Literature DB >> 32891189

Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells.

Antonella F M Dost1, Aaron L Moye1, Marall Vedaie2, Linh M Tran3, Eileen Fung4, Dar Heinze5, Carlos Villacorta-Martin6, Jessie Huang2, Ryan Hekman7, Julian H Kwan7, Benjamin C Blum7, Sharon M Louie1, Samuel P Rowbotham1, Julio Sainz de Aja1, Mary E Piper8, Preetida J Bhetariya9, Roderick T Bronson10, Andrew Emili11, Gustavo Mostoslavsky5, Gregory A Fishbein12, William D Wallace13, Kostyantyn Krysan3, Steven M Dubinett14, Jane Yanagawa15, Darrell N Kotton16, Carla F Kim17.   

Abstract

Mutant KRAS is a common driver in epithelial cancers. Nevertheless, molecular changes occurring early after activation of oncogenic KRAS in epithelial cells remain poorly understood. We compared transcriptional changes at single-cell resolution after KRAS activation in four sample sets. In addition to patient samples and genetically engineered mouse models, we developed organoid systems from primary mouse and human induced pluripotent stem cell-derived lung epithelial cells to model early-stage lung adenocarcinoma. In all four settings, alveolar epithelial progenitor (AT2) cells expressing oncogenic KRAS had reduced expression of mature lineage identity genes. These findings demonstrate the utility of our in vitro organoid approaches for uncovering the early consequences of oncogenic KRAS expression. This resource provides an extensive collection of datasets and describes organoid tools to study the transcriptional and proteomic changes that distinguish normal epithelial progenitor cells from early-stage lung cancer, facilitating the search for targets for KRAS-driven tumors.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  KRAS; alveolar; developmental programs; early-stage lung cancer; iPSC; loss of differentiation; organoid; single-cell RNA sequencing; stage IA lung adenocarcinoma; tumor progression

Mesh:

Substances:

Year:  2020        PMID: 32891189      PMCID: PMC7541765          DOI: 10.1016/j.stem.2020.07.022

Source DB:  PubMed          Journal:  Cell Stem Cell        ISSN: 1875-9777            Impact factor:   24.633


  84 in total

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Authors:  Jing Yang; Robert A Weinberg
Journal:  Dev Cell       Date:  2008-06       Impact factor: 12.270

2.  Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells.

Authors:  Anjali Jacob; Michael Morley; Finn Hawkins; Katherine B McCauley; J C Jean; Hillary Heins; Cheng-Lun Na; Timothy E Weaver; Marall Vedaie; Killian Hurley; Anne Hinds; Scott J Russo; Seunghyi Kook; William Zacharias; Matthias Ochs; Katrina Traber; Lee J Quinton; Ana Crane; Brian R Davis; Frances V White; Jennifer Wambach; Jeffrey A Whitsett; F Sessions Cole; Edward E Morrisey; Susan H Guttentag; Michael F Beers; Darrell N Kotton
Journal:  Cell Stem Cell       Date:  2017-09-28       Impact factor: 24.633

3.  Bias, robustness and scalability in single-cell differential expression analysis.

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Journal:  Nat Methods       Date:  2018-02-26       Impact factor: 28.547

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Authors:  Gioele La Manno; Ruslan Soldatov; Amit Zeisel; Emelie Braun; Hannah Hochgerner; Viktor Petukhov; Katja Lidschreiber; Maria E Kastriti; Peter Lönnerberg; Alessandro Furlan; Jean Fan; Lars E Borm; Zehua Liu; David van Bruggen; Jimin Guo; Xiaoling He; Roger Barker; Erik Sundström; Gonçalo Castelo-Branco; Patrick Cramer; Igor Adameyko; Sten Linnarsson; Peter V Kharchenko
Journal:  Nature       Date:  2018-08-08       Impact factor: 49.962

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2.  Skin organoids: A new human model for developmental and translational research.

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Journal:  Exp Dermatol       Date:  2021-02-18       Impact factor: 3.960

3.  Smarca4 Inactivation Promotes Lineage-Specific Transformation and Early Metastatic Features in the Lung.

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8.  Heterogeneity in Human Induced Pluripotent Stem Cell-derived Alveolar Epithelial Type II Cells Revealed with ABCA3/SFTPC Reporters.

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Review 10.  Human pluripotent stem cell-derived brain organoids as in vitro models for studying neural disorders and cancer.

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Journal:  Cell Biosci       Date:  2021-05-28       Impact factor: 7.133

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