TYR413(HO); HB: number of hydrogen bonds; HBR Atoms: number of hydrogen bond receptor atoms; BE: binding energy; BL: bond length; BA: bond angle.
Potential ligand-protein molecular docking bindings of Cynaroside (2) with identified proteins.
|
|
|
|
| Cynaroside (2, luteolin-7-glucoside), C21H20O11) | 3NM8 (chain A) - oxidoreductase - tyrosinase | 1DNU (chain A) - oxidoreductase - myeloperoxiase-thiocyanate complex |
|
|
|
|
| 5FGK (chain A) - A Transferase Enzymatic Protein - CDK8 associated CycC | 1AB4 (chain A) - A Topoisomerase Enzymatic Protein -59KDA fragment of gyrase A | 4GBD (chain A) – lyase - adenosine deaminase |
|
|
|
|
| 5FI2 (chain C) - Hydrolase Inhibitor Enzymatic Protein - GAC in complex UPGL 00009 inhibitor | 1D5R (chain A) - A Hydrolase Enzymatic Protein - PTEN tumor suppressor | 5TIJ (chain B) - A Lyase Enzymatic Protein -human enolase 2 |
Potential ligand-protein molecular docking interactions of Cynaroside (2) with identified proteins.
| Enzymatic protein | Cluster number | Cluster element | BE (KCal/mol) | HB | HBL atoms | HBR atoms | Binding interactions | BL(A°) | BA (°) | HB type |
|---|---|---|---|---|---|---|---|---|---|---|
| 3NM8 (chain A) - | 19 | 3 | -7.9386 | 2 | 2 | 2 | Ligand[O(7)-H(13)]----ASP324(OCOH) | 2.1516 | — | Acceptor |
| Ligand[C(2)-O(1)]--------ARG209(HN) | 2.3601 | — | Donor | |||||||
|
| ||||||||||
| 1DNU (chain A) - | 0 | 3 | -8.3238 | 3 | 3 | 3 | Ligand[O(10)-H(19)]---ASP324(OCOH) | 1.9449 | — | Acceptor |
| Ligand[O(7)-H(13)]---------ARG27(HN) | 2.0962 | — | Acceptor | |||||||
| Ligand[O(6)-H(12)]----------ALA24(OC) | 2.2144 | — | Acceptor | |||||||
|
| ||||||||||
| 5FGK (chain A) - | 18 | 12 | -8.8514 | 5 | 5 | 5 | Ligand[O(5)-H(11)]----ASP173(OCOH) | 2.0107 | — | Acceptor |
| Ligand[C(14)-O(4)]--------ASP173(HN) | 2.2884 | — | Donor | |||||||
| Ligand[C(10)-O(7)]----------LYS52(HN) | 2.2874 | — | Donor | |||||||
| Ligand[H(14)-O(8)]---------LYS52(HN) | 2.4930 | Donor | ||||||||
| Ligand[O(8)-H(14)]---------ASP98(OC) | 2.7157 | Acceptor | ||||||||
|
| ||||||||||
| 1AB4 (chain A) - | 1 | 3 | -8.2753 | 7 | 7 | 6 | Ligand[O(5)-H(11)]----ASP113(OCOH) | 2.0095 | 49.2269∗ | Acceptor |
| Ligand[O(7)-H(13)]- --ASP113(OCOH) | 2.6325 | Acceptor | ||||||||
| Ligand[O(4)-H(10)]----ASP115(OCOH) | 2.0341 | — | Acceptor | |||||||
| Ligand[O(10)-H(19)]-------ASP299(OC) | 2.7050 | — | Acceptor | |||||||
| Ligand[C(10)-O(7)]--------LYS270(HN) | 2.0314 | — | Donor | |||||||
| Ligand[C(6)-O(2)]---------LYS298(HN) | 2.4233 | — | Donor | |||||||
| Ligand[O(9)-H(18)]-------HSD262(OC) | 2.3361 | — | Acceptor | |||||||
|
| ||||||||||
| 4GBD (chain A) – | 4 | 4 | -7.8306 | 4 | 4 | 4 | Ligand[O(10)-H(19)]--ASP215(OCOH) | 2.1032 | — | Acceptor |
| Ligand[O(6)-H(12)]------LYS182(OC) | 2.5865 | — | Acceptor | |||||||
| Ligand[O(4)-H(10)]--------LYS184(OC) | 1.8875 | — | Acceptor | |||||||
| Ligand[H(19)-O(9)]---------ILE189(HN) | 2.2567 | — | Donor | |||||||
|
| ||||||||||
| 5FI2 (Chain C) - | 0 | 0 | -9.1290 | 5 | 5 | 5 | Ligand[O(10)-H(19)]---ASP446(OCOH) | 1.9065 | — | Acceptor |
| Ligand[C(11)-O(6)]-------ASN330(HN) | 2.0675 | — | Donor | |||||||
| Ligand[O(5)-H(11)]--------CYS462(O'C) | 2.5840 | — | Acceptor | |||||||
| Ligand[O(7)-H(13)]---------CYS462(OC) | 1.9953 | — | Acceptor | |||||||
| Ligand[O(4)-H(10)]---------SER313(OC) | 2.5769 | — | Acceptor | |||||||
|
| ||||||||||
| 1D5R (chain A) - | 0 | 0 | -9.2690 | 7 | 7 | 5 | Ligand[O(4)-H(10)]----ASP324(OCOH) | 1.9343 | 90.6238$ | Acceptor |
| Ligand[O(6)-H(12)]----ASP324(OCOH) | 1.8831 | Acceptor | ||||||||
| Ligand[C(18)-O(9)]---------LYS183(HN) | 2.4417 | 74.4086# | Donor | |||||||
| Ligand[C(17)-O(10)]--------LYS183(HN) | 2.2624 | Donor | ||||||||
| Ligand[O(10)-H(19)]--------TYR176(HN) | 2.3215 | — | Acceptor | |||||||
| Ligand[C(4)-O(8)]---------ARG173(HN) | 2.2435 | — | Donor | |||||||
| Ligand[O(7)-H(13)]--------ARG172(HN) | 2.2234 | — | Donor | |||||||
|
| ||||||||||
| 5TIJ (chain B) - | 24 | 1 | -8.7736 | 5 | 4 | 5 | Ligand[O(5)-H(11)]----ASP142(OCOH) | 1.9126 | — | Acceptor |
| Ligand[O(7)-H(13)]---------ASP142(OC) | 2.4464 | — | Acceptor | |||||||
| Ligand[C(10)-O(7)]---------ASP142(HN) | 2.1296 | 48.5632@ | Donor | |||||||
| Ligand[C(10)-O(7)]---------SER141(HN) | 2.3549 | Donor | ||||||||
| Ligand[C(14)-O(4)]---------SER432(HO) | 2.2870 | — | Donor | |||||||
Potential ligand-protein molecular docking bindings of ascorbic acid (3) with identified proteins.
|
|
|
|
| Ascorbic acid (3, hex-1-enofuranos-3-ulose, C6H8O6) | 3NM8 (chain A) - oxidoreductase - tyrosinase | 1DNU (chain A) - oxidoreductase - myeloperoxidase-thiocyanate complex |
Potential ligand-protein molecular docking interactions of ascorbic acid (3) with identified proteins.
| Enzymatic protein | Cluster number | Cluster element | BE (KCal/mol) | No. of HB | No. of HBL atoms | No. of HBR atoms | Binding interactions | BL (A°) | BA (°) | HB type |
|---|---|---|---|---|---|---|---|---|---|---|
| 3NM8 (chain A) - | 1 | 4 | -6.4837 | 3 | 3 | 3 | Ligand[O(2)-H(4)]---ASP140(C=O) | 2.1328 | — | Acceptor |
| Ligand[C-O(1)]--------LYS47(NH) | 2.8116 | — | Donor | |||||||
| Ligand[O(5)-H(3)]---PRO219(C=O) | 1.9298 | — | Acceptor | |||||||
|
| ||||||||||
| 1DNU (chain A) - | 31 | 2 | -6.6112 | 4 | 3 | 3 | Ligand[O(4)-H(6)]------ASP5(O=C) | 2.3826 | 78.7795∗ | Acceptor |
| Ligand[O(4)-H(6)]----ASP5(OCOH) | 1.9709 | Acceptor | ||||||||
| 61.7009# | ||||||||||
| Ligand[O(5)-H(7)]---ASP5(OCOH) | 1.7722 | Acceptor | ||||||||
| Ligand[H(7)-O(5)]-----ARG17(NH) | 2.7187 | — | Donor | |||||||
∗ASP5(CO)-Ligand H(6)-ASP5(OCOH); #Ligand H(6)-ASP5(OCOH)-Ligand H(7).
Potential ligand-protein molecular docking bindings of ampicillin (4) with identified proteins.
|
|
|
|
| Ampicillin (4, aminobenzylpenicillin, C16H19N3O4S) | 5FGK (chain A) - | 1AB4 (chain A) - |
Potential ligand-protein molecular docking interactions of ampicillin (4) with identified proteins.
| Enzymatic protein | Cluster number | Cluster element | BE (KCal/mol) | No. of HB | No. of HBL atoms | No. of HBR atoms | Binding interactions | BL (A°) | BA (°) | HB type |
|---|---|---|---|---|---|---|---|---|---|---|
| 5FGK (chain A) - | 5 | 0 | -8.4767 | 3 | 3 | 3 | Ligand[N(2)-H(17)]--ASP173(OCOH) | 2.1290 | — | Acceptor |
| Ligand[C(8)-O(3)]----LYS52(HNCH2) | 2.1803 | — | Donor | |||||||
| Ligand[O(1)-H(3)]--------VAL27(OC) | 2.3334 | — | Acceptor | |||||||
|
| ||||||||||
| 1AB4 (chain A) - | 1 | 4 | -7.8486 | 3 | 3 | 3 | Ligand[O(1)-H(3)]---ASP104(OCOH) | 2.1401 | — | Acceptor |
| Ligand[N(2)-H(18)]--ASP515(OCOH) | 2.4497 | — | Acceptor | |||||||
| Ligand[C(5)-O]-----------LYS129(HN) | 2.1821 | — | Donor | |||||||
Potential ligand-protein molecular docking bindings of tamoxifen (5) with identified proteins.
|
|
|
|
| Tamoxifen (5, 1- | 4GBD (chain A) – lyase - adenosine deaminase | 5FI2 (chain C) - |
Potential ligand-protein molecular docking interactions of tamoxifen (5) with identified proteins.
| Enzymatic protein | Cluster number | Cluster element | BE (KCal/mol) | HB | HBL atoms | HBR atoms | Binding interactions | BL (A°) | BA (°) | HB type |
|---|---|---|---|---|---|---|---|---|---|---|
| 4GBD (chain A) - | 0 | 3 | -7.7235 | 3 | 1 | 3 | Ligand[C-N]-------ASP316(OCOH) | 4.2864 | 39.9133∗ | Acceptor |
| Ligand[C-N]----------ASN314(O=C) | 4.4192 | Acceptor | ||||||||
| 40.7597$ | ||||||||||
| Ligand[C-N]----------GLU282(OCOH) | 3.2491 | Acceptor | ||||||||
|
| ||||||||||
| 5FI2 (Chain C) - | 4 | 0 | -7.5313 | 2 | 2 | 2 | Ligand[C(2)Ph-O]----------ASP466(HN) | 4.0253 | 104. 5635# | Donor |
| Ligand[C(2)Ph-O]---------ASN318(HN) | 3.5771 | Donor | ||||||||
∗ASP316(HOCO)-Ligand[CN]-ASN314(OC); $ASN314(CO)-Ligand[CN]-GLU282(OCOH); #ASP466(NH)-Ligand[O]-ASN318(HN).
Potential ligand-protein molecular docking bindings of gefitinib (6) with identified proteins.
|
|
|
|
| Gefitinib (6, N-(3-chloro-4-fluorophenyl)-7-methoxy-6-(3-morpholinopropoxy) quinazolin-4-amine, C22H24ClFN4O3) | 1D5R (chain A) - | 5TIJ (chain B) - A |
Potential ligand-protein molecular docking interactions of gefitinib (6) with identified proteins.
| Enzymatic protein | Cluster number | Cluster element | BE (KCal/mol) | HB | HBL atoms | HBR atoms | Binding interactions | BL (A°) | BA (°) | HB type |
|---|---|---|---|---|---|---|---|---|---|---|
| 1D5R (chain A) - | 0 | 0 | -8.0338 | 5 | 3 | 4 | Ligand[N(2)-H(3)]------ASP324(OCOH) | 2.3863 | 54.6314$ | Acceptor |
| Ligand[N(2)-H(3)]------ASP324(OCOH) | 2.1188 | Acceptor | ||||||||
| Ligand[C(5)-O(2)]-------ARG173(HN=C) | 2.2728 | 71.0798# | Donor | |||||||
| Ligand[C(4)-O]---------ARG173(HN=C) | 2.3931 | Donor | ||||||||
| 50.4066∗ | ||||||||||
| Ligand[C(4)-O]--------ARG173(HN-CH) | 2.8653 | Donor | ||||||||
|
| ||||||||||
| 5TIJ (chain B) - | 13 | 3 | -7.8985 | 2 | 1 | 2 | Ligand[C(12)-O(1)]----------ASP142(HN) | 2.4308 | 52.5638$ | Donor |
| Ligand[C(12)-O(1)]----------SER141(HN) | 2.4781 | Donor | ||||||||
$ASP324(HOCO)-Ligand [H(3)]-ASP324(O(H)OC); ∗ARG173(C = HN)-Ligand[O]-ARG173(HN=CH); #Ligand[O(2)]-ARG173(HN=C)-Ligand[O]; ASP142(NH)-Ligand[O(1)]-SER141(HN).
ADMET properties the compounds 1-6.
| Compounds |
|
|
|
| Human intestinal absorption (HIA, %)e | Toxicityf |
|---|---|---|---|---|---|---|
| Apigenin-7-glucoside (1) | 0.0373 | 7.2167 | 73.4332 | 0.6424 | 47.1059 | Negative |
| Luteolin-7-glucoside (2) | 0.0336 | 4.8722 | 73.2796 | 0.7567 | 25.1651 | Negative |
| Ampicillin (3) | 0.0588 | 0.6307 | 36.1547 | 0.9376 | 81.4785 | Negative |
| Ascorbic acid (4) | 0.1173 | 2.4836 | 5.3035 | 0.8819 | 33.1572 | Negative |
| Gefitinib (5) | 0.0476 | 54.1474 | 80.7309 | 0.07737 | 96.6375 | Negative |
| Tamoxifen (6) | 14.1639 | 49.5448 | 94.7448 | 69.8462 | 100 | Negative |
aBlood − brain barrier (BBB) penetration = [brain]/[blood]; bCaco-2 cells are derived from human colon adenocarcinoma and possess multiple drug transport pathways through intestinal epithelium; c% of drug binds to plasma protein; dMDCK cell system used as tool for rapid permeability screening; ehuman intestinal absorption is the sum of bioavailability and absorption evaluated from ratio of excretion or cumulative excretion in urine, bile, and feces; fin vitro Ames test by metabolic and nonmetabolic activated TA100 and TA1535 strains collected from rat liver homogenate.
QSAR properties of the compounds 1-6.
| Entry | Lipinski parameters | Veber parameters | Other parameters | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MW | HB Don | HB | logP (o/w) | MR | Lip. Vio. | TPSA | No. of | Veb. | No. of H | V. Volume |
| Solubility | |
| Apigenin-7-glucoside (1) | 432.38 | 10 | 6 | 0.68 | 107.46 | 0 | 170.05 | 4 | 0 | 20 | 356.17 | 1.642 | -2.74 |
| Luteolin-7-glucoside (2) | 448.38 | 11 | 7 | 0.19 | 109.27 | 0 | 190.28 | 4 | 0 | 20 | 364.19 | 1.713 | -2.45 |
| Ampicillin (3) | 349.41 | 7 | 4 | -0.87 | 89.37 | 0 | 112.73 | 4 | 0 | 19 | 298.87 | 1.453 | -1.57 |
| Ascorbic acid (4) | 176.12 | 6 | 4 | -1.40 | 36.61 | 0 | 107.22 | 2 | 0 | 8 | 139.71 | 1.954 | -0.35 |
| Gefitinib (5) | 446.91 | 7 | 1 | 4.19 | 118.38 | 0 | 68.75 | 8 | 0 | 24 | 385.07 | 1.322 | -5.06 |
| Tamoxifen (6) | 371.52 | 2 | 0 | 6.06 | 119.87 | 0 | 12.47 | 8 | 0 | 29 | 376.13 | 1.042 | -4.40 |
MW: molecular weight; HB Don: hydrogen bond donors; HB Acc: hydrogen bond acceptors; logP: octanol to water partition coefficient; MR: molecular refractivity (cm3/mol); Lip Vio: Lipinski violations; TPSA: total polar surface area; No. of RB: number of rotatable bonds; Veb Vio: Veber violations; No. of “H”: number of hydrophobic atoms; V. Volume: Van der Waals volume; ρ: density (gm/cc).
Bioactivity scores, drug properties, and toxicity risks of the compounds 1-6.
| Compounds | Structure | Bioactivity | Drug properties | ||||||
|---|---|---|---|---|---|---|---|---|---|
| GPCRL | ICM | KI | NRL | PI | EI | Drug-likeness | Toxicity risks | ||
| Apigenin-7-glucoside (1) |
| 0.10 | -0.01 | 0.14 | 0.31 | 0.02 | 0.43 | 2.29 | 0.44 |
| Luteolin-7-glucoside (2) |
| 0.09 | -0.02 | 0.15 | 0.27 | -0.01 | 0.42 | 1.79 | 0.45 |
| Ampicillin (3) |
| 0.04 | -0.47 | -0.71 | -0.61 | 0.87 | 0.25 | 10.72 | 0.91 |
| Ascorbic acid (4) |
| -0.53 | -0.24 | -1.09 | -1.01 | -0.81 | 0.20 | 0.02 | 0.74 |
| Gefitinib (5) |
| 0.12 | -0.04 | 0.66 | -0.21 | 0.30 | 0.03 | -2.62 | 0.28 |
| Tamoxifen (6) |
| 0.30 | 0.002 | -0.01 | 0.57 | 0.04 | 0.32 | 6.3 | 0.35 |
GPCRL: G protein-coupled receptor ligand; ICM: ion channel modulator; KI: kinase inhibitor; NRL: nuclear receptor ligand; PI: protease inhibitor; EI: enzyme inhibitor.