Literature DB >> 33828274

Directed evolution in mammalian cells.

Samuel J Hendel1, Matthew D Shoulders2.   

Abstract

Directed evolution experiments are typically carried out using in vitro systems, bacteria, or yeast-even when the goal is to probe or modulate mammalian biology. Performing directed evolution in systems that do not match the intended mammalian environment severely constrains the scope and functionality of the targets that can be evolved. We review new platforms that are now making it possible to use the mammalian cell itself as the setting for directed evolution and present an overview of frontier challenges and high-impact targets for this approach.

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Year:  2021        PMID: 33828274      PMCID: PMC8063495          DOI: 10.1038/s41592-021-01090-x

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  94 in total

1.  Selection of antibodies for intracellular function using a two-hybrid in vivo system.

Authors:  M Visintin; E Tse; H Axelson; T H Rabbitts; A Cattaneo
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-12       Impact factor: 11.205

2.  Generating mutant libraries using error-prone PCR.

Authors:  Patrick C Cirino; Kimberly M Mayer; Daisuke Umeno
Journal:  Methods Mol Biol       Date:  2003

3.  Directed evolution of ligand dependence: small-molecule-activated protein splicing.

Authors:  Allen R Buskirk; Yi-Ching Ong; Zev J Gartner; David R Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-09       Impact factor: 11.205

4.  Random mutagenesis using a mutator strain.

Authors:  Ghazala Muteeb; Ranjan Sen
Journal:  Methods Mol Biol       Date:  2010

5.  Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic Chromophore.

Authors:  Lukas Herwig; Austin J Rice; Claire N Bedbrook; Ruijie K Zhang; Antti Lignell; Jackson K B Cahn; Hans Renata; Sheel C Dodani; Inha Cho; Long Cai; Viviana Gradinaru; Frances H Arnold
Journal:  Cell Chem Biol       Date:  2017-03-02       Impact factor: 8.116

6.  Evolving the lock to fit the key to create a family of G protein-coupled receptors potently activated by an inert ligand.

Authors:  Blaine N Armbruster; Xiang Li; Mark H Pausch; Stefan Herlitze; Bryan L Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-02       Impact factor: 11.205

7.  Evolution. Systematic humanization of yeast genes reveals conserved functions and genetic modularity.

Authors:  Aashiq H Kachroo; Jon M Laurent; Christopher M Yellman; Austin G Meyer; Claus O Wilke; Edward M Marcotte
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

8.  Directed evolution of a small-molecule-triggered intein with improved splicing properties in mammalian cells.

Authors:  Sun H Peck; Irwin Chen; David R Liu
Journal:  Chem Biol       Date:  2011-05-27

Review 9.  Directed evolution: selection of the host organism.

Authors:  Azadeh Pourmir; Tyler W Johannes
Journal:  Comput Struct Biotechnol J       Date:  2012-10-27       Impact factor: 7.271

10.  Genetically encoded protein sulfation in mammalian cells.

Authors:  James S Italia; Jennifer C Peeler; Christen M Hillenbrand; Christopher Latour; Eranthie Weerapana; Abhishek Chatterjee
Journal:  Nat Chem Biol       Date:  2020-03-16       Impact factor: 15.040

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  6 in total

1.  Scalable fabrication, compartmentalization and applications of living microtissues.

Authors:  Maik Schot; Nuno Araújo-Gomes; Bas van Loo; Tom Kamperman; Jeroen Leijten
Journal:  Bioact Mater       Date:  2022-04-27

Review 2.  Methods for the directed evolution of biomolecular interactions.

Authors:  Victoria Cochran Xie; Matthew J Styles; Bryan C Dickinson
Journal:  Trends Biochem Sci       Date:  2022-05       Impact factor: 14.264

Review 3.  The design and evolution of fluorescent protein-based sensors for monoatomic ions in biology.

Authors:  Kiheon Baek; Ke Ji; Weicheng Peng; Sureshee M Liyanaarachchi; Sheel C Dodani
Journal:  Protein Eng Des Sel       Date:  2021-02-15       Impact factor: 1.952

4.  A System for the Evolution of Protein-Protein Interaction Inducers.

Authors:  Jeffrey A Dewey; Saara-Anne Azizi; Vivian Lu; Bryan C Dickinson
Journal:  ACS Synth Biol       Date:  2021-07-28       Impact factor: 5.249

5.  Rapid directed molecular evolution of fluorescent proteins in mammalian cells.

Authors:  Siranush Babakhanova; Erica E Jung; Kazuhiko Namikawa; Hanbin Zhang; Yangdong Wang; Oksana M Subach; Dmitry A Korzhenevskiy; Tatiana V Rakitina; Xian Xiao; Wenjing Wang; Jing Shi; Mikhail Drobizhev; Demian Park; Lea Eisenhard; Hongyun Tang; Reinhard W Köster; Fedor V Subach; Edward S Boyden; Kiryl D Piatkevich
Journal:  Protein Sci       Date:  2021-12-30       Impact factor: 6.725

6.  Synthetic evolution of herbicide resistance using a T7 RNAP-based random DNA base editor.

Authors:  Haroon Butt; Jose Luis Moreno Ramirez; Magdy Mahfouz
Journal:  Life Sci Alliance       Date:  2022-09-28
  6 in total

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