Literature DB >> 31209382

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.

Hod Dana1,2, Yi Sun1,3, Boaz Mohar1, Brad K Hulse1, Aaron M Kerlin1,4, Jeremy P Hasseman1, Getahun Tsegaye1, Arthur Tsang1, Allan Wong1, Ronak Patel1, John J Macklin1, Yang Chen5, Arthur Konnerth5, Vivek Jayaraman6, Loren L Looger7, Eric R Schreiter1, Karel Svoboda8, Douglas S Kim1,9.   

Abstract

Calcium imaging with genetically encoded calcium indicators (GECIs) is routinely used to measure neural activity in intact nervous systems. GECIs are frequently used in one of two different modes: to track activity in large populations of neuronal cell bodies, or to follow dynamics in subcellular compartments such as axons, dendrites and individual synaptic compartments. Despite major advances, calcium imaging is still limited by the biophysical properties of existing GECIs, including affinity, signal-to-noise ratio, rise and decay kinetics and dynamic range. Using structure-guided mutagenesis and neuron-based screening, we optimized the green fluorescent protein-based GECI GCaMP6 for different modes of in vivo imaging. The resulting jGCaMP7 sensors provide improved detection of individual spikes (jGCaMP7s,f), imaging in neurites and neuropil (jGCaMP7b), and may allow tracking larger populations of neurons using two-photon (jGCaMP7s,f) or wide-field (jGCaMP7c) imaging.

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Year:  2019        PMID: 31209382     DOI: 10.1038/s41592-019-0435-6

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  229 in total

1.  Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator.

Authors:  Or A Shemesh; Changyang Linghu; Kiryl D Piatkevich; Daniel Goodwin; Orhan Tunc Celiker; Howard J Gritton; Michael F Romano; Ruixuan Gao; Chih-Chieh Jay Yu; Hua-An Tseng; Seth Bensussen; Sujatha Narayan; Chao-Tsung Yang; Limor Freifeld; Cody A Siciliano; Ishan Gupta; Joyce Wang; Nikita Pak; Young-Gyu Yoon; Jeremy F P Ullmann; Burcu Guner-Ataman; Habiba Noamany; Zoe R Sheinkopf; Won Min Park; Shoh Asano; Amy E Keating; James S Trimmer; Jacob Reimer; Andreas S Tolias; Mark F Bear; Kay M Tye; Xue Han; Misha B Ahrens; Edward S Boyden
Journal:  Neuron       Date:  2020-06-26       Impact factor: 17.173

Review 2.  Fluorescent Biosensors for Neuronal Metabolism and the Challenges of Quantitation.

Authors:  Dorothy Koveal; Carlos Manlio Díaz-García; Gary Yellen
Journal:  Curr Opin Neurobiol       Date:  2020-06-16       Impact factor: 6.627

3.  Neural and behavioral control in Caenorhabditis elegans by a yellow-light-activatable caged compound.

Authors:  Hironori Takahashi; Mako Kamiya; Minoru Kawatani; Keitaro Umezawa; Yoshiaki Ukita; Shinsuke Niwa; Toshiyuki Oda; Yasuteru Urano
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-09       Impact factor: 11.205

4.  High throughput instrument to screen fluorescent proteins under two-photon excitation.

Authors:  Rosana S Molina; Jonathan King; Jacob Franklin; Nathan Clack; Christopher McRaven; Vasily Goncharov; Daniel Flickinger; Karel Svoboda; Mikhail Drobizhev; Thomas E Hughes
Journal:  Biomed Opt Express       Date:  2020-11-17       Impact factor: 3.732

5.  Advances in Confocal Microscopy and Selected Applications.

Authors:  W Matt Reilly; Christopher J Obara
Journal:  Methods Mol Biol       Date:  2021

6.  Transcriptional readout of neuronal activity via an engineered Ca2+-activated protease.

Authors:  Mateo I Sanchez; Quynh-Anh Nguyen; Wenjing Wang; Ivan Soltesz; Alice Y Ting
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-15       Impact factor: 11.205

7.  Characterizing Cortex-Wide Dynamics with Wide-Field Calcium Imaging.

Authors:  Chi Ren; Takaki Komiyama
Journal:  J Neurosci       Date:  2021-04-23       Impact factor: 6.167

8.  Dorsal Raphe Dopamine Neurons Signal Motivational Salience Dependent on Internal State, Expectation, and Behavioral Context.

Authors:  Jounhong Ryan Cho; Xinhong Chen; Anat Kahan; J Elliott Robinson; Daniel A Wagenaar; Viviana Gradinaru
Journal:  J Neurosci       Date:  2021-02-09       Impact factor: 6.167

9.  In vivo Calcium Imaging of Mouse Geniculate Ganglion Neuron Responses to Taste Stimuli.

Authors:  Bryan E Fowler; Lindsey J Macpherson
Journal:  J Vis Exp       Date:  2021-02-11       Impact factor: 1.355

10.  Chemosensory signal transduction in Caenorhabditis elegans.

Authors:  Denise M Ferkey; Piali Sengupta; Noelle D L'Etoile
Journal:  Genetics       Date:  2021-03-31       Impact factor: 4.562

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