| Literature DB >> 34602085 |
Parth A Patel1, Tae Jin Lee1, Sai Karthik Kodeboyina1,2, Garrett Jones1, Kathryn Bollinger3, Lane Ulrich3, David Bogorad3, Amy Estes3, Wenbo Zhi1, Shruti Sharma1,3, Ashok Sharma4,5,6.
Abstract
BACKGROUND: Evidence suggests that proteins related to lipid metabolism, such as apolipoproteins, play an important role in the maintenance of normal vision. While several members of the apolipoprotein family are abundant in human aqueous humor (AH), their study remains difficult due to the AH's small volume, low protein concentration, and the invasive nature of sample collection. In this study, we report the use of Liquid Chromatography Tandem Mass Spectrometry (LC-MS/MS) to discover associations between AH apolipoproteins and race, gender, and ocular structure in patients with and without primary open angle glaucoma (POAG).Entities:
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Year: 2021 PMID: 34602085 PMCID: PMC8487476 DOI: 10.1186/s12944-021-01555-0
Source DB: PubMed Journal: Lipids Health Dis ISSN: 1476-511X Impact factor: 3.876
Demographic information of subjects
| Demographic Characteristic | Cataract | POAG | |
|---|---|---|---|
| Age (years, mean ± SD) | 67.65 ± 8.91 | 68.79 ± 10.79 | 0.43a |
| Gender (F/M) | 100/58 | 43/30 | 0.62b |
| Race (African Americans/Caucasians) | 95/63 | 44/29 | 1b |
atwo-sample t-test
bchi-square test
Fig. 1Levels of the ten apolipoproteins detected in 231 human aqueous humor samples
Levels of apolipoproteins in human aqueous humor
| Gene Symbol | Description | Mean PSM Value (± SD) | Detected in Proportion of Samples (%) |
|---|---|---|---|
| APOA1 | Apolipoprotein A-I | 102.88 ± 44.25 | 100 |
| APOH | Beta-2-glycoprotein 1 | 61.44 ± 21.30 | 100 |
| APOA4 | Apolipoprotein A-IV | 34.88 ± 23.25 | 100 |
| APOE | Apolipoprotein E | 28.82 ± 11.41 | 100 |
| APOA2 | Apolipoprotein A-II | 26.36 ± 14.09 | 100 |
| APOD | Apolipoprotein D | 10.62 ± 5.10 | 100 |
| APOC3 | Apolipoprotein C-III | 3.63 ± 2.80 | 57.14 |
| APOF | Apolipoprotein F | 1.29 ± 0.51 | 7.36 |
| APOB | Apolipoprotein B-100 | 1.23 ± 0.53 | 8.23 |
| APOL1 | Apolipoprotein L1 | 1.05 ± 0.1 | 5.63 |
| APOA5 | Apolipoprotein A-V | ND | 0 |
| APOC1 | Apolipoprotein C-I | ND | 0 |
| APOC2 | Apolipoprotein C-II | ND | 0 |
| APOC4 | Apolipoprotein C-IV | ND | 0 |
| APOL2 | Apolipoprotein L-II | ND | 0 |
| APOL3 | Apolipoprotein L-III | ND | 0 |
| APOL4 | Apolipoprotein L-IV | ND | 0 |
| APOL5 | Apolipoprotein L-V | ND | 0 |
| APOL6 | Apolipoprotein L-VI | ND | 0 |
| APOM | Apolipoprotein M | ND | 0 |
| APOO | Apolipoprotein O | ND | 0 |
ND Not Detected
Fig. 2Levels of three apolipoproteins were significantly increased in subjects with primary open angle glaucoma (POAG) compared to subjects with cataracts alone, the controls (C). The boxplots depict the distribution of protein levels in each group. Peptide spectrum match (PSM) values were used as semi-quantitative measurement of protein levels. The raw PSM values were log2 transformed to achieve a normal distribution
Race and sex specific changes in the levels of apolipoproteins in POAG subjects
| APOA1 | APOA2 | APOA4 | APOC3 | APOD | APOE | APOH | ||
|---|---|---|---|---|---|---|---|---|
| (Mean PSM ± SD) | (Mean PSM ± SD) | (Mean PSM ± SD) | (Mean PSM ± SD) | (Mean PSM ± SD) | (Mean PSM ± SD) | (Mean PSM ± SD) | ||
| Overall | Cataract | 97.29 ± 39.78 | 25.44 ± 12.16 | 33.94 ± 23.69 | 3.3 ± 2.79 | 10.09 ± 4.74 | 29.15 ± 10.79 | 62.39 ± 21.26 |
| POAG | 28.34 ± 17.49 | 36.91 ± 22.31 | 28.08 ± 12.68 | 59.4 ± 21.4 | ||||
| Male | Cataract | 111.95 ± 39.55 | 29.03 ± 14.01 | 42.26 ± 23.82 | 3.79 ± 2.78 | 10.14 ± 3.96 | 28.32 ± 9.69 | 67.47 ± 21.46 |
| POAG | 107.84 ± 44.59 | 26.64 ± 11.7 | 38.47 ± 20.76 | 3.96 ± 2.49 | 10.9 ± 5.11 | 26.69 ± 10.23 | 58.3 ± 23.67 | |
| Female | Cataract | 88.79 ± 37.56 | 23.36 ± 10.46 | 29.11 ± 22.34 | 2.97 ± 2.77 | 10.07 ± 5.16 | 29.64 ± 11.4 | 59.44 ± 20.68 |
| POAG | 29.05 ± 14.18 | 60.16 ± 19.93 | ||||||
| Caucasian | Cataract | 113.2 ± 36.86 | 30.57 ± 11.98 | 42.15 ± 23.49 | 3.01 ± 2.3 | 10.16 ± 4.74 | 30.75 ± 11.32 | 71.39 ± 20.65 |
| POAG | 112.58 ± 43.7 | 27.75 ± 11.8 | 39.24 ± 25.54 | 3.92 ± 2.15 | 10.63 ± 4.79 | |||
| African American | Cataract | 86.74 ± 38.27 | 22.04 ± 11.08 | 28.49 ± 22.32 | 3.44 ± 3.01 | 10.05 ± 4.77 | 28.09 ± 10.35 | 56.42 ± 19.58 |
| POAG | 4.36 ± 3.08 | 30.1 ± 14.32 | 61.11 ± 19.56 |
Fig. 3Levels of five apolipoproteins were significantly increased in female subjects with primary open angle glaucoma (G) compared to subjects with cataracts alone, the controls (C). No significant alterations in apolipoproteins were detected in male subjects. The boxplots depict the distribution of protein levels in each group
Fig. 4Levels of four apolipoproteins were significantly increased in African American subjects with primary open angle glaucoma (G) compared to subjects with cataracts alone, the controls (C). Levels of two apolipoproteins were significantly decreased in Caucasian subjects with primary open angle glaucoma compared to subjects with cataracts alone. The boxplots depict the distribution of protein levels in each group
Apolipoproteins significantly correlated with clinical parameters
| Proteins | Clinical Variables | Overall | Cataract | POAG | |||
|---|---|---|---|---|---|---|---|
| Corr. | Corr. | Corr. | |||||
| APOC3 | RNFL avg. thickness | −0.25 | 0.01* | −0.25 | 0.06 | −0.22 | 0.20 |
| APOD | RNFL avg. thickness | −0.31 | < 0.01* | 0.00 | 0.99 | −0.44 | < 0.01* |
| APOA1 | Cup Shape Measure | 0.00 | 0.98 | 0.19 | 0.09 | − 0.51 | < 0.01* |
| APOA2 | Cup Shape Measure | −0.03 | 0.74 | 0.15 | 0.18 | −0.49 | 0.01* |
| APOC3 | Cup Shape Measure | 0.37 | 0.01* | 0.39 | 0.01* | 0.39 | 0.17 |
| APOH | Cup Shape Measure | −0.07 | 0.45 | 0.18 | 0.10 | −0.61 | < 0.01* |
| APOC3 | Rim Volume (mm2) | −0.29 | 0.02* | −0.25 | 0.12 | −0.27 | 0.24 |
| APOE | Rim Volume (mm2) | 0.27 | < 0.01* | 0.36 | < 0.01* | 0.17 | 0.31 |
| APOE | Cup to Disc Area ratio | −0.19 | 0.04* | −0.32 | < 0.01* | − 0.08 | 0.63 |
| APOH | Cup to Disc Area ratio | −0.21 | 0.02* | −0.03 | 0.77 | −0.37 | 0.02* |
Corr. Correlation coefficient