Literature DB >> 3455763

Total DNA transcription in vitro: a procedure to detect highly repetitive and transcribable sequences with tRNA-like structures.

H Endoh, N Okada.   

Abstract

Total DNAs from various animals were transcribed in vitro in a HeLa cell extract, and it was found that one to several discrete RNAs were transcribed by RNA polymerase III. With tortoise (Geoclemys reevessi) and newt (Cynops pyrrhogaster), distinct 6.5S and 8S RNAs were transcribed from these respective DNAs. Representative phage clones carrying the 6.5S and 8S RNA genes were isolated from genomic libraries of these animals, and the sequences of these genes were determined. The 5' parts of highly repetitive and transcribable sequences of tortoise and newt were found to have close resemblance to tRNALys1 (rabbit) gene (78% homology) and a tRNAGlu (Drosophila) gene (74% homology, not counting the aminoacyl stem region), respectively. The homologies extended to secondary structures, homologous nucleotides being located on similar secondary structures. It is proposed that many, if not all, highly repetitive and transcribable sequences detected by total DNA transcription have specific tRNA genes as their progenitors.

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Year:  1986        PMID: 3455763      PMCID: PMC322835          DOI: 10.1073/pnas.83.2.251

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Pseudouridylic modification of a 6S RNA transcribed in vitro from highly repetitive and transcribable (Hirt) sequences of salmon total DNA.

Authors:  K Matsumoto; K Murakami; N Okada
Journal:  Biochem Biophys Res Commun       Date:  1984-10-30       Impact factor: 3.575

2.  The 6S RNA transcribed from rodent total DNA in vitro is the transcript of the type 2 Alu family.

Authors:  K Sakamoto; R Kominami; Y Mishima; N Okada
Journal:  Mol Gen Genet       Date:  1984

3.  Covalent enzyme-RNA complex: a tRNA modification that prevents a covalent enzyme interaction also prevents aminoacylation.

Authors:  R Starzyk; H Schoemaker; P Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  1985-01       Impact factor: 11.205

4.  The leader mRNA of the histidine attenuator region resembles tRNAHis: possible general regulatory implications.

Authors:  B N Ames; T H Tsang; M Buck; M F Christman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-09       Impact factor: 11.205

5.  A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.

Authors:  J Messing; J Vieira
Journal:  Gene       Date:  1982-10       Impact factor: 3.688

6.  SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes.

Authors:  M F Singer
Journal:  Cell       Date:  1982-03       Impact factor: 41.582

7.  In vitro transcription of normal, mutant, and truncated mouse alpha-globin genes.

Authors:  C A Talkington; Y Nishioka; P Leder
Journal:  Proc Natl Acad Sci U S A       Date:  1980-12       Impact factor: 11.205

8.  Nucleotide sequence of three isoaccepting lysine tRNAs from rabbit liver and SV40-transformed mouse fibroblasts.

Authors:  M Raba; K Limburg; M Burghagen; J R Katze; M Simsek; J E Heckman; U L Rajbhandary; H J Gross
Journal:  Eur J Biochem       Date:  1979-06

9.  Repeat sequence families derived from mammalian tRNA genes.

Authors:  G R Daniels; P L Deininger
Journal:  Nature       Date:  1985 Oct 31-Nov 6       Impact factor: 49.962

10.  Alu sequences are processed 7SL RNA genes.

Authors:  E Ullu; C Tschudi
Journal:  Nature       Date:  1984 Nov 8-14       Impact factor: 49.962

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  25 in total

1.  Transfer RNA-like structure of the human Alu family: implications of its generation mechanism and possible functions.

Authors:  N Okada
Journal:  J Mol Evol       Date:  1990-12       Impact factor: 2.395

2.  Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution.

Authors:  Y Kido; M Aono; T Yamaki; K Matsumoto; S Murata; M Saneyoshi; N Okada
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

3.  5S-rRNA genes in rice embryos.

Authors:  N Hariharan; P S Reddy; J D Padayatty
Journal:  Plant Mol Biol       Date:  1987-09       Impact factor: 4.076

4.  The 3' ends of tRNA-derived SINEs originated from the 3' ends of LINEs: a new example from the bovine genome.

Authors:  N Okada; M Hamada
Journal:  J Mol Evol       Date:  1997       Impact factor: 2.395

5.  tRNA derived insertion element in histone gene repeating unit of Drosophila melanogaster.

Authors:  Y Matsuo; T Yamazaki
Journal:  Nucleic Acids Res       Date:  1989-01-11       Impact factor: 16.971

6.  Tetrahymena pyriformis DNA fragment with a gene cluster for 3 putative serine tRNAs and an asparagine tRNA.

Authors:  H Endoh; S Nagahashi; N Okada
Journal:  Nucleic Acids Res       Date:  1989-12-11       Impact factor: 16.971

7.  A retroposon-like short repetitive DNA element in the genome of the human blood fluke, Schistosoma mansoni.

Authors:  L D Spotila; H Hirai; D M Rekosh; P T Lo Verde
Journal:  Chromosoma       Date:  1989-05       Impact factor: 4.316

8.  Gene for lysine tRNA1 may be a progenitor of the highly repetitive and transcribable sequences present in the salmon genome.

Authors:  K Matsumoto; K Murakami; N Okada
Journal:  Proc Natl Acad Sci U S A       Date:  1986-05       Impact factor: 11.205

9.  Small tandemly repeated DNA sequences of higher plants likely originate from a tRNA gene ancestor.

Authors:  A A Benslimane; M Dron; C Hartmann; A Rode
Journal:  Nucleic Acids Res       Date:  1986-10-24       Impact factor: 16.971

10.  Identification of a repeated sequence in the genome of the sea urchin which is transcribed by RNA polymerase III and contains the features of a retroposon.

Authors:  P E Nisson; R J Hickey; M F Boshar; W R Crain
Journal:  Nucleic Acids Res       Date:  1988-02-25       Impact factor: 16.971

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