Literature DB >> 15288243

Integrating virtual screening in lead discovery.

Tudor I Oprea1, Hans Matter.   

Abstract

Target- and ligand-based virtual screening have emerged as resource-saving techniques that have been successfully applied to identify novel chemotypes in biologically active molecules. Eight confirmed virtual screening hits have recently been described and are discussed in this review, with focus on the workflow. These are then evaluated in the light of pharmacokinetics prediction (e.g. Caco-2 permeability, cytochrome P450 inhibition and hERG binding). We anticipate problems for five of these hits (e.g. cardiac toxicity), which warrant further experiments. Future challenges include dynamic tautomer/protonation treatment for both ligands and targets and improved pre- and post- virtual screening filters.

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Year:  2004        PMID: 15288243     DOI: 10.1016/j.cbpa.2004.06.008

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  44 in total

Review 1.  Exploring biology with small organic molecules.

Authors:  Brent R Stockwell
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

Review 2.  Molecular similarity and diversity in chemoinformatics: from theory to applications.

Authors:  Ana G Maldonado; J P Doucet; Michel Petitjean; Bo-Tao Fan
Journal:  Mol Divers       Date:  2006-02       Impact factor: 2.943

Review 3.  Computer-aided drug discovery and development (CADDD): in silico-chemico-biological approach.

Authors:  I M Kapetanovic
Journal:  Chem Biol Interact       Date:  2006-12-16       Impact factor: 5.192

4.  A combined ligand-based and target-based drug design approach for G-protein coupled receptors: application to salvinorin A, a selective kappa opioid receptor agonist.

Authors:  Nidhi Singh; Gwénaël Chevé; David M Ferguson; Christopher R McCurdy
Journal:  J Comput Aided Mol Des       Date:  2006-09-29       Impact factor: 3.686

Review 5.  Ligand discovery and virtual screening using the program LIDAEUS.

Authors:  P Taylor; E Blackburn; Y G Sheng; S Harding; K-Y Hsin; D Kan; S Shave; M D Walkinshaw
Journal:  Br J Pharmacol       Date:  2007-11-26       Impact factor: 8.739

Review 6.  In silico pharmacology for drug discovery: methods for virtual ligand screening and profiling.

Authors:  S Ekins; J Mestres; B Testa
Journal:  Br J Pharmacol       Date:  2007-06-04       Impact factor: 8.739

7.  Systems chemical biology.

Authors:  Tudor I Oprea; Alexander Tropsha; Jean-Loup Faulon; Mark D Rintoul
Journal:  Nat Chem Biol       Date:  2007-08       Impact factor: 15.040

8.  Virtual screening applications: a study of ligand-based methods and different structure representations in four different scenarios.

Authors:  Dimitar P Hristozov; Tudor I Oprea; Johann Gasteiger
Journal:  J Comput Aided Mol Des       Date:  2007-11-16       Impact factor: 3.686

9.  CONFIRM: connecting fragments found in receptor molecules.

Authors:  David C Thompson; R Aldrin Denny; Ramaswamy Nilakantan; Christine Humblet; Diane Joseph-McCarthy; Eric Feyfant
Journal:  J Comput Aided Mol Des       Date:  2008-07-09       Impact factor: 3.686

10.  Analysis and use of fragment-occurrence data in similarity-based virtual screening.

Authors:  Shereena M Arif; John D Holliday; Peter Willett
Journal:  J Comput Aided Mol Des       Date:  2009-06-18       Impact factor: 3.686

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