Literature DB >> 20064372

A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.

Sagi D Shapira1, Irit Gat-Viks, Bennett O V Shum, Amelie Dricot, Marciela M de Grace, Liguo Wu, Piyush B Gupta, Tong Hao, Serena J Silver, David E Root, David E Hill, Aviv Regev, Nir Hacohen.   

Abstract

During the course of a viral infection, viral proteins interact with an array of host proteins and pathways. Here, we present a systematic strategy to elucidate the dynamic interactions between H1N1 influenza and its human host. A combination of yeast two-hybrid analysis and genome-wide expression profiling implicated hundreds of human factors in mediating viral-host interactions. These factors were then examined functionally through depletion analyses in primary lung cells. The resulting data point to potential roles for some unanticipated host and viral proteins in viral infection and the host response, including a network of RNA-binding proteins, components of WNT signaling, and viral polymerase subunits. This multilayered approach provides a comprehensive and unbiased physical and regulatory model of influenza-host interactions and demonstrates a general strategy for uncovering complex host-pathogen relationships. Copyright 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 20064372      PMCID: PMC2892837          DOI: 10.1016/j.cell.2009.12.018

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  34 in total

1.  Influenza B mutant viruses with truncated NS1 proteins grow efficiently in Vero cells and are immunogenic in mice.

Authors:  Nina Wressnigg; Anna Polina Shurygina; Thorsten Wolff; Monika Redlberger-Fritz; Therese Popow-Kraupp; Thomas Muster; Andrej Egorov; Christian Kittel
Journal:  J Gen Virol       Date:  2009-02       Impact factor: 3.891

2.  Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.

Authors:  Renate König; Yingyao Zhou; Daniel Elleder; Tracy L Diamond; Ghislain M C Bonamy; Jeffrey T Irelan; Chih-Yuan Chiang; Buu P Tu; Paul D De Jesus; Caroline E Lilley; Shannon Seidel; Amanda M Opaluch; Jeremy S Caldwell; Matthew D Weitzman; Kelli L Kuhen; Sourav Bandyopadhyay; Trey Ideker; Anthony P Orth; Loren J Miraglia; Frederic D Bushman; John A Young; Sumit K Chanda
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

3.  Influenza A virus NS1 targets the ubiquitin ligase TRIM25 to evade recognition by the host viral RNA sensor RIG-I.

Authors:  Michaela Ulrike Gack; Randy Allen Albrecht; Tomohiko Urano; Kyung-Soo Inn; I-Chueh Huang; Elena Carnero; Michael Farzan; Satoshi Inoue; Jae Ung Jung; Adolfo García-Sastre
Journal:  Cell Host Microbe       Date:  2009-05-08       Impact factor: 21.023

Review 4.  The multifunctional NS1 protein of influenza A viruses.

Authors:  Benjamin G Hale; Richard E Randall; Juan Ortín; David Jackson
Journal:  J Gen Virol       Date:  2008-10       Impact factor: 3.891

Review 5.  Innate immunity to virus infection.

Authors:  Osamu Takeuchi; Shizuo Akira
Journal:  Immunol Rev       Date:  2009-01       Impact factor: 12.988

6.  Identification of host proteins required for HIV infection through a functional genomic screen.

Authors:  Abraham L Brass; Derek M Dykxhoorn; Yair Benita; Nan Yan; Alan Engelman; Ramnik J Xavier; Judy Lieberman; Stephen J Elledge
Journal:  Science       Date:  2008-01-10       Impact factor: 47.728

Review 7.  Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Authors:  Frederic D Bushman; Nirav Malani; Jason Fernandes; Iván D'Orso; Gerard Cagney; Tracy L Diamond; Honglin Zhou; Daria J Hazuda; Amy S Espeseth; Renate König; Sourav Bandyopadhyay; Trey Ideker; Stephen P Goff; Nevan J Krogan; Alan D Frankel; John A T Young; Sumit K Chanda
Journal:  PLoS Pathog       Date:  2009-05-29       Impact factor: 6.823

Review 8.  Connecting viral with cellular interactomes.

Authors:  S M Bailer; J Haas
Journal:  Curr Opin Microbiol       Date:  2009-07-24       Impact factor: 7.934

9.  An empirical framework for binary interactome mapping.

Authors:  Kavitha Venkatesan; Jean-François Rual; Alexei Vazquez; Ulrich Stelzl; Irma Lemmens; Tomoko Hirozane-Kishikawa; Tong Hao; Martina Zenkner; Xiaofeng Xin; Kwang-Il Goh; Muhammed A Yildirim; Nicolas Simonis; Kathrin Heinzmann; Fana Gebreab; Julie M Sahalie; Sebiha Cevik; Christophe Simon; Anne-Sophie de Smet; Elizabeth Dann; Alex Smolyar; Arunachalam Vinayagam; Haiyuan Yu; David Szeto; Heather Borick; Amélie Dricot; Niels Klitgord; Ryan R Murray; Chenwei Lin; Maciej Lalowski; Jan Timm; Kirstin Rau; Charles Boone; Pascal Braun; Michael E Cusick; Frederick P Roth; David E Hill; Jan Tavernier; Erich E Wanker; Albert-László Barabási; Marc Vidal
Journal:  Nat Methods       Date:  2008-12-07       Impact factor: 28.547

10.  Drosophila RNAi screen identifies host genes important for influenza virus replication.

Authors:  Linhui Hao; Akira Sakurai; Tokiko Watanabe; Ericka Sorensen; Chairul A Nidom; Michael A Newton; Paul Ahlquist; Yoshihiro Kawaoka
Journal:  Nature       Date:  2008-07-09       Impact factor: 49.962

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  361 in total

1.  The cytosolic nucleic acid sensor LRRFIP1 mediates the production of type I interferon via a beta-catenin-dependent pathway.

Authors:  Pengyuan Yang; Huazhang An; Xingguang Liu; Mingyue Wen; Yuanyuan Zheng; Yaocheng Rui; Xuetao Cao
Journal:  Nat Immunol       Date:  2010-05-09       Impact factor: 25.606

Review 2.  Influenza A virus polymerase: structural insights into replication and host adaptation mechanisms.

Authors:  Stéphane Boivin; Stephen Cusack; Rob W H Ruigrok; Darren J Hart
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

3.  The PB2 subunit of the influenza virus RNA polymerase affects virulence by interacting with the mitochondrial antiviral signaling protein and inhibiting expression of beta interferon.

Authors:  Katy M Graef; Frank T Vreede; Yuk-Fai Lau; Amber W McCall; Simon M Carr; Kanta Subbarao; Ervin Fodor
Journal:  J Virol       Date:  2010-06-10       Impact factor: 5.103

4.  A role for the human nucleotide-binding domain, leucine-rich repeat-containing family member NLRC5 in antiviral responses.

Authors:  Andreas Neerincx; Katja Lautz; Maureen Menning; Elisabeth Kremmer; Paola Zigrino; Marianna Hösel; Hildegard Büning; Robert Schwarzenbacher; Thomas A Kufer
Journal:  J Biol Chem       Date:  2010-06-10       Impact factor: 5.157

Review 5.  Human pathogens and the host cell SUMOylation system.

Authors:  Peter Wimmer; Sabrina Schreiner; Thomas Dobner
Journal:  J Virol       Date:  2011-11-09       Impact factor: 5.103

6.  Receptor tyrosine kinase inhibitors that block replication of influenza a and other viruses.

Authors:  Naveen Kumar; Nishi R Sharma; Hinh Ly; Tristram G Parslow; Yuying Liang
Journal:  Antimicrob Agents Chemother       Date:  2011-09-19       Impact factor: 5.191

Review 7.  The contribution of animal models to the understanding of the host range and virulence of influenza A viruses.

Authors:  Christopher D O'Donnell; Kanta Subbarao
Journal:  Microbes Infect       Date:  2011-01-27       Impact factor: 2.700

Review 8.  Uncovering the global host cell requirements for influenza virus replication via RNAi screening.

Authors:  Silke Stertz; Megan L Shaw
Journal:  Microbes Infect       Date:  2011-01-27       Impact factor: 2.700

Review 9.  Reconstructing regulatory network transitions.

Authors:  Jalean J Petricka; Philip N Benfey
Journal:  Trends Cell Biol       Date:  2011-05-31       Impact factor: 20.808

10.  A genome wide RNA interference screening method to identify host factors that modulate influenza A virus replication.

Authors:  Christopher R Chin; Abraham L Brass
Journal:  Methods       Date:  2012-10-02       Impact factor: 3.608

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