| Literature DB >> 35946346 |
Hui Zhou1, Bin Jiao1,2,3,4,5, Ziyu Ouyang1, Qihui Wu6, Lu Shen1,2,3,4,5,7, Liangjuan Fang1,2,3,4,5.
Abstract
BACKGROUND: Biallelic HTRA1 pathogenic variants are associated with autosomal recessive cerebral arteriopathy with subcortical infarcts and leukoencephalopathy (CARASIL). Recent studies have indicated that heterozygous HTRA1 variants are related to autosomal dominant hereditary cerebral small vessel disease (CSVD). However, few studies have assessed heterozygous HTRA1 carriers or the genotype-phenotype correlation.Entities:
Keywords: Alzheimer's disease; CARASIL; HTRA1; cerebral small vessel disease; heterozygous variant
Mesh:
Substances:
Year: 2022 PMID: 35946346 PMCID: PMC9544214 DOI: 10.1002/mgg3.2032
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.473
Clinical characteristics of heterozygous HTRA1‐related CSVD patients we found
| Characteristics | III2, family 1 | III3, family 1 | III12, family 1 | II4, family 2 |
|---|---|---|---|---|
| Sex | F | F | M | F |
| Age at time of study (years) | 56 | 53 | 45 | 50 |
| Age at onset (years) | 52 | 52 | 35 | 49 |
| Initial symptom | Gait disturbance | Gait disturbance | Spondylosis, alopecia | Dementia |
| Alopecia, age at onset (years) | N | N | Y, 35 | N |
| Spondylosis, age at onset (years) | Y | Y | Y, 35 | N |
| Dementia, age at onset (years) | Y | Y | Y, | Y, 49 |
| Stroke, age at onset (years) | Y, 54 | Y, 53 | Y, 45 | N |
| Gait disturbance, age at onset (years) | Y, 53 | Y, 52 | N | N |
| Hypertension | N | N | N | N |
| Diabetes mellitus | N | Y | N | N |
| Hyperlipidemia | N | Y | Y | N |
| Babinski sign | + | + | + | − |
| Oligoclonal band | NA | NA | − | NA |
| Microbleeds | N | Y, multiple | Y, multiple | N |
| Lacunes | N, multiple | Y, multiple | N | N |
| WMH | Y, Fazekas grade 3 | Y, Fazekas grade 3 | Y, Fazekas grade 2 | Y, Fazekas grade 1 |
|
| c.920T>C p.L307P | c.920T>C p.L307P | c.920T>C p.L307P | c.589C>T p.R197X |
Abbreviations: F, female; M, male; N, no; NA, not available; WMHs, white matter hyperintensities; Y, yes; yr, year.
FIGURE 1Characteristics of neuroimage, genetic and microangiopathology in family 1. (a) Pedigrees of family 1. F1, family 1; square, male; circle, female; diagonal black line, deceased individual; question mark, unknown status; full black‐filled symbol, clinically or MRI‐proven affected individual; empty symbol, clinically healthy relative; asterisk, variant carrier individuals. (b) SWISS‐MODEL prediction of advanced structural changes (PDB ID: 3NZi). Red, mutant site; yellow, LD ring; green, L3 ring; blue, trypsin region; purple, linker region. (c) Sequence chromatograms of heterozygous variant GSN c.11_38del p.H4Rfs*86 in proband of family 1. (d) Sequence chromatograms of heterozygous variant HTRA1 c.920T>C p.L307P in proband of family 1. (e) Sequence chromatograms of heterozygous variant HTRA1 c.920T>C p.L307P in variant carriers of III3 in family 1. (f) Neuroimages of III12. The cerebral MRI scan showed bilateral diffuse white matter abnormalities involving deep frontal parietal lobes and subcortical and periventricular areas (Fazekas grade 2), with multiple microhemorrhage lesions in the right frontal lobe, left parietal lobe, and pons. There was no obvious abnormality in brain magnetic resonance angiography (MRA). Spinal MRI showed multilevel degenerative disc disease (C3/4, C4/5, C6/7, C7/T1, L2/3, L3/4, L4/5, and L5/S1). (g) neuroimages of III3. The cerebral MRI scan showed the following: 1. High signal intensities in the corpus callosum, deep white matter, and periventricular area (Fazekas grade 3); 2. Brain atrophy, bilateral ventricular dilatation, and hydronephrosis accompanied by Para‐interstitial brain edema; 3. Multiple lacunar foci in both frontal lobes and basal ganglia; 4. Multiple intracranial microbleeds; 5. No obvious abnormality on brain MRA. Her spine MRI showed multilevel degenerative disc disease (C2/3, C3/4, C4/5, C5/6, C6/7, T12/L1, L2/3, L3/4, L4/5, and L5/S1). (h) HE staining of a skin biopsy of III3. The vascular wall of the dermal fat layer was thickened without normal structure; instead, it was surrounded by eosinophilic transparent denatured clumps, and there were nucleus‐like substances surrounded by empty halos scattered in the center of the clumps
FIGURE 2Characteristics of neuroimage and variant in family 2. (a) Pedigrees of family 2. F2, family 2; square, male; circle, female; diagonal black line, deceased individual; full black‐filled symbol, clinically or MRI‐proven affected individual; empty symbol, clinically healthy relative; asterisk, variant carrier individuals. (b) SWISS‐MODEL prediction of advanced structural changes (PDB ID: 3NZi. 1A). (c) Sequence chromatograms of heterozygous variant INPP5D c.3344_3346dup p.P1115dup in variant carriers. (d) Sequence chromatograms of heterozygous variant HTRA1 c.589C>T p.R197X in variant carriers. (e) Neuroimages of the proband in family 2. Her cerebral MRI scan showed high signal intensities in periventricular areas and supratentorial deep white matter (Fazekas grade 1) without microbleeds or lacunar infarction. Medial temporal lobe atrophy (MTA) scale 1
Summary of variants identified in patients with HTRA1‐related CSVD and CARASIL
| No. | cDNA | Amino acids | Domain | Trimerization | Protease activity | Allele frequency of gnomAD | PolyPhen2 | SIFT | Patients | Families | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
| |||||||||||
| 1 | 359G>A | G120D | Kazal | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Lee et al. ( |
| 2 | 361A>C | S121R | Kazal | Missense | NA | NA | Probably damaging | Deleterious | 1 | 1 | Verdura et al. ( |
| 3 | 367G>T | A123S | Kazal | Missense | NA | NA | Probably damaging | Neutral | 1 | 1 | Verdura et al. ( |
| 4 | 397C>G | R133G | Kazal | Missense | NA | NA | Probably damaging | Deleterious | 1 | 1 | Verdura et al. ( |
| 5 | NA | S136G | Kazal | Missense | NA | NA | Benign | Neutral | 1 | 1 | Di Donato et al. ( |
| 6 | 451C>A | Q151K | Kazal | Missense | NA | 0.0001572 | Probably damaging | Deleterious | 2 | 2 | Di Donato et al. ( |
| 7 | 451C>T | Q151X | Kazal | Nonsense | NFM | NA | / | / | 1 | 1 | Thaler et al. ( |
| 8 | 497G>T | R166L | Linker | Missense | Decreased | NA | Probably damaging | Deleterious | 3 | 1 | Verdura et al. ( |
| 9 | 517G>C | A173P | Linker | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Verdura et al. ( |
| 10 | 521A>C | D174A | Linker | Missense | NA | 0.000003976 | Probably damaging | Deleterious | 1 | 1 | Tan et al. ( |
| 11 | 523G>A | V175M | Linker | Missense | NA | 0.000003976 | Probably damaging | Deleterious | 3 | 2 | Di Donato et al. ( |
| 12 | 527T>C | V176A | Linker | Missense | NA | NA | Probably damaging | Deleterious | 6 | 1 | Zhang et al. ( |
| 13 | 536T>A | I179N | Linker | Missense | Decreased | NA | Probably damaging | Deleterious | 2 | 1 | Lee et al. ( |
| 14 | 543delT | A182fs | Linker | Frameshift | Decreased | NA | / | / | 1 | 1 | Lee et al. ( |
| 15 | 589C>T | R197X | Linker | Nonsense | NFM | 0.000007952 | / | / | 2 | 2 | Zhang et al. ( |
| 16 | 614C>G | S205C | Trypsin | Missense | decreased | NA | Probably damaging | Deleterious | 2 | 1 | Zhuo et al. ( |
| 17 | NA | G206E | Trypsin | Missense | NA | NA | Probably damaging | Deleterious | 1 | 1 | Di Donato et al. ( |
| 18 | 632A>C | E211A | Trypsin | Missense | NA | NA | Probably damaging | Deleterious | 1 | 1 | Tan et al. ( |
| 19 | 646G>A | V216M | Trypsin | Missense | NA | 0.000007952 | Probably damaging | Neutral | 2 | 1 | Kono et al. ( |
| 20 | 679C>T | R227W | Trypsin | Missense | NA | 0.00007777 | Probably damaging | Deleterious | 4 | 4 | Tan et al. ( |
| 21 | 767T>C | I256T | Trypsin | Missense | Decreased | 0.00001193 | Probably damaging | Deleterious | 1 | 1 | Lee et al. ( |
| 22 | 824C>T | P275L | Trypsin | Missense | NA | 0.00001195 | Probably damaging | Deleterious | 3 | 1 | Zhang et al. ( |
| 23 | 827G>C | G276A | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Lee et al. ( |
| 24 | 834C>A | F278L | Trypsin | Missense | NA | 0.000003984 | Probably damaging | Deleterious | 1 | 1 | Tan et al. ( |
| 25 | 848G>A | G283E | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Nozaki et al. ( |
| 26 | 847G>A | G283R | Trypsin | Missense | NA | 0.000003981 | Probably damaging | Deleterious | 1 | 1 | Oluwole et al. ( |
| 27 | 852C>A | S284R | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Verdura et al. ( |
| 28 | 850A>G | S284G | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 3 | 1 | Verdura et al. ( |
| 29 | 851G>A | S284N | Trypsin | Missense | NA | NA | Probably damaging | Deleterious | 1 | 1 | Kono et al. ( |
| 30 | 854C>A | P285Q | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Verdura et al. ( |
| 31 | 856T>G | F286V | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 2 | 1 | Verdura et al. ( |
| 32 | 865C>T | Q289X | Trypsin | Nonsense | Decreased | NA | / | / | 2 | 1 | Lee et al. ( |
| 33 | 905G>A | R302Q | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 8 | 4 | Ito et al. ( |
| 34 | 920T>C | L307P | Trypsin | Missense | NA | NA | Probably damaging | Deleterious | 3 | 1 | – |
| 35 | 940A>G | M314V | Trypsin | Missense | NA | 0.000007965 | Probably damaging | Deleterious | 1 | 1 | Tan et al. ( |
| 36 | 956C>T | T319I | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Nozaki et al. ( |
| 37 | 958G>A | D320N | Trypsin | Missense | NA | 0.00001596 | Probably damaging | Deleterious | 1 | 1 | Tan et al. ( |
| 38 | 971A>C | N324T | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 2 | 2 | Lee et al. ( |
| 39 | 973‐1G>A | Y325_L335del | Trypsin | Splice site | Splice site | NA | / | / | 1 | 1 | Verdura et al. ( |
| 40 | 1103A>G | H368R | PDZ | Missense | Decreased | NA | Benign | Deleterious | 1 | 1 | Tan et al. ( |
| 41 | 1348G>C | D450H | PDZ | Missense | Decreased | NA | Probably damaging | Deleterious | 2 | 2 | Tan et al. ( |
|
| |||||||||||
| 1 | 126delG/961G>A | Q42fs/ A321T | Compounds heterozygous | Decreased | / | / | 1 | 1 | Bianchi et al. ( | ||
| 2 | 161_162insAG | G56fs | IGFBP | Frameshift | NFM | NA | / | / | 1 | 1 | Cai et al. ( |
| 3 | 502A>T | K168X | Linker | Nonsense | Decreased | NA | / | / | 1 | 1 | Preethish‐Kumar et al. ( |
| 4 | 517G>A | A173T | Linker | Missense | NA | 0.000003976 | Probably damaging | Deleterious | 1 | 1 | Khaleeli et al. ( |
| 5 | 616G>A | G206R | Trypsin | Missense | NA | 0.00003184 | Probably damaging | Deleterious | 1 | 1 | Ibrahimi et al. ( |
| 6 | 739delG | E247Rfs | Trypsin | Frameshift | Decreased | NA | / | / | 1 | 1 | Preethish‐Kumar et al. ( |
| 7 | 754G>A | A252T | Trypsin | Missense | Decreased | 0.000003977 | Probably damaging | Deleterious | 2 | 1 | Hara et al. ( |
| 8 | 805insG | S270Lfs*69 | Trypsin | Frameshift | Decreased | NA | / | / | 3 | 1 | Ziaei et al. ( |
| 9 | 821G>A | R274Q | Trypsin | Missense | NA | 0.000007086 | Probably damaging | Deleterious | 3 | 2 | Nishimoto et al. ( |
| 10 | 830̿_831delAG | E277Vfs | Trypsin | Frameshift | NA | NA | / | / | 1 | 1 | Preethish‐Kumar et al. ( |
| 11 | 847G>T | G283X | Trypsin | Missense | Decreased | NA | Probably damaging | Deleterious | 1 | 1 | Yu et al. ( |
| 12 | 889G>A | V297M | Trypsin | Missense | NA | NA | Probably damaging | Deleterious | 5 | 2 | Hara et al. ( |
| 13 | 958G>A/1021G>A | D320N/ G341R | Trypsin | Compounds heterozygous | NA | 0.00001596 | Probably damaging | Deleterious | 1 | 1 | Xie & Zhang ( |
| 14 | 983C>A | S328X | Trypsin | Nonsense | NFM | NA | / | / | 1 | 1 | Gündüz et al. ( |
| 15 | 1005+1G>T | NA | Trypsin | Splice site | Splice site | NA | / | / | 1 | 1 | Roeben et al. ( |
| 16 | 1091T>C | L364P | Trypsin | Missense | NA | NA | Probably damaging | Deleterious | 2 | 1 | Wang et al. ( |
|
| |||||||||||
| 1 | 496C>T | R166C | Linker | Missense | Decreased | NA | Probably damaging | Deleterious | 7 | 4 | Bougea et al. ( |
| 2 | 854C>T | P285L | Trypsin | Missense | Decreased | 0.00000398 | Probably damaging | Deleterious | 3 | 3 | Chen et al. ( |
| 3 | 883G>A | G295R | Trypsin | Missense | Decreased | 0.00001194 | Probably damaging | Deleterious | 5 | 2 | Di Donato et al. ( |
| 4 | 904C>T | R302X | Trypsin | Nonsense | Decreased | NA | / | / | 5 | 4 | Hara et al. ( |
| 5 | 1108C>T | R370X | PDZ | Nonsense | NFM | 0.00001591 | / | / | 3 | 3 | Bayrakli et al. ( |
Notes: Symptomatic carriers, heterozygous HTRA1‐related CSVD; CARASIL, cerebral autosomal recessive arteriopathy with subcortical infarcts and leukoencephalopathy; NFM, nonsense/frameshift mutation; NA, not available; /, not applicable; ExAC, Exome Aggregation Consortium; IGFBP, insulin‐like growth factor binding domain; LD, loop D; L3, loop 3.
Summary of HTRA1 variants identified in only one group
| Items | Symptomatic carriers | CARASIL |
|
|---|---|---|---|
| Total variants | 46 | 19 | |
| Missense variants | 39 (84.8) | 10 (52.6) | .006 |
| Kazal‐like (99–157) | 6 (13.0) | 0 (0.0) | .098 |
| Linker region (158–203) | 7 (15.2) | 2 (10.5) | .618 |
| LD (283–291)/L3 (301–314) | 11 (23.9) | 2 (10.5) | .220 |
| Trypsin (204–364) except L3/LD | 13 (28.3) | 6 (31.6) | .789 |
| PDZ (365–467) | 2 (4.3) | 0 (0.0) | .356 |
| Nonsense/frameshift variants | 6 (13.0) | 8 (42.1) | .010 |
| IGFBP | 0 (0.0) | 1 (5.3) | .117 |
| Kazal‐like (99–157) | 1 (2.2) | 0 (0.0) | .517 |
| Linker region (158–203) | 2 (4.3) | 1 (5.3) | .873 |
| LD (283–291)/L3 (301–314) | 2 (4.3) | 1 (5.3) | .873 |
| Trypsin (204–364) except L3/LD | 0 (0.0) | 5 (26.3) | <.001 |
| PDZ (365–467) | 1 (2.2) | 1 (5.3) | .512 |
| Variants in the splice site | 1 (2.2) | 1 (5.3) | .512 |
Notes: Two compounds heterozygous HTRA1 variants of CARASIL are not involved. Symptomatic carriers, heterozygous HTRA1‐related CSVD CARASIL, cerebral autosomal recessive arteriopathy with subcortical infarcts and leukoencephalopathy; IGFBP, insulin‐like growth factor binding domain; LD, loop D; L3, loop 3.
FIGURE 3Distribution and frequency of HTRA1 variants in autosomal dominant CSVD and CARASIL patients. The gray bar stands for missense variants; red bar, nonsense variant; blue bar, frameshift variant; green bar, variants both in heterozygous and homozygous; Orange bar, the novel variant of family 1 found in this study. The asterisk indicates that the variant was pathogenic predicted by ACMG. Compounds heterozygous HTRA1 variants in CARASIL patients are not located in the diagram and are listed separately with violet font. HTRA1: High‐temperature requirement serine peptidase A1; aa: amino acid
Clinical characteristics of patients with CSVD related to heterozygous HTRA1 variants and typical CARASIL
| Characteristics | Heterozygous | CARASIL ( |
|
|---|---|---|---|
| Age of diagnosis, years, median (mean ± SD) | 57.87 ± 10.67 | 34.90 ± 8.47 | <.001 |
| Age of onset, years, median (mean ± SD) | 51.90 ± 12.50 | 19.13 ± 7.51 | <.001 |
| Gender, Male, n (%) | 57 (66.5) | 12 (41.4) | .022 |
| Vascular risk factors, n (%) | 42 (54.5) | 2 (6.9) | <.001 |
| Family history, n (%) | 52 (59.8) | 17 (58.6) | .913 |
| Consanguineous parents, n (%) | 0 (0) | 20 (69.0) | <.001 |
|
| |||
| Alopecia, n (%) | 13 (14.9) | 23 (79.3) | <.001 |
| Spondylosis, n (%) | 17 (19.5) | 27 (93.1) | <.001 |
|
| |||
| Cognitive impairment, n (%) | 51 (58.6) | 21 (72.4) | .185 |
| Psychiatric Disorders, n (%) | 20 (23.0) | 18 (62.1) | <.001 |
| Stroke, n (%) | 48 (55.2) | 13 (44.8) | .334 |
| Gait disturbance, n (%) | 36 (41.4) | 24 (82.8) | <.001 |
| Headache, n (%) | 10 (11.5) | 2 (6.9) | .481 |
|
| |||
| Confluent WMHs, n (%) | 63 (72.4) | 28 (96.6) | .006 |
| Microbleeds, n (%) | 19 (21.8) | 11 (37.9) | .087 |
| Lacunes, n (%) | 52 (59.8) | 15 (51.7) | .447 |
Abbreviations: CARASIL, cerebral autosomal recessive arteriopathy with subcortical infarcts and leukoencephalopathy; WMHs, white matter hyperintensities.