Literature DB >> 34606991

Strength, deformability and toughness of uncrosslinked fibrin fibers from theoretical reconstruction of stress-strain curves.

Farkhad Maksudov1, Ali Daraei2, Anuj Sesha1, Kenneth A Marx1, Martin Guthold3, Valeri Barsegov4.   

Abstract

Structural mechanisms underlying the mechanical properties of fibrin fibers are elusive. We combined tensile testing of uncrosslinked fibrin polymers in vitro and in silico to explore their material properties. The experimental stress (σ) - strain (ε) curves for fibrin fibers are characterized by elastic deformations with a weaker elastic response for ε<160% due to unraveling of αC tethers and straightening of fibrin protofibrils, and a stronger response for ε>160% owing to unfolding of the coiled coils and γ nodules in fibrin monomers. Fiber rupture for strains ε>212% is due to dissociation of the knob-hole bonds and rupture of D:D interfaces. We developed the Fluctuating Bilinear Spring model to interpret the σ-ε profiles in terms of the free energy for protofibril alignment ΔG0 = 10.1-11.5 kBT, Young's moduli for protofibril alignment Yu = 1.9-3.2 MPa and stretching Ya = 5.7-9.7 MPa, strain scale ε˜≈ 12-40% for fiber rupture, and protofibril cooperativity m= 3.6-8. We applied the model to characterize the fiber strength σcr≈ 12-13 MPa, deformability εcr≈ 222%, and rupture toughness U≈ 9 MJ/m3, and to resolve thermodynamic state functions, 96.9 GJ/mol entropy change for protofibril alignment (at room temperature) and 113.6 GJ/mol enthalpy change for protofibril stretching, which add up to 210.5 GJ/mol free-energy change. Fiber elongation is associated with protofibril dehydration and sliding mechanism to create an ordered protofibril array. Fibrin fibers behave like a hydrogel; protofibril dehydration and water expulsion account for ∼94-98% of the total free-energy changes for fiber elongation and rupture. STATEMENT OF SIGNIFICANCE: Structural mechanisms underlying the mechanical properties of fibrin fibers, major components of blood clots and obstructive thrombi, are elusive. We performed tensile testing of uncrosslinked fibrin polymers in vitro and in silico to explore their material properties. Fluctuating Bilinear Spring theory was developed to interpret the stress-strain profiles in terms of the energy for protofibril alignment, elastic moduli for protofibril alignment and stretching, and strain scale for fiber rupture, and to probe the limits of fiber strength, extensibility and toughness. Fibrin fibers behave like a hydrogel. Fiber elongation is defined by the protofibril dehydration and sliding. Structural rearrangements in water matrix control fiber elasticity. These results contribute to fundamental understanding of blood clot breakage that underlies thrombotic embolization.
Copyright © 2021 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Fluctuating Bilinear Spring model; Rupture toughness; Stress–strain spectra; Uncrosslinked fibrin fibers

Mesh:

Substances:

Year:  2021        PMID: 34606991      PMCID: PMC8627496          DOI: 10.1016/j.actbio.2021.09.050

Source DB:  PubMed          Journal:  Acta Biomater        ISSN: 1742-7061            Impact factor:   8.947


  79 in total

1.  Mechanism of fibrin(ogen) forced unfolding.

Authors:  Artem Zhmurov; Andre E X Brown; Rustem I Litvinov; Ruxandra I Dima; John W Weisel; Valeri Barsegov
Journal:  Structure       Date:  2011-11-09       Impact factor: 5.006

2.  Stiffening of individual fibrin fibers equitably distributes strain and strengthens networks.

Authors:  Nathan E Hudson; John R Houser; E Timothy O'Brien; Russell M Taylor; Richard Superfine; Susan T Lord; Michael R Falvo
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

3.  Generation of random numbers on graphics processors: forced indentation in silico of the bacteriophage HK97.

Authors:  A Zhmurov; K Rybnikov; Y Kholodov; V Barsegov
Journal:  J Phys Chem B       Date:  2010-12-31       Impact factor: 2.991

4.  Pathways and kinetic barriers in mechanical unfolding and refolding of RNA and proteins.

Authors:  Changbong Hyeon; Ruxandra I Dima; D Thirumalai
Journal:  Structure       Date:  2006-11       Impact factor: 5.006

5.  Submillisecond elastic recoil reveals molecular origins of fibrin fiber mechanics.

Authors:  Nathan E Hudson; Feng Ding; Igal Bucay; E Timothy O'Brien; Oleg V Gorkun; Richard Superfine; Susan T Lord; Nikolay V Dokholyan; Michael R Falvo
Journal:  Biophys J       Date:  2013-06-18       Impact factor: 4.033

6.  Biomechanics in hemostasis and thrombosis.

Authors:  J W Weisel
Journal:  J Thromb Haemost       Date:  2010-02-11       Impact factor: 5.824

7.  A two-step fibrinogen--fibrin transition in blood coagulation.

Authors:  B Blombäck; B Hessel; D Hogg; L Therkildsen
Journal:  Nature       Date:  1978-10-12       Impact factor: 49.962

8.  Severely impaired polymerization of recombinant fibrinogen gamma-364 Asp --> His, the substitution discovered in a heterozygous individual.

Authors:  N Okumura; O V Gorkun; S T Lord
Journal:  J Biol Chem       Date:  1997-11-21       Impact factor: 5.157

9.  Recombinant BbetaArg14His fibrinogen implies participation of N-terminus of Bbeta chain in desA fibrin polymerization.

Authors:  Jennifer L Moen; Oleg V Gorkun; John W Weisel; Susan T Lord
Journal:  Blood       Date:  2003-06-12       Impact factor: 22.113

Review 10.  Fibrin clot structure and function: a role in the pathophysiology of arterial and venous thromboembolic diseases.

Authors:  Anetta Undas; Robert A S Ariëns
Journal:  Arterioscler Thromb Vasc Biol       Date:  2011-08-11       Impact factor: 8.311

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  2 in total

1.  Fibrin protofibril packing and clot stability are enhanced by extended knob-hole interactions and catch-slip bonds.

Authors:  Nathan L Asquith; Cédric Duval; Artem Zhmurov; Stephen R Baker; Helen R McPherson; Marco M Domingues; Simon D A Connell; Valeri Barsegov; Robert A S Ariëns
Journal:  Blood Adv       Date:  2022-07-12

Review 2.  Advances in Fibrin-Based Materials in Wound Repair: A Review.

Authors:  Ilker S Bayer
Journal:  Molecules       Date:  2022-07-14       Impact factor: 4.927

  2 in total

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