Literature DB >> 34561242

Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung.

Sai Ma1,2,3, Lindsay M LaFave1,2, Arjun Bhutkar1, Carla P Concepcion1, Manyuan Liu1, Lydia P DeAngelo1, Jonathan Y Kim1, Isabella Del Priore1, Adam J Schoenfeld4,5, Manon Miller1, Vinay K Kartha2, Peter M K Westcott1, Francisco J Sánchez-Rivera6, Kevin Meli1, Manav Gupta7,8, Roderick T Bronson9, Gregory J Riely4,5, Natasha Rekhtman10, Charles M Rudin4,5,11, Carla F Kim7,12,13, Aviv Regev1,3, Jason D Buenrostro2, Tyler Jacks14,15.   

Abstract

SMARCA4/BRG1 encodes for one of two mutually exclusive ATPases present in mammalian SWI/SNF chromatin remodeling complexes and is frequently mutated in human lung adenocarcinoma. However, the functional consequences of SMARCA4 mutation on tumor initiation, progression, and chromatin regulation in lung cancer remain poorly understood. Here, we demonstrate that loss of Smarca4 sensitizes club cell secretory protein-positive cells within the lung in a cell type-dependent fashion to malignant transformation and tumor progression, resulting in highly advanced dedifferentiated tumors and increased metastatic incidence. Consistent with these phenotypes, Smarca4-deficient primary tumors lack lung lineage transcription factor activities and resemble a metastatic cell state. Mechanistically, we show that Smarca4 loss impairs the function of all three classes of SWI/SNF complexes, resulting in decreased chromatin accessibility at lung lineage motifs and ultimately accelerating tumor progression. Thus, we propose that the SWI/SNF complex via Smarca4 acts as a gatekeeper for lineage-specific cellular transformation and metastasis during lung cancer evolution. SIGNIFICANCE: We demonstrate cell-type specificity in the tumor-suppressive functions of SMARCA4 in the lung, pointing toward a critical role of the cell-of-origin in driving SWI/SNF-mutant lung adenocarcinoma. We further show the direct effects of SMARCA4 loss on SWI/SNF function and chromatin regulation that cause aggressive malignancy during lung cancer evolution.This article is highlighted in the In This Issue feature, p. 275. ©2021 American Association for Cancer Research.

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Year:  2021        PMID: 34561242      PMCID: PMC8831463          DOI: 10.1158/2159-8290.CD-21-0248

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   38.272


  84 in total

1.  Analysis of lung tumor initiation and progression using conditional expression of oncogenic K-ras.

Authors:  E L Jackson; N Willis; K Mercer; R T Bronson; D Crowley; R Montoya; T Jacks; D A Tuveson
Journal:  Genes Dev       Date:  2001-12-15       Impact factor: 11.361

2.  Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells.

Authors:  Antonella F M Dost; Aaron L Moye; Marall Vedaie; Linh M Tran; Eileen Fung; Dar Heinze; Carlos Villacorta-Martin; Jessie Huang; Ryan Hekman; Julian H Kwan; Benjamin C Blum; Sharon M Louie; Samuel P Rowbotham; Julio Sainz de Aja; Mary E Piper; Preetida J Bhetariya; Roderick T Bronson; Andrew Emili; Gustavo Mostoslavsky; Gregory A Fishbein; William D Wallace; Kostyantyn Krysan; Steven M Dubinett; Jane Yanagawa; Darrell N Kotton; Carla F Kim
Journal:  Cell Stem Cell       Date:  2020-09-04       Impact factor: 24.633

3.  Targeted in situ genome-wide profiling with high efficiency for low cell numbers.

Authors:  Peter J Skene; Jorja G Henikoff; Steven Henikoff
Journal:  Nat Protoc       Date:  2018-04-12       Impact factor: 13.491

4.  Epigenomic State Transitions Characterize Tumor Progression in Mouse Lung Adenocarcinoma.

Authors:  Lindsay M LaFave; Vinay K Kartha; Sai Ma; Kevin Meli; Isabella Del Priore; Caleb Lareau; Santiago Naranjo; Peter M K Westcott; Fabiana M Duarte; Venkat Sankar; Zachary Chiang; Alison Brack; Travis Law; Haley Hauck; Annalisa Okimoto; Aviv Regev; Jason D Buenrostro; Tyler Jacks
Journal:  Cancer Cell       Date:  2020-07-23       Impact factor: 31.743

5.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

6.  cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data.

Authors:  Carmen Bravo González-Blas; Liesbeth Minnoye; Dafni Papasokrati; Sara Aibar; Gert Hulselmans; Valerie Christiaens; Kristofer Davie; Jasper Wouters; Stein Aerts
Journal:  Nat Methods       Date:  2019-04-08       Impact factor: 28.547

7.  Conditional mouse lung cancer models using adenoviral or lentiviral delivery of Cre recombinase.

Authors:  Michel DuPage; Alison L Dooley; Tyler Jacks
Journal:  Nat Protoc       Date:  2009-06-25       Impact factor: 13.491

8.  ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.

Authors:  Jason D Buenrostro; Beijing Wu; Howard Y Chang; William J Greenleaf
Journal:  Curr Protoc Mol Biol       Date:  2015-01-05

9.  A molecular cell atlas of the human lung from single-cell RNA sequencing.

Authors:  Kyle J Travaglini; Ahmad N Nabhan; Lolita Penland; Rahul Sinha; Astrid Gillich; Rene V Sit; Stephen Chang; Stephanie D Conley; Yasuo Mori; Jun Seita; Gerald J Berry; Joseph B Shrager; Ross J Metzger; Christin S Kuo; Norma Neff; Irving L Weissman; Stephen R Quake; Mark A Krasnow
Journal:  Nature       Date:  2020-11-18       Impact factor: 49.962

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  6 in total

Review 1.  Untangling the web of intratumour heterogeneity.

Authors:  Zheqi Li; Marco Seehawer; Kornelia Polyak
Journal:  Nat Cell Biol       Date:  2022-08-08       Impact factor: 28.213

2.  Deciphering the immunopeptidome in vivo reveals new tumour antigens.

Authors:  Alex M Jaeger; Lauren E Stopfer; Ryuhjin Ahn; Emma A Sanders; Demi A Sandel; William A Freed-Pastor; William M Rideout; Santiago Naranjo; Tim Fessenden; Kim B Nguyen; Peter S Winter; Ryan E Kohn; Peter M K Westcott; Jason M Schenkel; Sean-Luc Shanahan; Alex K Shalek; Stefani Spranger; Forest M White; Tyler Jacks
Journal:  Nature       Date:  2022-06-15       Impact factor: 69.504

Review 3.  Cellular and molecular mechanisms of plasticity in cancer.

Authors:  Stefan R Torborg; Zhuxuan Li; Jason E Chan; Tuomas Tammela
Journal:  Trends Cancer       Date:  2022-05-23

4.  Exploration of Novel Immunological Terms in Lung Cancer With Large Populations: Implications for Immunotherapy.

Authors:  Yuanshan Yao; Jing Wang; Fuzhi Yang; Wen Gao
Journal:  Front Immunol       Date:  2022-06-30       Impact factor: 8.786

5.  Club cells employ regeneration mechanisms during lung tumorigenesis.

Authors:  Yuanyuan Chen; Reka Toth; Sara Chocarro; Dieter Weichenhan; Joschka Hey; Pavlo Lutsik; Stefan Sawall; Georgios T Stathopoulos; Christoph Plass; Rocio Sotillo
Journal:  Nat Commun       Date:  2022-08-05       Impact factor: 17.694

6.  HMOX1 promotes lung adenocarcinoma metastasis by affecting macrophages and mitochondrion complexes.

Authors:  Bo Chen; Liyang Zhang; Hongshu Zhou; Wenrui Ye; Cong Luo; Liting Yang; Ning Fang; Anliu Tang
Journal:  Front Oncol       Date:  2022-08-12       Impact factor: 5.738

  6 in total

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