Literature DB >> 34558129

Comparison of linear combination modeling strategies for edited magnetic resonance spectroscopy at 3 T.

Helge J Zöllner1,2, Sofie Tapper1,2, Steve C N Hui1,2, Peter B Barker1,2, Richard A E Edden1,2, Georg Oeltzschner1,2.   

Abstract

J-difference-edited spectroscopy is a valuable approach for the in vivo detection of γ-aminobutyric-acid (GABA) with magnetic resonance spectroscopy (MRS). A recent expert consensus article recommends linear combination modeling (LCM) of edited MRS but does not give specific details regarding implementation. This study explores different modeling strategies to adapt LCM for GABA-edited MRS. Sixty-one medial parietal lobe GABA-edited MEGA-PRESS spectra from a recent 3-T multisite study were modeled using 102 different strategies combining six different approaches to account for co-edited macromolecules (MMs), three modeling ranges, three baseline knot spacings, and the use of basis sets with or without homocarnosine. The resulting GABA and GABA+ estimates (quantified relative to total creatine), the residuals at different ranges, standard deviations and coefficients of variation (CVs), and Akaike information criteria, were used to evaluate the models' performance. Significantly different GABA+ and GABA estimates were found when a well-parameterized MM3co basis function was included in the model. The mean GABA estimates were significantly lower when modeling MM3co , while the CVs were similar. A sparser spline knot spacing led to lower variation in the GABA and GABA+ estimates, and a narrower modeling range-only including the signals of interest-did not substantially improve or degrade modeling performance. Additionally, the results suggest that LCM can separate GABA and the underlying co-edited MM3co . Incorporating homocarnosine into the modeling did not significantly improve variance in GABA+ estimates. In conclusion, GABA-edited MRS is most appropriately quantified by LCM with a well-parameterized co-edited MM3co basis function with a constraint to the nonoverlapped MM0.93 , in combination with a sparse spline knot spacing (0.55 ppm) and a modeling range of 0.5-4 ppm.
© 2021 John Wiley & Sons, Ltd.

Entities:  

Keywords:  GABA-edited MEGA-PRESS, linear combination modeling, magnetic resonance spectroscopy

Mesh:

Substances:

Year:  2021        PMID: 34558129      PMCID: PMC8935346          DOI: 10.1002/nbm.4618

Source DB:  PubMed          Journal:  NMR Biomed        ISSN: 0952-3480            Impact factor:   4.044


  29 in total

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3.  Big GABA: Edited MR spectroscopy at 24 research sites.

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Journal:  Neuroimage       Date:  2017-07-14       Impact factor: 6.556

4.  A semi-LASER, single-voxel spectroscopic sequence with a minimal echo time of 20.1 ms in the human brain at 3 T.

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Journal:  NMR Biomed       Date:  2020-06-18       Impact factor: 4.044

5.  Altered macromolecular pattern and content in the aging human brain.

Authors:  Małgorzata Marjańska; Dinesh K Deelchand; James S Hodges; J Riley McCarten; Laura S Hemmy; Andrea Grant; Melissa Terpstra
Journal:  NMR Biomed       Date:  2017-12-20       Impact factor: 4.044

6.  Gannet: A batch-processing tool for the quantitative analysis of gamma-aminobutyric acid–edited MR spectroscopy spectra.

Authors:  Richard A E Edden; Nicolaas A J Puts; Ashley D Harris; Peter B Barker; C John Evans
Journal:  J Magn Reson Imaging       Date:  2013-11-13       Impact factor: 4.813

Review 7.  Methodological consensus on clinical proton MRS of the brain: Review and recommendations.

Authors:  Martin Wilson; Ovidiu Andronesi; Peter B Barker; Robert Bartha; Alberto Bizzi; Patrick J Bolan; Kevin M Brindle; In-Young Choi; Cristina Cudalbu; Ulrike Dydak; Uzay E Emir; Ramon G Gonzalez; Stephan Gruber; Rolf Gruetter; Rakesh K Gupta; Arend Heerschap; Anke Henning; Hoby P Hetherington; Petra S Huppi; Ralph E Hurd; Kejal Kantarci; Risto A Kauppinen; Dennis W J Klomp; Roland Kreis; Marijn J Kruiskamp; Martin O Leach; Alexander P Lin; Peter R Luijten; Małgorzata Marjańska; Andrew A Maudsley; Dieter J Meyerhoff; Carolyn E Mountford; Paul G Mullins; James B Murdoch; Sarah J Nelson; Ralph Noeske; Gülin Öz; Julie W Pan; Andrew C Peet; Harish Poptani; Stefan Posse; Eva-Maria Ratai; Nouha Salibi; Tom W J Scheenen; Ian C P Smith; Brian J Soher; Ivan Tkáč; Daniel B Vigneron; Franklyn A Howe
Journal:  Magn Reson Med       Date:  2019-03-28       Impact factor: 4.668

8.  Reduction in occipital cortex gamma-aminobutyric acid concentrations in medication-free recovered unipolar depressed and bipolar subjects.

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Journal:  Biol Psychiatry       Date:  2007-01-08       Impact factor: 13.382

9.  Comparison of different linear-combination modeling algorithms for short-TE proton spectra.

Authors:  Helge J Zöllner; Michal Považan; Steve C N Hui; Sofie Tapper; Richard A E Edden; Georg Oeltzschner
Journal:  NMR Biomed       Date:  2021-02-02       Impact factor: 4.044

10.  Frequency drift in MR spectroscopy at 3T.

Authors:  Steve C N Hui; Mark Mikkelsen; Helge J Zöllner; Vishwadeep Ahluwalia; Sarael Alcauter; Laima Baltusis; Deborah A Barany; Laura R Barlow; Robert Becker; Jeffrey I Berman; Adam Berrington; Pallab K Bhattacharyya; Jakob Udby Blicher; Wolfgang Bogner; Mark S Brown; Vince D Calhoun; Ryan Castillo; Kim M Cecil; Yeo Bi Choi; Winnie C W Chu; William T Clarke; Alexander R Craven; Koen Cuypers; Michael Dacko; Camilo de la Fuente-Sandoval; Patricia Desmond; Aleksandra Domagalik; Julien Dumont; Niall W Duncan; Ulrike Dydak; Katherine Dyke; David A Edmondson; Gabriele Ende; Lars Ersland; C John Evans; Alan S R Fermin; Antonio Ferretti; Ariane Fillmer; Tao Gong; Ian Greenhouse; James T Grist; Meng Gu; Ashley D Harris; Katarzyna Hat; Stefanie Heba; Eva Heckova; John P Hegarty; Kirstin-Friederike Heise; Shiori Honda; Aaron Jacobson; Jacobus F A Jansen; Christopher W Jenkins; Stephen J Johnston; Christoph Juchem; Alayar Kangarlu; Adam B Kerr; Karl Landheer; Thomas Lange; Phil Lee; Swati Rane Levendovszky; Catherine Limperopoulos; Feng Liu; William Lloyd; David J Lythgoe; Maro G Machizawa; Erin L MacMillan; Richard J Maddock; Andrei V Manzhurtsev; María L Martinez-Gudino; Jack J Miller; Heline Mirzakhanian; Marta Moreno-Ortega; Paul G Mullins; Shinichiro Nakajima; Jamie Near; Ralph Noeske; Wibeke Nordhøy; Georg Oeltzschner; Raul Osorio-Duran; Maria C G Otaduy; Erick H Pasaye; Ronald Peeters; Scott J Peltier; Ulrich Pilatus; Nenad Polomac; Eric C Porges; Subechhya Pradhan; James Joseph Prisciandaro; Nicolaas A Puts; Caroline D Rae; Francisco Reyes-Madrigal; Timothy P L Roberts; Caroline E Robertson; Jens T Rosenberg; Diana-Georgiana Rotaru; Ruth L O'Gorman Tuura; Muhammad G Saleh; Kristian Sandberg; Ryan Sangill; Keith Schembri; Anouk Schrantee; Natalia A Semenova; Debra Singel; Rouslan Sitnikov; Jolinda Smith; Yulu Song; Craig Stark; Diederick Stoffers; Stephan P Swinnen; Rongwen Tain; Costin Tanase; Sofie Tapper; Martin Tegenthoff; Thomas Thiel; Marc Thioux; Peter Truong; Pim van Dijk; Nolan Vella; Rishma Vidyasagar; Andrej Vovk; Guangbin Wang; Lars T Westlye; Timothy K Wilbur; William R Willoughby; Martin Wilson; Hans-Jörg Wittsack; Adam J Woods; Yen-Chien Wu; Junqian Xu; Maria Yanez Lopez; David K W Yeung; Qun Zhao; Xiaopeng Zhou; Gasper Zupan; Richard A E Edden
Journal:  Neuroimage       Date:  2021-07-24       Impact factor: 6.556

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  5 in total

1.  Brain metabolite alterations related to alcohol use: a meta-analysis of proton magnetic resonance spectroscopy studies.

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2.  Influence of editing pulse flip angle on J-difference MR spectroscopy.

Authors:  Sofie Tapper; Steve C N Hui; Muhammad G Saleh; Helge J Zöllner; Georg Oeltzschner; Jamie Near; Brian J Soher; Richard A E Edden
Journal:  Magn Reson Med       Date:  2021-09-14       Impact factor: 4.668

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Authors:  Alexander R Craven; Pallab K Bhattacharyya; William T Clarke; Ulrike Dydak; Richard A E Edden; Lars Ersland; Pravat K Mandal; Mark Mikkelsen; James B Murdoch; Jamie Near; Reuben Rideaux; Deepika Shukla; Min Wang; Martin Wilson; Helge J Zöllner; Kenneth Hugdahl; Georg Oeltzschner
Journal:  NMR Biomed       Date:  2022-02-23       Impact factor: 4.478

4.  Importance of Linear Combination Modeling for Quantification of Glutathione and γ-Aminobutyric Acid Levels Using Hadamard-Edited Magnetic Resonance Spectroscopy.

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5.  The association between language-based task-functional magnetic resonance imaging hemodynamics and baseline GABA+ and glutamate-glutamine measured in pre-supplementary motor area: A pilot study in an aging model.

Authors:  Lisa C Krishnamurthy; Isabella Paredes Spir; Natalie O Rocha; Brian J Soher; Edward J Auerbach; Bruce A Crosson; Venkatagiri Krishnamurthy
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