Literature DB >> 34551193

The role of vascular dementia associated genes in patients with Alzheimer's disease: A large case-control study in the Chinese population.

Xuewen Xiao1, Lina Guo1, Xinxin Liao2,3,4,5,6, Yafang Zhou2,3,4,5,6, Weiwei Zhang2,4,5,6,7, Lu Zhou1, Xin Wang1, Xixi Liu1, Hui Liu1, Tianyan Xu1, Yuan Zhu1, Qijie Yang1, Xiaoli Hao1, Yingzi Liu1, Junling Wang1,2,4,5,6, Jinchen Li2, Bin Jiao1,2,4,5,6, Lu Shen1,2,4,5,6,8.   

Abstract

AIM: The role of vascular dementia (VaD)-associated genes in Alzheimer's disease (AD) remains elusive despite similar clinical and pathological features. We aimed to explore the relationship between these genes and AD in the Chinese population.
METHODS: Eight VaD-associated genes were screened by a targeted sequencing panel in a sample of 3604 individuals comprising 1192 AD patients and 2412 cognitively normal controls. Variants were categorized into common variants and rare variants according to minor allele frequency (MAF). Common variant (MAF ≥ 0.01)-based association analysis was conducted by PLINK 1.9. Rare variant (MAF < 0.01) association study and gene-based aggregation testing of rare variants were performed by PLINK 1.9 and Sequence Kernel Association Test-Optimal (SKAT-O test), respectively. Age at onset (AAO) and Mini-Mental State Examination (MMSE) association studies were performed with PLINK 1.9. Analyses were adjusted for age, gender, and APOE ε4 status.
RESULTS: Four common COL4A1 variants, including rs874203, rs874204, rs16975492, and rs1373744, exhibited suggestive associations with AD. Five rare variants, NOTCH3 rs201436750, COL4A1 rs747972545, COL4A1 rs201481886, CST3 rs765692764, and CST3 rs140837441, showed nominal association with AD risk. Gene-based aggregation testing revealed that HTRA1 was nominally associated with AD. In the AAO and MMSE association studies, variants in GSN, ITM2B, and COL4A1 reached suggestive significance.
CONCLUSION: Common variants in COL4A1 and rare variants in HTRA1, NOTCH3, COL4A1, and CST3 may be implicated in AD pathogenesis. Besides, GSN, ITM2B, and COL4A1 are probably involved in the development of AD endophenotypes.
© 2021 The Authors. CNS Neuroscience & Therapeutics published by John Wiley & Sons Ltd.

Entities:  

Keywords:  Alzheimer's disease; Chinese population; genes; vascular dementia

Mesh:

Year:  2021        PMID: 34551193      PMCID: PMC8611771          DOI: 10.1111/cns.13730

Source DB:  PubMed          Journal:  CNS Neurosci Ther        ISSN: 1755-5930            Impact factor:   5.243


INTRODUCTION

Dementia is characterized by progressive cognitive impairment and ultimately impaired independent living. The number of dementia cases was estimated at 50 million in 2018 and is expected to triple by 2050. In China, about 15 million individuals aged 60 years or older have dementia, imposing a huge burden on society and family. Alzheimer's disease (AD) is the most prevalent dementia type worldwide, accounting for approximately 60%–80% of all dementia cases. The etiology and pathology of AD are complex and remain elusive. In addition to AD, vascular dementia (VaD) is another major subtype of dementia and accounts for 15%–20% of dementia patients in Western countries. VaD refers to dementia caused mainly by vascular pathology. Typically, patients with VaD present with memory problems and executive dysfunction. It is estimated that around 30% of dementia cases are diagnosed as VaD in Asia. Vascular pathology coexists in a large proportion of AD cases and reduces the threshold for dementia. Emerging evidence implicates cerebral microbleeds, white matter lesions, increased blood–brain barrier permeability, attenuated cerebral blood flow, and diminished neurovascular coupling in the development of AD. , , Microvascular alterations, such as increased capillary tortuosity and capillary rarefaction, also exist in AD brains. Additionally, epidemiological studies suggested that AD and VaD share similar risk factors, including hypertension, obesity, and diabetes. Vascular risk factors contribute to increased amyloid precursor protein processing and reduce amyloid beta (Aβ) clearance. Given that AD and VaD exhibit overlapping pathological changes and share similar clinical features, genetic studies may provide the underlying biological links between them. Previous studies have demonstrated that VaD‐associated genes were implicated in AD risk. For example, the NOTCH3 gene was associated with AD using the c‐alpha test in the United Kingdom and North America. NOTCH3 rs149307620, a missense variant, was enriched in AD patients compared to controls in individuals of European ancestry. However, NOTCH3 was not associated with AD risk in the Chinese population. , To illustrate the role of VaD‐associated genes in the pathogenesis of AD, we comprehensively investigated the associations between these genes and AD risk in a large Chinese cohort via a targeted sequencing panel.

METHODS

Participants

Our study recruited 1192 AD patients from Xiangya Hospital and 2412 cognitively normal controls from a community in Changsha. AD patients were diagnosed as probable AD by two expert neurologists according to the National Institute on Aging‐Alzheimer's Association criteria for probable AD. Participants with causative mutations for AD, VaD, and FTD (including C9orf72) had been excluded by Sanger sequencing or repeat‐prime PCR (RP‐PCR) analysis. This study was approved by the Ethics Committee of Xiangya Hospital, Central South University, China. Written informed consent was obtained from each participant or guardian.

Genomic DNA isolation

Using phenol–chloroform extraction and ethanol precipitation, genomic DNA was extracted from the peripheral blood leukocytes of each individual. The quality and quantity of DNA were assessed with a NanoDrop spectrophotometer (Thermo Scientific). All DNA samples were diluted to 50–100 ng/μl.

Gene selection

A detailed literature search in PubMed was manually conducted to select genes associated with VaD. The candidate genes were selected with more than one of the following features: (1) involved in the pathogenesis of VaD; (2) relationship with AD remains controversial; (3) plays role in AD development, such as Aβ metabolism. Eight VaD‐associated genes, NOTCH3, HTRA1, TREX1, GLA, COL4A1, CST3, GSN, and ITM2B, were finally seclected. , , , ,

Targeted gene sequencing

The targeted sequencing panel comprised eight VaD‐associated genes, namely NOTCH3, HTRA1, TREX1, GLA, COL4A1, CST3, GSN, and ITM2B. Using Biorupter Pico, the genomic DNA was broken into 150–200‐bp length fragments, followed by end‐repairing, A‐tailing, adaptor ligation, and an 11‐cycle pre‐capture PCR amplification. The fragmented DNA was captured by the targeted panel and sequenced on Illumina NovaSeq 6000 platform. The low‐quality reads fastq data were discarded by FastQC (http://www.bioinformatics.babraham.ac.uk/projects/fastqc/). The paired‐end sequence reads were aligned to the human reference genome (UCSC hg19/GRCH37) using the BWA software (version 0.7.15, http://bio‐bwa.sourceforge.net). Duplicate sequence reads were removed by Picard (version 2.18.7, http://broadinstitute.github.io/picard/). The quality‐score recalibration, local realignments, and variant calling were performed by the Genome Analysis Toolkit (version 3.2, https://software.broadinstitute.org/gatk/).  Variants were annotated using ANNOVAR (https://hpc.nih.gov/apps/ANNOVAR.html). Based on minor allele frequencies (MAF), variants were categorized as common or rare variants (common variants: MAF ≥0.01; rare variants: MAF <0.01). Furthermore, ReVe was used to predict the pathogenicity of missense variants. In our study, the damaging variants were defined as loss‐of‐function (LoF) variants or missense variants with ReVe >0.7. LoF variants included the variants resulting in stop, frameshift, or splice‐site disruption. The variants were named based on the guidelines of the Human Genome Variation Society.

Statistical analysis

With the use of PLINK 1.9, we filtered out the following variants with genotyping rate <95%, Hardy–Weinberg equilibrium p‐value <1 × 10−6 in controls, genotype quality (GQ) ≤20, allelic balance departing from 25%/75% ratio of referent and alternate allele reads in the heterozygote, and allelic balance departing from 95% ratio of the homozygote. We performed the common variant‐based association analysis between 1192 AD patients and 2412 cognitively normal controls using PLINK 1.9. Age, gender, and APOE ε4 status (APOE ε4+, APOE ε4−) were adjusted for each common variant. Furthermore, we also performed age at onset (AAO) and Mini‐Mental State Examination (MMSE) association studies in AD patients using the linear regression models in PLINK 1.9. Additionally, using the Sequence Kernel Association Test‐Optimal (SKAT‐O test), gene‐based association tests were conducted by combining rare variants between AD patients and cognitively normal controls. Rare variants were further categorized as followings: rare damaging variants (MAF <0.01, LoF or ReVe >0.7), rare damaging missense variants (MAF <0.01, ReVe >0.7), rare LoF variants (MAF <0.01, LoF), and rare missense variants (MAF <0.01, missense). Age, gender, and APOE ε4 status were also adjusted by SKAT‐O. Besides, the rare variants association studies were also conducted using PLINK 1.9. A cutoff p‐value * n < 0.05 was considered statistically significant based on Bonferroni correction (n is defined by the number of common variants or genes). Variants or genes not surviving the Bonferroni correction, but with uncorrected p‐values less than 0.05, were considered “suggestive.”

VaD genes in the Chinese and European populations

To further investigate the role of VaD genes in the Chinese and European populations, we searched them in AD patients from the webserver AlzData, , a freely accessible database in the Chinese population (http://www.alzdata.org/). Meanwhile, the suggestive common variants between AD and controls were also searched in a recent large meta‐genome‐wide association study (GWAS) in the European population.

RESULTS

Demographic and clinical information

Our study enrolled 1192 AD patients and 2412 cognitively normal controls. The average onset age of AD patients was 63.93 years old, and the average age of controls was 64.76 years old. There was no significant age difference between AD patients and controls (p = 0.06). The MMSE scores of AD patients were statistically higher than those of controls (p = 4.84×10−6). All participants were of southern Han Chinese ancestry (Table 1).
TABLE 1

Demographic and clinical information of AD patients and controls

ADControl p Value
Number11922412
Age (years), mean ± SD63.93 ± 11.1864.76±7.770.06 a
Gender (M/F)475/7171157/12554.84 × 10−6 b
MMSE, mean ± SD12.51 ± 6.7726.80 ± 2.621.20 × 10−12 a
MoCA, mean ± SD8.46 ± 5.13
CDR, mean ± SD1.29 ± 0.70
ADL, mean ± SD34.41 ± 12.69
NPI, mean ± SD18.05 ± 16.13

Abbreviations: ADL, activities of daily living; CDR, Clinical Dementia Rating; MMSE, Mini‐Mental State Examination; MoCA, Montreal Cognitive Assessment; NPI, Neuropsychiatric Inventory; SD, standard deviation.

p‐Value was calculated by Mann–Whitney U test.

p‐Value was calculated by Chi‐squared test.

Demographic and clinical information of AD patients and controls Abbreviations: ADL, activities of daily living; CDR, Clinical Dementia Rating; MMSE, Mini‐Mental State Examination; MoCA, Montreal Cognitive Assessment; NPI, Neuropsychiatric Inventory; SD, standard deviation. p‐Value was calculated by Mann–Whitney U test. p‐Value was calculated by Chi‐squared test.

Common variant association analysis

Forty common variants remained after quality control, including 22 COL4A1 variants, 11 NOTCH3 variants, five GSN variants, one HTRA1 variant, and one ITM2B variant. These variants were located within exons (62.5%, 25/40), introns (35.0%, 14/40), and 3′‐untranslated regions (3′‐UTRs; 2.5%, 1/40). In the single common variant association test, four COL4A1 variants were nominally associated with AD risk after the adjustment of age, gender, and APOE ε4 status, including rs874203 (p = 1.80 × 10−2), rs874204 (p = 1.84 × 10−2), rs16975492 (p = 2.34 × 10−2), and rs1373744 (p = 3.05 × 10−2) (Table 2). Nevertheless, after the Bonferroni correction, all these signals were diminished and no longer significant (p > 0.00125). The LD patterns of the COL4A1 variants (rs874203‐rs874204‐rs16975492‐rs1373744) were similar between AD patients and controls (Figure 1). No nominally significant associations were found between the four COL4A1 variants and AD in a large meta‐GWAS study in the European population (p > 0.05).
TABLE 2

The nominal significant common variants between AD patients and controls

GenePositionRs IDRegionVariantEffect alleleMAFOR (95% CI)Adjusted p
CaseControl
COL4A1 13:110827574rs874203Exonicc.3189A > T:p.R1063RA0.3200.2931.144 (1.023–1.279)1.80 × 10−2
COL4A1 13:110827580rs874204Exonicc.3183G > A:p.G1061GT0.3200.2931.144 (1.023–1.279)1.84 × 10−2
COL4A1 13:110833702rs16975492Exonicc.2130G > A:p.P710PT0.3150.2891.138 (1.018–1.272)2.34 × 10−2
COL4A1 13:110843985rs1373744Exonicc.1548A > G:p.Q516QT0.0540.0431.299 (1.025–1.646)3.05 × 10−2

Effect allele represents the minor allele.

Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; CI, confidence interval; MAF, minor allele frequency; OR, odds ratio.

FIGURE 1

Linkage disequilibrium (LD) patterns of COL4A1 nominal significant common variants between AD and controls. The value in each square is equal to r 2 × 100

The nominal significant common variants between AD patients and controls Effect allele represents the minor allele. Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; CI, confidence interval; MAF, minor allele frequency; OR, odds ratio. Linkage disequilibrium (LD) patterns of COL4A1 nominal significant common variants between AD and controls. The value in each square is equal to r 2 × 100

Rare variant aggregation testing

Gene‐based aggregation testing was performed by combining the rare variants within genes. In the rare missense variants group, although the association was nonsignificant after the Bonferroni correction, we observed a suggestive association of HTRA1 with AD. Specifically, 0.50% of the AD cases and only 0.16% of the controls carried HTRA1 missense variants (p = 4.64 × 10–2) (Table 3). In the remaining three groups, including rare damaging variants, rare damaging missense variants, and rare LoF variants, none of the VaD‐associated genes were correlated with AD risk (p > 0.05). Additionally, we conducted single rare variant association studies in our cohort. After quality control, 944 rare variants were included in the analysis. None of them reached statistical significance after the Bonferroni correction. Among them, five rare variants showed nominal associations with AD risk, namely NOTCH3 rs201436750 (p = 1.80 × 10−2), COL4A1 rs747972545 (p = 2.03 × 10−2), COL4A1 rs201481886 (p = 2.41 × 10−2), CST3 rs765692764 (p = 2.87 × 10−2), and CST3 rs140837441 (p = 4.36 × 10−2) (Table 4).
TABLE 3

The nominal significant gene between AD patients and controls in the SKAT‐O test

ClassificationGeneLocationVariantAD (n)Control (n)

Rare missense variants

(MAF < 0.01)

HTRA1 10:124221572c.404C > A:p.A135D10
10:124221610c.442A > C:p.I148L01
10:124221614c.446T > C:p.V149A10
10:124248453c.508A > C:p.N170H10
10:124248467c.522C > G:p.D174E01
10:124248514c.569G > A:p.R190H01
10:124266349c.920T > C:p.L307P10
10:124266358c.929G > A:p.R310H10
10:124269651c.1160T > C:p.M387T10
10:124269662c.1171A > G:p.T391A11
10:124269665c.1174T > C:p.S392P20
10:124271508c.1201C > T:p.R401W23
10:124271513c.1206C > G:p.H402Q01
10:124273783c.1351G > A:p.V451I10
Allele count/total number of alleles (n/n)12/23848/4824
Frequency (%)0.500.16
Adjusted p (SKAT‐O)4.64×10−2

Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; SKAT‐O, Sequence Kernel Association Test‐Optimal.

TABLE 4

The nominal significant rare variants between AD patients and controls

GenePositionRs IDRegionVariantEffect alleleMAFOR (95% CI)Adjusted p
CaseControl
NOTCH3 19:15292599rs201436750Exonicc.2580C > T:p.N860NA0.0030.0015.465 (1.338–22.320)1.80 × 10−2
COL4A1 13:110843966rs747972545UTR3c.*7C > TA0.0050.0032.516 (1.154–5.485)2.03 × 10−2
COL4A1 13:110857762rs201481886IntronicA0.0020.0060.293 (0.101–0.851)2.41 × 10−2
CST3 20:23616002rs765692764Exonicc.246C > T:p.I82IA0.0030.0014.055 (1.156–14.220)2.87 × 10−2
CST3 20:23609225rs140837441UTR3c.*880G > CG0.0030.0014.330 (1.043–17.970)4.36 × 10−2

Effect allele represents the minor allele.

Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; CI, confidence interval; OR, odds ratio; UTR, untranslated region.

The nominal significant gene between AD patients and controls in the SKAT‐O test Rare missense variants (MAF < 0.01) Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; SKAT‐O, Sequence Kernel Association Test‐Optimal. The nominal significant rare variants between AD patients and controls Effect allele represents the minor allele. Abbreviations: adjusted p, adjusted by age, gender, and APOE ε4 status; CI, confidence interval; OR, odds ratio; UTR, untranslated region.

AAO and MMSE association studies

We performed AAO and MMSE association studies to elucidate the relationships between VaD‐associated genes and AD endophenotypes. In the AAO association study, although no variants reached statistical significance after the Bonferroni correction, five variants were nominally associated with AD, including GSN rs9102 (p = 1.47 × 10−2), ITM2B rs11556899 (p = 2.65 × 10−2), COL4A1 rs9588116 (p = 4.01 × 10−2), COL4A1 rs645114 (p = 4.20 × 10−2), and COL4A1 rs9521650 (p = 4.53 × 10−2). MMSE association study revealed that three variants showed suggestive associations with AD, namely ITM2B rs11556899 (p = 2.40 × 10−2), GSN rs12343736 (p = 3.32 × 10−2), and GSN rs2230287 (p = 4.12 × 10−2) (Table 5).
TABLE 5

The nominal significant variants in AAO and MMSE association studies

ClassificationGenePositionRs IDRegionVariantEffect alleleBETA (95% CI)Adjusted p
AAO association study GSN 9:124094800rs9102Exonicc.2166T > C:p.F722FC1.665 (0.329–3.001)1.47 × 10−2
ITM2B 13:48807577rs11556899Exonicc.81C > T:p.L27LT2.230 (0.263–4.196)2.65 × 10−2
COL4A1 13:110859069rs9588116IntronicC−1.093 (−2.135‐−0.051)4.01 × 10−2
COL4A1 13:110861785rs645114IntronicC1.083 (0.040–2.127)4.20 × 10−2
COL4A1 13:110866265rs9521650IntronicA1.089 (0.024–2.154)4.53 × 10−2
MMSE association study ITM2B 13:48807577rs11556899Exonicc.81C > T:p.L27LT1.565 (0.209–2.921)2.40 × 10−2
GSN 9:124048461rs12343736Exonicc.40T > C:p.W14RC−1.068 (−2.050‐−0.087)3.32 × 10−2
GSN 9:124065224rs2230287Exonicc.283G > A:p.A95TA−1.027 (−2.010‐−0.043)4.12 × 10−2

Effect allele represents the minor allele.

Abbreviations: AAO, age at onset; adjusted p, adjusted by age, gender, and APOE ε4 status; BETA, log (odds ratio); CI, confidence interval; MMSE, Mini‐Mental State Examination.

The nominal significant variants in AAO and MMSE association studies Effect allele represents the minor allele. Abbreviations: AAO, age at onset; adjusted p, adjusted by age, gender, and APOE ε4 status; BETA, log (odds ratio); CI, confidence interval; MMSE, Mini‐Mental State Examination.

VaD genes in the AlzData database

The association results for rare coding and damaging variants were available in the AlzData database from the whole‐exome sequencing data of Chinese AD patients. Eight VaD‐associated genes were searched in AlzData. In total, we identified 13 variants in NOTCH3, one variant in HTRA1, three variants in TREX1, three variants in GSN, one variant in ITM2B in the AlzData. None of these variants exhibited associations with AD (p > 0.05).

DISCUSSION

In our study, to explore the role of VaD‐associated genes in AD, eight VaD‐associated genes were screened in a large cohort of AD patients in the Chinese population. We found that the common variants in COL4A1 were nominally associated with AD. Gene‐based aggregation testing revealed a suggestive association of HTRA1 with AD. Five rare variants in NOTCH3, COL4A1, and CST3 showed nominal associations with AD risk. AAO and MMSE association studies demonstrated that variants in GSN, ITM2B, and COL4A1 reached suggestive significance. VaD refers to a variety of cerebrovascular diseases resulting in cognitive impairment. Multiple genes were associated with VaD, such as NOTCH3, HTRA1, GLA, and COL4A1. The widely recognized pathological changes include hemorrhages, infarcts, white matter injury, and ischemic brain injury, which were not specific to VaD but also seen in AD. Accumulating evidence demonstrated that alterations in small or large cerebral vessels were implicated in the development of AD. , AD polygenic risk scores were associated with VaD pathological changes, including lobar cerebral microbleeds, white matter lesion load, and artery calcification. These studies suggested that AD and VaD overlap pathologically and genetically. Our study found that four COL4A1 common variants were nominally associated with AD risk. COL4A1, located on chromosome 13q34, encodes the α1 chain of type IV collagen. In 2005, COL4A1 mutations were identified to segregate with human familial porencephaly. Later, it was recognized that these mutations cause a spectrum of cerebrovascular diseases, ranging from small‐vessel disease to intraparenchymal hemorrhage. , A 3′UTR mutation of COL4A1 caused hereditary multi‐infarct dementia in a Swedish family. Type IV collagen is a major component of the vascular basement membrane, and COL4A1 mutations may lead to cortical malformations via vascular insults. It has been speculated that COL4A1 mutations perhaps provoke inflammatory reactions and trigger damage to blood vessels, ultimately leading to Aβ deposition. In a Chinese cohort, the COL4A1 variant rs3742207 exhibited a marginal association with AD. Our study showed that COL4A1 rs874203, rs874204, rs16975492, and rs1373744 were nominally associated with AD risk. For the first time, these variants were identified to be potential contributors to the development of AD in the Chinese population. In the European population, these four COL4A1 variants showed no associations with AD, which may indicate that they may be Chinese‐specific. However, this result should be interpreted with caution and requires validation in other large Chinese cohorts. Gene‐based aggregation testing revealed that HTRA1 exhibited a suggestive association with AD. HTRA1 is located on chromosome 10q (10q25.3‐q26.2). To date, at least 22 mutations in HTRA1 have been identified to cause cerebral autosomal recessive arteriopathy with subcortical infarcts and leukoencephalopathy (CARASIL) in an autosomal recessive form. Most of these mutations potentially lead to increased IGF‐β signaling activity and a reduced level of protease activity, resulting in the degeneration of smooth muscle cells. Moreover, a significant association was observed between HTRA1 rs2293871 and cerebral small vessel disease in the elderly. In 5xFAD mouse analysis and human brain mass spectrometry, HTRA1 was correlated with Aβ levels. Specifically, HTRA1 is involved in Aβ metabolism by degrading fragments of amyloid precursor protein. In the Finland cohort, no significant associations of the HTRA1 SNPs with AD were observed. In our study, aggregated rare missense variants of HTRA1 were nominally associated with AD. Although further studies are warranted to replicate the role of HTRA1 in AD, our finding indicated that HTRA1 may exert an effect in the pathogenesis of AD. The single rare variant association study revealed that five variants were suggestively associated with AD, including variants in NOTCH3, COL4A1, and CST3. Mutations in NOTCH3 can lead to cerebral autosomal dominant arteriopathy with subcortical infarcts and leukoencephalopathy (CADASIL), the most frequent hereditary cerebral small vessel disease characterized by dementia and stroke. In a South East Asian cohort, four rare missense variants in NOTCH3 were marginally associated with AD susceptibility. We identified that a rare variant in NOTCH3 achieved suggestive evidence of association with AD, suggesting that NOTCH3 may confer genetic susceptibility to AD in the Chinese population. Mutations in CST3 can cause amyloidosis characterized by deposition of abnormal protein fibrils. , A meta‐analysis showed that the G73A variant of CST3 was associated with AD risk in Caucasian populations but not in Asians. Our study revealed that two rare variants in CST3 were suggestively associated with AD, indicating that CST3 may also be a risk gene for AD in the Chinese population. Substantial evidence indicates that genetic risk factors are involved in AD endophenotypes. , To investigate the role of VaD‐associated genes in AD endophenotypes, we performed AAO and MMSE association studies. We found that variants in GSN, ITM2B, and COL4A1 were nominally associated with AAO and that variants in GSN and ITM2B exhibited suggestive associations with MMSE scores. Mutations of GSN and ITM2B have been identified as the causes of hereditary amyloidosis. The GSN gene encodes gelsolin, which can attenuate the fibrillization of Aβ. Compared to controls, the plasma GSN levels were significantly declined and positively correlated with MMSE scores in AD patients. Interestingly, our previous study demonstrated that mutations in GSN may contribute to the pathogenesis of AD. This present study revealed that variants in GSN were suggestively correlated not only with AAO but also with MMSE scores, further implicating the GSN gene in AD development. ITM2B gene encodes integral membrane protein 2B, which can interact with Aβ‐precursor protein and inhibit its processing. Mutations in ITM2B can also lead to rare familial dementias via presynaptic and postsynaptic dysfunction. Our analysis firstly identified that ITM2B variants were marginally associated with AAO and MMSE scores in AD patients, indicating that the ITM2B gene may play a role in the pathogenesis of AD. The nominally significant variants or genes we found have not been reported previously in the AlzData or other Chinese GWASs. , Several reasons may contribute to this. First, previous GWASs in the Chinese population focused on variants or genes reaching genome‐wide significance. However, our study only identified suggestive variants or genes that previous studies may not have reported. Second, the Chinese population can be divided into seven population clusters based on principal component analysis. The sample in our study is mainly from South China, and the diversity of sample sources in China may have resulted in other studies giving different results. Third, differences in sequencing methods between this and previous studies may lead to different findings. Last, although our sample size is large, it is still limited, which may lead to false‐positive or false‐negative results. In summary, we investigated the role of VaD‐associated genes in AD by comparing AD patients and controls in a large Chinese cohort. The common variant association test demonstrated that COL4A1 rs874203, rs874204, rs16975492, and rs1373744 were nominally associated with AD. Rare variants in HTRA1, NOTCH3, COL4A1, and CST3 may also contribute to the etiology of AD. AAO and MMSE association studies implicated variants in GSN, ITM2B, and COL4A1 in AD endophenotypes.

CONFLICT OF INTEREST

The authors declare that there is no conflict of interest associated with the contents of this article.
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Journal:  Ann Neurol       Date:  2006-02       Impact factor: 10.422

5.  C-terminal truncations in human 3'-5' DNA exonuclease TREX1 cause autosomal dominant retinal vasculopathy with cerebral leukodystrophy.

Authors:  Anna Richards; Arn M J M van den Maagdenberg; Joanna C Jen; David Kavanagh; Paula Bertram; Dirk Spitzer; M Kathryn Liszewski; Maria-Louise Barilla-Labarca; Gisela M Terwindt; Yumi Kasai; Mike McLellan; Mark Gilbert Grand; Kaate R J Vanmolkot; Boukje de Vries; Jijun Wan; Michael J Kane; Hafsa Mamsa; Ruth Schäfer; Anine H Stam; Joost Haan; Paulus T V M de Jong; Caroline W Storimans; Mary J van Schooneveld; Jendo A Oosterhuis; Andreas Gschwendter; Martin Dichgans; Katya E Kotschet; Suzanne Hodgkinson; Todd A Hardy; Martin B Delatycki; Rula A Hajj-Ali; Parul H Kothari; Stanley F Nelson; Rune R Frants; Robert W Baloh; Michel D Ferrari; John P Atkinson
Journal:  Nat Genet       Date:  2007-07-29       Impact factor: 38.330

Review 6.  Alzheimer's disease.

Authors:  Philip Scheltens; Bart De Strooper; Miia Kivipelto; Henne Holstege; Gael Chételat; Charlotte E Teunissen; Jeffrey Cummings; Wiesje M van der Flier
Journal:  Lancet       Date:  2021-03-02       Impact factor: 79.321

Review 7.  Alzheimer's Disease and Vascular Aging: JACC Focus Seminar.

Authors:  Marta Cortes-Canteli; Costantino Iadecola
Journal:  J Am Coll Cardiol       Date:  2020-03-03       Impact factor: 24.094

8.  Relation of cerebral vessel disease to Alzheimer's disease dementia and cognitive function in elderly people: a cross-sectional study.

Authors:  Zoe Arvanitakis; Ana W Capuano; Sue E Leurgans; David A Bennett; Julie A Schneider
Journal:  Lancet Neurol       Date:  2016-06-14       Impact factor: 44.182

9.  Mendelian adult-onset leukodystrophy genes in Alzheimer's disease: critical influence of CSF1R and NOTCH3.

Authors:  Celeste Sassi; Michael A Nalls; Perry G Ridge; Jesse R Gibbs; Michelle K Lupton; Claire Troakes; Katie Lunnon; Safa Al-Sarraj; Kristelle S Brown; Christopher Medway; Jenny Lord; James Turton; Jose Bras; Sonja Blumenau; Mareike Thielke; Christa Josties; Dorette Freyer; Annette Dietrich; Monia Hammer; Michael Baier; Ulrich Dirnagl; Kevin Morgan; John F Powell; John S Kauwe; Carlos Cruchaga; Alison M Goate; Andrew B Singleton; Rita Guerreiro; Angela Hodges; John Hardy
Journal:  Neurobiol Aging       Date:  2018-02-02       Impact factor: 4.673

10.  Common variants in Alzheimer's disease and risk stratification by polygenic risk scores.

Authors:  Itziar de Rojas; Sonia Moreno-Grau; Niccolo Tesi; Benjamin Grenier-Boley; Victor Andrade; Iris E Jansen; Nancy L Pedersen; Najada Stringa; Anna Zettergren; Isabel Hernández; Laura Montrreal; Carmen Antúnez; Anna Antonell; Rick M Tankard; Joshua C Bis; Rebecca Sims; Céline Bellenguez; Inés Quintela; Antonio González-Perez; Miguel Calero; Emilio Franco-Macías; Juan Macías; Rafael Blesa; Laura Cervera-Carles; Manuel Menéndez-González; Ana Frank-García; Jose Luís Royo; Fermin Moreno; Raquel Huerto Vilas; Miquel Baquero; Mónica Diez-Fairen; Carmen Lage; Sebastián García-Madrona; Pablo García-González; Emilio Alarcón-Martín; Sergi Valero; Oscar Sotolongo-Grau; Abbe Ullgren; Adam C Naj; Afina W Lemstra; Alba Benaque; Alba Pérez-Cordón; Alberto Benussi; Alberto Rábano; Alessandro Padovani; Alessio Squassina; Alexandre de Mendonça; Alfonso Arias Pastor; Almar A L Kok; Alun Meggy; Ana Belén Pastor; Ana Espinosa; Anaïs Corma-Gómez; Angel Martín Montes; Ángela Sanabria; Anita L DeStefano; Anja Schneider; Annakaisa Haapasalo; Anne Kinhult Ståhlbom; Anne Tybjærg-Hansen; Annette M Hartmann; Annika Spottke; Arturo Corbatón-Anchuelo; Arvid Rongve; Barbara Borroni; Beatrice Arosio; Benedetta Nacmias; Børge G Nordestgaard; Brian W Kunkle; Camille Charbonnier; Carla Abdelnour; Carlo Masullo; Carmen Martínez Rodríguez; Carmen Muñoz-Fernandez; Carole Dufouil; Caroline Graff; Catarina B Ferreira; Caterina Chillotti; Chandra A Reynolds; Chiara Fenoglio; Christine Van Broeckhoven; Christopher Clark; Claudia Pisanu; Claudia L Satizabal; Clive Holmes; Dolores Buiza-Rueda; Dag Aarsland; Dan Rujescu; Daniel Alcolea; Daniela Galimberti; David Wallon; Davide Seripa; Edna Grünblatt; Efthimios Dardiotis; Emrah Düzel; Elio Scarpini; Elisa Conti; Elisa Rubino; Ellen Gelpi; Eloy Rodriguez-Rodriguez; Emmanuelle Duron; Eric Boerwinkle; Evelyn Ferri; Fabrizio Tagliavini; Fahri Küçükali; Florence Pasquier; Florentino Sanchez-Garcia; Francesca Mangialasche; Frank Jessen; Gaël Nicolas; Geir Selbæk; Gemma Ortega; Geneviève Chêne; Georgios Hadjigeorgiou; Giacomina Rossi; Gianfranco Spalletta; Giorgio Giaccone; Giulia Grande; Giuliano Binetti; Goran Papenberg; Harald Hampel; Henri Bailly; Henrik Zetterberg; Hilkka Soininen; Ida K Karlsson; Ignacio Alvarez; Ildebrando Appollonio; Ina Giegling; Ingmar Skoog; Ingvild Saltvedt; Innocenzo Rainero; Irene Rosas Allende; Jakub Hort; Janine Diehl-Schmid; Jasper Van Dongen; Jean-Sebastien Vidal; Jenni Lehtisalo; Jens Wiltfang; Jesper Qvist Thomassen; Johannes Kornhuber; Jonathan L Haines; Jonathan Vogelgsang; Juan A Pineda; Juan Fortea; Julius Popp; Jürgen Deckert; Katharina Buerger; Kevin Morgan; Klaus Fließbach; Kristel Sleegers; Laura Molina-Porcel; Lena Kilander; Leonie Weinhold; Lindsay A Farrer; Li-San Wang; Luca Kleineidam; Lucia Farotti; Lucilla Parnetti; Lucio Tremolizzo; Lucrezia Hausner; Luisa Benussi; Lutz Froelich; M Arfan Ikram; M Candida Deniz-Naranjo; Magda Tsolaki; Maitée Rosende-Roca; Malin Löwenmark; Marc Hulsman; Marco Spallazzi; Margaret A Pericak-Vance; Margaret Esiri; María Bernal Sánchez-Arjona; Maria Carolina Dalmasso; María Teresa Martínez-Larrad; Marina Arcaro; Markus M Nöthen; Marta Fernández-Fuertes; Martin Dichgans; Martin Ingelsson; Martin J Herrmann; Martin Scherer; Martin Vyhnalek; Mary H Kosmidis; Mary Yannakoulia; Matthias Schmid; Michael Ewers; Michael T Heneka; Michael Wagner; Michela Scamosci; Miia Kivipelto; Mikko Hiltunen; Miren Zulaica; Montserrat Alegret; Myriam Fornage; Natalia Roberto; Natasja M van Schoor; Nazib M Seidu; Nerisa Banaj; Nicola J Armstrong; Nikolaos Scarmeas; Norbert Scherbaum; Oliver Goldhardt; Oliver Hanon; Oliver Peters; Olivia Anna Skrobot; Olivier Quenez; Ondrej Lerch; Paola Bossù; Paolo Caffarra; Paolo Dionigi Rossi; Paraskevi Sakka; Per Hoffmann; Peter A Holmans; Peter Fischer; Peter Riederer; Qiong Yang; Rachel Marshall; Rajesh N Kalaria; Richard Mayeux; Rik Vandenberghe; Roberta Cecchetti; Roberta Ghidoni; Ruth Frikke-Schmidt; Sandro Sorbi; Sara Hägg; Sebastiaan Engelborghs; Seppo Helisalmi; Sigrid Botne Sando; Silke Kern; Silvana Archetti; Silvia Boschi; Silvia Fostinelli; Silvia Gil; Silvia Mendoza; Simon Mead; Simona Ciccone; Srdjan Djurovic; Stefanie Heilmann-Heimbach; Steffi Riedel-Heller; Teemu Kuulasmaa; Teodoro Del Ser; Thibaud Lebouvier; Thomas Polak; Tiia Ngandu; Timo Grimmer; Valentina Bessi; Valentina Escott-Price; Vilmantas Giedraitis; Vincent Deramecourt; Wolfgang Maier; Xueqiu Jian; Yolande A L Pijnenburg; Patrick Gavin Kehoe; Guillermo Garcia-Ribas; Pascual Sánchez-Juan; Pau Pastor; Jordi Pérez-Tur; Gerard Piñol-Ripoll; Adolfo Lopez de Munain; Jose María García-Alberca; María J Bullido; Victoria Álvarez; Alberto Lleó; Luis M Real; Pablo Mir; Miguel Medina; Philip Scheltens; Henne Holstege; Marta Marquié; María Eugenia Sáez; Ángel Carracedo; Philippe Amouyel; Gerard D Schellenberg; Julie Williams; Sudha Seshadri; Cornelia M van Duijn; Karen A Mather; Raquel Sánchez-Valle; Manuel Serrano-Ríos; Adelina Orellana; Lluís Tárraga; Kaj Blennow; Martijn Huisman; Ole A Andreassen; Danielle Posthuma; Jordi Clarimón; Mercè Boada; Wiesje M van der Flier; Alfredo Ramirez; Jean-Charles Lambert; Sven J van der Lee; Agustín Ruiz
Journal:  Nat Commun       Date:  2021-06-07       Impact factor: 14.919

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  2 in total

1.  The role of vascular dementia associated genes in patients with Alzheimer's disease: A large case-control study in the Chinese population.

Authors:  Xuewen Xiao; Lina Guo; Xinxin Liao; Yafang Zhou; Weiwei Zhang; Lu Zhou; Xin Wang; Xixi Liu; Hui Liu; Tianyan Xu; Yuan Zhu; Qijie Yang; Xiaoli Hao; Yingzi Liu; Junling Wang; Jinchen Li; Bin Jiao; Lu Shen
Journal:  CNS Neurosci Ther       Date:  2021-09-22       Impact factor: 5.243

Review 2.  Report of two pedigrees with heterozygous HTRA1 variants-related cerebral small vessel disease and literature review.

Authors:  Hui Zhou; Bin Jiao; Ziyu Ouyang; Qihui Wu; Lu Shen; Liangjuan Fang
Journal:  Mol Genet Genomic Med       Date:  2022-08-10       Impact factor: 2.473

  2 in total

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