| Literature DB >> 34573402 |
Claire D Kim1, Harini V Gudiseva2, Brendan McGeehan2, Ebenezer Daniel2, Gui Shuang Ying2, Venkata R M Chavali2, Joan M O'Brien2.
Abstract
We investigated the association of the single nucleotide polymorphism (SNP) rs112369934 near the TRIM66 gene with qualitative and quantitative phenotypes of primary open-angle glaucoma (POAG) in African Americans (AA). AA subjects over 35 years old were recruited for the Primary Open-Angle African American Glaucoma Genetics (POAAGG) study in Philadelphia, PA. Glaucoma cases were evaluated for phenotypes associated with POAG pathogenesis, and the associations between rs112369934 and phenotypes were investigated by logistic regression analysis and in gender-stratified case cohorts: The SNP rs112369934 was found to have a suggestive association with retinal nerve fiber layer (RNFL) thickness and cup-to-disc ratio (CDR) in 1087 male AA POAG cases, individuals with the TC genotype having thinner RNFL (95% CI 0.85 to 6.61, p = 0.01) and larger CDR (95% CI -0.07 to -0.01, p = 0.02) than those with wildtype TT. No other significant associations were found. In conclusion SNP rs112369934 may play a role in POAG pathogenesis in male AA individuals. However, this SNP has been implicated in higher POAG risk in both male and female AA POAG cases.Entities:
Keywords: African Americans; TRIM66; cup-to-disc ratio; genetic diseases; glaucoma; primary open-angle glaucoma; retinal nerve fiber layer
Mesh:
Substances:
Year: 2021 PMID: 34573402 PMCID: PMC8471280 DOI: 10.3390/genes12091420
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Association of TRIM66 rs112369934 in quantitative phenotypes.
| Phenotype | Wildtype TT | Variant TC | Mean Difference (95% CI) | |||
|---|---|---|---|---|---|---|
| N Eyes | Mean (SD) | N Eyes | Mean (SD) | |||
| MD (dB) | 3400 | −8.36 (9.02) | 457 | −8.64 (9.04) | 0.27 (−0.81 to 1.36) | 0.62 |
| PSD (dB) | 3403 | 5.20 (3.47) | 457 | 5.27 (3.40) | −0.07 (−0.45 to 0.32) | 0.73 |
| CCT | 3961 | 533.84 (40.07) | 578 | 529.61 (36.46) | 4.23 (−0.09 to 8.55) | 0.055 |
| CDR | 3986 | 0.71 (0.17) | 569 | 0.72 (0.17) | −0.02 (−0.03 to 0.00) | 0.12 |
| IOP | 4241 | 17.32 (6.00) | 617 | 17.67 (6.66) | −0.35 (−1.06 to 0.35) | 0.33 |
| VA.CC | 3653 | 0.38 (0.84) | 522 | 0.46 (0.92) | −0.08 (−0.17 to 0.01) | 0.09 |
| VA.SC | 2791 | 0.57 (0.98) | 374 | 0.69 (1.12) | −0.12 (−0.26 to 0.02) | 0.09 |
| RNFL | 3401 | 73.40 (14.98) | 475 | 72.29 (15.50) | 1.12 (−0.73 to 2.96) | 0.24 |
Mean deviation (MD), pattern standard deviation (PSD), central corneal thickness (CCT), cup-to-disc ratio (CDR), intra-ocular pressure (IOP), visual acuity (VA) with correction (CC) and without correction (SC), retinal nerve fiber layer (RNFL).
Association of TRIM66 rs112369934 in qualitative POAG phenotypes 1.
| Phenotype | Wildtype | Variant | |
|---|---|---|---|
| TT (N = 3227 Eyes) | TC (N = 462 Eyes) | ||
| Disc Shape | 0.53 | ||
| Round | 944 (48.4%) | 120 (46.0%) | |
| Oval | 1008 (51.6%) | 141 (54.0%) | |
| Disc Size | 0.61 | ||
| Normal | 1934 (98.6%) | 259 (98.1%) | |
| Abnormal | 27 (1.4%) | 5 (1.9%) | |
| Shape of Cup | 0.34 | ||
| Conical | 691 (37.0%) | 93 (37.8%) | |
| Cylindrical | 934 (50.0%) | 112 (45.5%) | |
| Bean | 243 (13.0%) | 41 (16.7%) | |
| Cup Depth | 0.39 | ||
| Shallow | 250 (13.3%) | 25 (10.2%) | |
| Moderate | 1193 (63.3%) | 165 (67.1%) | |
| Severe | 441 (23.4%) | 56 (22.8%) | |
| Rim Plane Position Constant | 0.54 | ||
| No | 288 (15.3%) | 42 (17.0%) | |
| Yes | 1598 (84.7%) | 205 (83.0%) | |
| Rim Depressed Inferior | 0.95 | ||
| No | 1864 (98.8%) | 244 (98.8%) | |
| Yes | 22 (1.2%) | 3 (1.2%) | |
| Rim Depressed Superior | NA | ||
| No | 1886 (100.0%) | 247 (100.0%) | |
| Yes | 0 (0.0%) | 0 (0.0%) | |
| Rim Depressed Nasal | 0.31 | ||
| No | 1854 (98.3%) | 245 (99.2%) | |
| Yes | 32 (1.7%) | 2 (0.8%) | |
| Rim Depressed Temporal | 0.37 | ||
| No | 1640 (87.0%) | 209 (84.6%) | |
| Yes | 246 (13.0%) | 38 (15.4%) | |
| Presence of PPA | NA | ||
| No | 0 (0.0%) | 0 (0.0%) | |
| Yes | 1946 (100.0%) | 262 (100.0%) | |
| Borders of PPA | 0.68 | ||
| Indistinct | 243 (12.5%) | 30 (11.5%) | |
| Distinct | 1701 (87.5%) | 231 (88.5%) | |
| Excavation | 0.37 | ||
| No | 1415 (74.9%) | 194 (77.9%) | |
| Yes | 473 (25.1%) | 55 (22.1%) | |
| Heavy TM Pigmentation | 0.33 | ||
| Indistinct | 1499 (77.1%) | 192 (73.8%) | |
| Distinct | 446 (22.9%) | 68 (26.2%) | |
| Disc Tilt | 0.08 | ||
| No | 1841 (94.6%) | 237 (91.2%) | |
| Yes | 106 (5.4%) | 23 (8.8%) | |
| Disc Hemorrhage | 0.41 | ||
| No | 1914 (98.2%) | 255 (97.3%) | |
| Yes | 36 (1.8%) | 7 (2.7%) | |
| Notching | 0.21 | ||
| No | 1797 (93.9%) | 244 (96.1%) | |
| Yes | 116 (6.1%) | 10 (3.9%) | |
| Disc Pallor | 0.69 | ||
| No | 1886 (96.7%) | 253 (96.2%) | |
| Yes | 64 (3.3%) | 10 (3.8%) |
1 A portion of images for qualitative phenotypic grading were missing or of poor quality, leading to missing data for the qualitative phenotypes for both genotypes.
Association of TRIM66 rs112369934 in our measured quantitative phenotypes in gender stratified analysis.
| Gender | Phenotype | Wildtype TT | Variant TC | Mean Difference (95% CI) | |||
|---|---|---|---|---|---|---|---|
| N Eyes | Mean (SD) | N Eyes | Mean (SD) | ||||
| Males | MD (dB) | 1492 | −9.38 (9.89) | 158 | −10.83 (10.71) | 1.45 (−0.63 to 3.54) | 0.17 |
| PSD (dB) | 1492 | 5.33 (3.51) | 158 | 5.60 (3.50) | −0.27 (−0.87 to 0.34) | 0.39 | |
| CCT | 1680 | 534.78 (40.80) | 206 | 529.12 (34.40) | 5.66 (−1.27 to 12.59) | 0.11 | |
| CDR | 1737 | 0.73 (0.17) | 210 | 0.77 (0.17) | −0.04 (−0.07 to −0.01) | 0.02 | |
| IOP | 1824 | 17.27 (6.17) | 223 | 17.97 (7.82) | −0.70 (−2.07 to 0.67) | 0.32 | |
| VA.CC | 1548 | 0.43 (0.93) | 183 | 0.53 (0.94) | −0.09 (−0.25 to 0.06) | 0.23 | |
| VA.SC | 1204 | 0.63 (1.09) | 147 | 0.73 (1.10) | −0.10 (−0.32 to 0.12) | 0.38 | |
| RNFL | 1438 | 71.47 (14.84) | 160 | 67.74 (14.88) | 3.73 (0.85 to 6.61) | 0.01 | |
| Females | MD (dB) | 1908 | −7.57 (8.19) | 299 | −7.48 (7.78) | −0.09 (−1.29 to 1.11) | 0.88 |
| PSD (dB) | 1911 | 5.10 (3.44) | 299 | 5.09 (3.34) | 0.00 (−0.49 to 0.50) | 0.99 | |
| CCT | 2281 | 533.15 (39.52) | 372 | 529.89 (37.60) | 3.27 (−2.25 to 8.78) | 0.25 | |
| CDR | 2249 | 0.69 (0.17) | 359 | 0.70 (0.16) | −0.01 (−0.03 to 0.02) | 0.56 | |
| IOP | 2417 | 17.35 (5.87) | 394 | 17.50 (5.91) | −0.15 (−0.94 to 0.64) | 0.72 | |
| VA.CC | 2105 | 0.35 (0.76) | 339 | 0.43 (0.91) | −0.08 (−0.19 to 0.03) | 0.16 | |
| VA.SC | 1587 | 0.52 (0.88) | 227 | 0.66 (1.14) | −0.14 (−0.31 to 0.04) | 0.12 | |
| RNFL | 1963 | 74.82 (14.92) | 315 | 74.59 (15.33) | 0.22 (−2.07 to 2.52) | 0.85 | |
Mean deviation (MD), pattern standard deviation (PSD), central corneal thickness (CCT), cup-to-disc ratio (CDR), intra-ocular pressure (IOP), visual acuity (VA) with correction (CC) and without correction (SC), retinal nerve fiber layer (RNFL).