Literature DB >> 34556855

Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.

Laura Martin-Sancho1, Shashank Tripathi2,3,4, Ariel Rodriguez-Frandsen1, Lars Pache1, Maite Sanchez-Aparicio2,3, Michael J McGregor5,6,7, Kelsey M Haas5,6,7, Danielle L Swaney5,6,7, Thong T Nguyen5,6,7, João I Mamede8, Christopher Churas9, Dexter Pratt9, Sara B Rosenthal9, Laura Riva1, Courtney Nguyen1, Nish Beltran-Raygoza1, Stephen Soonthornvacharin1, Guojun Wang2,3, David Jimenez-Morales5,6,7,10, Paul D De Jesus1, Hong M Moulton11, David A Stein11, Max W Chang9, Chris Benner9, Trey Ideker9,12, Randy A Albrecht2,3, Judd F Hultquist6,13, Nevan J Krogan5,6,7, Adolfo García-Sastre2,3,14,15, Sumit K Chanda16.   

Abstract

The fate of influenza A virus (IAV) infection in the host cell depends on the balance between cellular defence mechanisms and viral evasion strategies. To illuminate the landscape of IAV cellular restriction, we generated and integrated global genetic loss-of-function screens with transcriptomics and proteomics data. Our multi-omics analysis revealed a subset of both IFN-dependent and independent cellular defence mechanisms that inhibit IAV replication. Amongst these, the autophagy regulator TBC1 domain family member 5 (TBC1D5), which binds Rab7 to enable fusion of autophagosomes and lysosomes, was found to control IAV replication in vitro and in vivo and to promote lysosomal targeting of IAV M2 protein. Notably, IAV M2 was observed to abrogate TBC1D5-Rab7 binding through a physical interaction with TBC1D5 via its cytoplasmic tail. Our results provide evidence for the molecular mechanism utilised by IAV M2 protein to escape lysosomal degradation and traffic to the cell membrane, where it supports IAV budding and growth.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34556855     DOI: 10.1038/s41564-021-00964-2

Source DB:  PubMed          Journal:  Nat Microbiol        ISSN: 2058-5276            Impact factor:   30.964


  78 in total

1.  Influenza virus-host interactome screen as a platform for antiviral drug development.

Authors:  Tokiko Watanabe; Eiryo Kawakami; Jason E Shoemaker; Tiago J S Lopes; Yukiko Matsuoka; Yuriko Tomita; Hiroko Kozuka-Hata; Takeo Gorai; Tomoko Kuwahara; Eiji Takeda; Atsushi Nagata; Ryo Takano; Maki Kiso; Makoto Yamashita; Yuko Sakai-Tagawa; Hiroaki Katsura; Naoki Nonaka; Hiroko Fujii; Ken Fujii; Yukihiko Sugita; Takeshi Noda; Hideo Goto; Satoshi Fukuyama; Shinji Watanabe; Gabriele Neumann; Masaaki Oyama; Hiroaki Kitano; Yoshihiro Kawaoka
Journal:  Cell Host Microbe       Date:  2014-11-20       Impact factor: 21.023

2.  Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication.

Authors:  Alexander Karlas; Nikolaus Machuy; Yujin Shin; Klaus-Peter Pleissner; Anita Artarini; Dagmar Heuer; Daniel Becker; Hany Khalil; Lesley A Ogilvie; Simone Hess; André P Mäurer; Elke Müller; Thorsten Wolff; Thomas Rudel; Thomas F Meyer
Journal:  Nature       Date:  2010-01-17       Impact factor: 49.962

3.  Meta- and Orthogonal Integration of Influenza "OMICs" Data Defines a Role for UBR4 in Virus Budding.

Authors:  Shashank Tripathi; Marie O Pohl; Yingyao Zhou; Ariel Rodriguez-Frandsen; Guojun Wang; David A Stein; Hong M Moulton; Paul DeJesus; Jianwei Che; Lubbertus C F Mulder; Emilio Yángüez; Dario Andenmatten; Lars Pache; Balaji Manicassamy; Randy A Albrecht; Maria G Gonzalez; Quy Nguyen; Abraham Brass; Stephen Elledge; Michael White; Sagi Shapira; Nir Hacohen; Alexander Karlas; Thomas F Meyer; Michael Shales; Andre Gatorano; Jeffrey R Johnson; Gwen Jang; Tasha Johnson; Erik Verschueren; Doug Sanders; Nevan Krogan; Megan Shaw; Renate König; Silke Stertz; Adolfo García-Sastre; Sumit K Chanda
Journal:  Cell Host Microbe       Date:  2015-12-09       Impact factor: 21.023

4.  Human host factors required for influenza virus replication.

Authors:  Renate König; Silke Stertz; Yingyao Zhou; Atsushi Inoue; H-Heinrich Hoffmann; Suchita Bhattacharyya; Judith G Alamares; Donna M Tscherne; Mila B Ortigoza; Yuhong Liang; Qinshan Gao; Shane E Andrews; Sourav Bandyopadhyay; Paul De Jesus; Buu P Tu; Lars Pache; Crystal Shih; Anthony Orth; Ghislain Bonamy; Loren Miraglia; Trey Ideker; Adolfo García-Sastre; John A T Young; Peter Palese; Megan L Shaw; Sumit K Chanda
Journal:  Nature       Date:  2010-02-11       Impact factor: 49.962

5.  A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.

Authors:  Sagi D Shapira; Irit Gat-Viks; Bennett O V Shum; Amelie Dricot; Marciela M de Grace; Liguo Wu; Piyush B Gupta; Tong Hao; Serena J Silver; David E Root; David E Hill; Aviv Regev; Nir Hacohen
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

6.  RNAi-based small molecule repositioning reveals clinically approved urea-based kinase inhibitors as broadly active antivirals.

Authors:  Markus Lesch; Madlen Luckner; Michael Meyer; Friderike Weege; Isabella Gravenstein; Martin Raftery; Christian Sieben; Laura Martin-Sancho; Aki Imai-Matsushima; Robert-William Welke; Rebecca Frise; Wendy Barclay; Günther Schönrich; Andreas Herrmann; Thomas F Meyer; Alexander Karlas
Journal:  PLoS Pathog       Date:  2019-03-18       Impact factor: 6.823

7.  Genome-wide CRISPR screen identifies host dependency factors for influenza A virus infection.

Authors:  Bo Li; Sara M Clohisey; Bing Shao Chia; Bo Wang; Ang Cui; Thomas Eisenhaure; Lawrence D Schweitzer; Paul Hoover; Nicholas J Parkinson; Aharon Nachshon; Nikki Smith; Tim Regan; David Farr; Michael U Gutmann; Syed Irfan Bukhari; Andrew Law; Maya Sangesland; Irit Gat-Viks; Paul Digard; Shobha Vasudevan; Daniel Lingwood; David H Dockrell; John G Doench; J Kenneth Baillie; Nir Hacohen
Journal:  Nat Commun       Date:  2020-01-09       Impact factor: 14.919

8.  The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus.

Authors:  Abraham L Brass; I-Chueh Huang; Yair Benita; Sinu P John; Manoj N Krishnan; Eric M Feeley; Bethany J Ryan; Jessica L Weyer; Louise van der Weyden; Erol Fikrig; David J Adams; Ramnik J Xavier; Michael Farzan; Stephen J Elledge
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

9.  Genome-wide CRISPR/Cas9 Screen Identifies Host Factors Essential for Influenza Virus Replication.

Authors:  Julianna Han; Jasmine T Perez; Cindy Chen; Yan Li; Asiel Benitez; Matheswaran Kandasamy; Yoontae Lee; Jorge Andrade; Benjamin tenOever; Balaji Manicassamy
Journal:  Cell Rep       Date:  2018-04-10       Impact factor: 9.423

10.  Drosophila RNAi screen identifies host genes important for influenza virus replication.

Authors:  Linhui Hao; Akira Sakurai; Tokiko Watanabe; Ericka Sorensen; Chairul A Nidom; Michael A Newton; Paul Ahlquist; Yoshihiro Kawaoka
Journal:  Nature       Date:  2008-07-09       Impact factor: 49.962

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  8 in total

1.  A Glu-Glu-Tyr Sequence in the Cytoplasmic Tail of the M2 Protein Renders Influenza A Virus Susceptible to Restriction of the Hemagglutinin-M2 Association in Primary Human Macrophages.

Authors:  Sukhmani Bedi; Rajat Mudgal; Amanda Haag; Akira Ono
Journal:  J Virol       Date:  2022-09-13       Impact factor: 6.549

Review 2.  From high-throughput to therapeutic: host-directed interventions against influenza viruses.

Authors:  Joseph D Trimarco; Nicholas S Heaton
Journal:  Curr Opin Virol       Date:  2022-01-11       Impact factor: 7.121

Review 3.  The Contribution of Viral Proteins to the Synergy of Influenza and Bacterial Co-Infection.

Authors:  Miriam Mikušová; Karolína Tomčíková; Katarína Briestenská; František Kostolanský; Eva Varečková
Journal:  Viruses       Date:  2022-05-16       Impact factor: 5.818

Review 4.  Peering into Avian Influenza A(H5N8) for a Framework towards Pandemic Preparedness.

Authors:  Joshua Yi Yeo; Samuel Ken-En Gan
Journal:  Viruses       Date:  2021-11-15       Impact factor: 5.048

5.  Sequence-Specific Features of Short Double-Strand, Blunt-End RNAs Have RIG-I- and Type 1 Interferon-Dependent or -Independent Anti-Viral Effects.

Authors:  Abhilash Kannan; Maarit Suomalainen; Romain Volle; Michael Bauer; Marco Amsler; Hung V Trinh; Stefano Vavassori; Jana Pachlopnik Schmid; Guilherme Vilhena; Alberto Marín-González; Ruben Perez; Andrea Franceschini; Christian von Mering; Silvio Hemmi; Urs F Greber
Journal:  Viruses       Date:  2022-06-28       Impact factor: 5.818

6.  RNA Sequencing Demonstrates That Circular RNA Regulates Avian Influenza Virus Replication in Human Cells.

Authors:  Jie Min; Ying Cao; Haizhou Liu; Di Liu; Wenjun Liu; Jing Li
Journal:  Int J Mol Sci       Date:  2022-08-31       Impact factor: 6.208

Review 7.  Clearance or Hijack: Universal Interplay Mechanisms Between Viruses and Host Autophagy From Plants to Animals.

Authors:  Wenxian Wu; Xiumei Luo; Maozhi Ren
Journal:  Front Cell Infect Microbiol       Date:  2022-01-03       Impact factor: 5.293

8.  Restriction factor screening identifies RABGAP1L-mediated disruption of endocytosis as a host antiviral defense.

Authors:  Sonja Fernbach; Eva E Spieler; Idoia Busnadiego; Umut Karakus; Anouk Lkharrazi; Silke Stertz; Benjamin G Hale
Journal:  Cell Rep       Date:  2022-03-22       Impact factor: 9.423

  8 in total

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