| Literature DB >> 34551193 |
Xuewen Xiao1, Lina Guo1, Xinxin Liao2,3,4,5,6, Yafang Zhou2,3,4,5,6, Weiwei Zhang2,4,5,6,7, Lu Zhou1, Xin Wang1, Xixi Liu1, Hui Liu1, Tianyan Xu1, Yuan Zhu1, Qijie Yang1, Xiaoli Hao1, Yingzi Liu1, Junling Wang1,2,4,5,6, Jinchen Li2, Bin Jiao1,2,4,5,6, Lu Shen1,2,4,5,6,8.
Abstract
AIM: The role of vascular dementia (VaD)-associated genes in Alzheimer's disease (AD) remains elusive despite similar clinical and pathological features. We aimed to explore the relationship between these genes and AD in the Chinese population.Entities:
Keywords: Alzheimer's disease; Chinese population; genes; vascular dementia
Mesh:
Year: 2021 PMID: 34551193 PMCID: PMC8611771 DOI: 10.1111/cns.13730
Source DB: PubMed Journal: CNS Neurosci Ther ISSN: 1755-5930 Impact factor: 5.243
Demographic and clinical information of AD patients and controls
| AD | Control |
| |
|---|---|---|---|
| Number | 1192 | 2412 | — |
| Age (years), mean ± SD | 63.93 ± 11.18 | 64.76±7.77 | 0.06 |
| Gender (M/F) | 475/717 | 1157/1255 | 4.84 × 10−6
|
| MMSE, mean ± SD | 12.51 ± 6.77 | 26.80 ± 2.62 | 1.20 × 10−12
|
| MoCA, mean ± SD | 8.46 ± 5.13 | — | — |
| CDR, mean ± SD | 1.29 ± 0.70 | — | — |
| ADL, mean ± SD | 34.41 ± 12.69 | — | — |
| NPI, mean ± SD | 18.05 ± 16.13 | — | — |
Abbreviations: ADL, activities of daily living; CDR, Clinical Dementia Rating; MMSE, Mini‐Mental State Examination; MoCA, Montreal Cognitive Assessment; NPI, Neuropsychiatric Inventory; SD, standard deviation.
p‐Value was calculated by Mann–Whitney U test.
p‐Value was calculated by Chi‐squared test.
The nominal significant common variants between AD patients and controls
| Gene | Position | Rs ID | Region | Variant | Effect allele | MAF | OR (95% CI) | Adjusted | |
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||
|
| 13:110827574 | rs874203 | Exonic | c.3189A > T:p.R1063R | A | 0.320 | 0.293 | 1.144 (1.023–1.279) | 1.80 × 10−2 |
|
| 13:110827580 | rs874204 | Exonic | c.3183G > A:p.G1061G | T | 0.320 | 0.293 | 1.144 (1.023–1.279) | 1.84 × 10−2 |
|
| 13:110833702 | rs16975492 | Exonic | c.2130G > A:p.P710P | T | 0.315 | 0.289 | 1.138 (1.018–1.272) | 2.34 × 10−2 |
|
| 13:110843985 | rs1373744 | Exonic | c.1548A > G:p.Q516Q | T | 0.054 | 0.043 | 1.299 (1.025–1.646) | 3.05 × 10−2 |
Effect allele represents the minor allele.
Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; CI, confidence interval; MAF, minor allele frequency; OR, odds ratio.
FIGURE 1Linkage disequilibrium (LD) patterns of COL4A1 nominal significant common variants between AD and controls. The value in each square is equal to r 2 × 100
The nominal significant gene between AD patients and controls in the SKAT‐O test
| Classification | Gene | Location | Variant | AD ( | Control ( |
|---|---|---|---|---|---|
|
Rare missense variants (MAF < 0.01) |
| 10:124221572 | c.404C > A:p.A135D | 1 | 0 |
| 10:124221610 | c.442A > C:p.I148L | 0 | 1 | ||
| 10:124221614 | c.446T > C:p.V149A | 1 | 0 | ||
| 10:124248453 | c.508A > C:p.N170H | 1 | 0 | ||
| 10:124248467 | c.522C > G:p.D174E | 0 | 1 | ||
| 10:124248514 | c.569G > A:p.R190H | 0 | 1 | ||
| 10:124266349 | c.920T > C:p.L307P | 1 | 0 | ||
| 10:124266358 | c.929G > A:p.R310H | 1 | 0 | ||
| 10:124269651 | c.1160T > C:p.M387T | 1 | 0 | ||
| 10:124269662 | c.1171A > G:p.T391A | 1 | 1 | ||
| 10:124269665 | c.1174T > C:p.S392P | 2 | 0 | ||
| 10:124271508 | c.1201C > T:p.R401W | 2 | 3 | ||
| 10:124271513 | c.1206C > G:p.H402Q | 0 | 1 | ||
| 10:124273783 | c.1351G > A:p.V451I | 1 | 0 | ||
| Allele count/total number of alleles ( | 12/2384 | 8/4824 | |||
| Frequency (%) | 0.50 | 0.16 | |||
| Adjusted | 4.64×10−2 | ||||
Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; SKAT‐O, Sequence Kernel Association Test‐Optimal.
The nominal significant rare variants between AD patients and controls
| Gene | Position | Rs ID | Region | Variant | Effect allele | MAF | OR (95% CI) | Adjusted | |
|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||
|
| 19:15292599 | rs201436750 | Exonic | c.2580C > T:p.N860N | A | 0.003 | 0.001 | 5.465 (1.338–22.320) | 1.80 × 10−2 |
|
| 13:110843966 | rs747972545 | UTR3 | c.*7C > T | A | 0.005 | 0.003 | 2.516 (1.154–5.485) | 2.03 × 10−2 |
|
| 13:110857762 | rs201481886 | Intronic | — | A | 0.002 | 0.006 | 0.293 (0.101–0.851) | 2.41 × 10−2 |
|
| 20:23616002 | rs765692764 | Exonic | c.246C > T:p.I82I | A | 0.003 | 0.001 | 4.055 (1.156–14.220) | 2.87 × 10−2 |
|
| 20:23609225 | rs140837441 | UTR3 | c.*880G > C | G | 0.003 | 0.001 | 4.330 (1.043–17.970) | 4.36 × 10−2 |
Effect allele represents the minor allele.
Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; CI, confidence interval; OR, odds ratio; UTR, untranslated region.
The nominal significant variants in AAO and MMSE association studies
| Classification | Gene | Position | Rs ID | Region | Variant | Effect allele | BETA (95% CI) | Adjusted |
|---|---|---|---|---|---|---|---|---|
| AAO association study |
| 9:124094800 | rs9102 | Exonic | c.2166T > C:p.F722F | C | 1.665 (0.329–3.001) | 1.47 × 10−2 |
|
| 13:48807577 | rs11556899 | Exonic | c.81C > T:p.L27L | T | 2.230 (0.263–4.196) | 2.65 × 10−2 | |
|
| 13:110859069 | rs9588116 | Intronic | — | C | −1.093 (−2.135‐−0.051) | 4.01 × 10−2 | |
|
| 13:110861785 | rs645114 | Intronic | — | C | 1.083 (0.040–2.127) | 4.20 × 10−2 | |
|
| 13:110866265 | rs9521650 | Intronic | — | A | 1.089 (0.024–2.154) | 4.53 × 10−2 | |
| MMSE association study |
| 13:48807577 | rs11556899 | Exonic | c.81C > T:p.L27L | T | 1.565 (0.209–2.921) | 2.40 × 10−2 |
|
| 9:124048461 | rs12343736 | Exonic | c.40T > C:p.W14R | C | −1.068 (−2.050‐−0.087) | 3.32 × 10−2 | |
|
| 9:124065224 | rs2230287 | Exonic | c.283G > A:p.A95T | A | −1.027 (−2.010‐−0.043) | 4.12 × 10−2 |
Effect allele represents the minor allele.
Abbreviations: AAO, age at onset; adjusted p, adjusted by age, gender, and APOE ε4 status; BETA, log (odds ratio); CI, confidence interval; MMSE, Mini‐Mental State Examination.