Literature DB >> 34541074

Single-molecule Analysis of DNA Replication Dynamics in Budding Yeast and Human Cells by DNA Combing.

Hélène Tourrière1, Julie Saksouk1, Armelle Lengronne1, Philippe Pasero1.   

Abstract

The DNA combing method allows the analysis of DNA replication at the level of individual DNA molecules stretched along silane-coated glass coverslips. Before DNA extraction, ongoing DNA synthesis is labeled with halogenated analogues of thymidine. Replication tracks are visualized by immunofluorescence using specific antibodies. Unlike biochemical and NGS-based methods, DNA combing provides unique information on cell-to-cell variations in DNA replication profiles, including initiation and elongation. Finally, this assay can be used to monitor the effect of DNA lesions on fork progression, arrest and restart.
Copyright © 2017 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  DNA stretching; Fork speed; Human cells; Replication; Replication origin; Yeast

Year:  2017        PMID: 34541074      PMCID: PMC8410272          DOI: 10.21769/BioProtoc.2305

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  22 in total

Review 1.  Maintenance of fork integrity at damaged DNA and natural pause sites.

Authors:  Hélène Tourrière; Philippe Pasero
Journal:  DNA Repair (Amst)       Date:  2007-03-26

2.  A simple and optimized method of producing silanized surfaces for FISH and replication mapping on combed DNA fibers.

Authors:  Hélène Labit; Arach Goldar; Guillaume Guilbaud; Carine Douarche; Olivier Hyrien; Kathrin Marheineke
Journal:  Biotechniques       Date:  2008-12       Impact factor: 1.993

3.  Defining replication origin efficiency using DNA fiber assays.

Authors:  Sandie Tuduri; Hélène Tourrière; Philippe Pasero
Journal:  Chromosome Res       Date:  2010-01       Impact factor: 5.239

4.  Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11.

Authors:  Katharina Schlacher; Nicole Christ; Nicolas Siaud; Akinori Egashira; Hong Wu; Maria Jasin
Journal:  Cell       Date:  2011-05-13       Impact factor: 41.582

5.  Mrc1 and Tof1 promote replication fork progression and recovery independently of Rad53.

Authors:  Hélène Tourrière; Gwennaëlle Versini; Violeta Cordón-Preciado; Constance Alabert; Philippe Pasero
Journal:  Mol Cell       Date:  2005-09-02       Impact factor: 17.970

6.  Monitoring S phase progression globally and locally using BrdU incorporation in TK(+) yeast strains.

Authors:  A Lengronne; P Pasero; A Bensimon; E Schwob
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

7.  New vectors for simplified construction of BrdU-Incorporating strains of Saccharomyces cerevisiae.

Authors:  Christopher J Viggiani; Oscar M Aparicio
Journal:  Yeast       Date:  2006 Oct-Nov       Impact factor: 3.239

8.  Analysis of DNA replication profiles in budding yeast and mammalian cells using DNA combing.

Authors:  Julien N Bianco; Jérôme Poli; Julie Saksouk; Julien Bacal; Maria Joao Silva; Kazumasa Yoshida; Yea-Lih Lin; Hélène Tourrière; Armelle Lengronne; Philippe Pasero
Journal:  Methods       Date:  2012-05-03       Impact factor: 3.608

9.  Molecular Combing of Single DNA Molecules on the 10 Megabase Scale.

Authors:  Atanas Kaykov; Thibaud Taillefumier; Aaron Bensimon; Paul Nurse
Journal:  Sci Rep       Date:  2016-01-19       Impact factor: 4.379

10.  Replication fork stability confers chemoresistance in BRCA-deficient cells.

Authors:  Arnab Ray Chaudhuri; Elsa Callen; Xia Ding; Ewa Gogola; Alexandra A Duarte; Ji-Eun Lee; Nancy Wong; Vanessa Lafarga; Jennifer A Calvo; Nicholas J Panzarino; Sam John; Amanda Day; Anna Vidal Crespo; Binghui Shen; Linda M Starnes; Julian R de Ruiter; Jeremy A Daniel; Panagiotis A Konstantinopoulos; David Cortez; Sharon B Cantor; Oscar Fernandez-Capetillo; Kai Ge; Jos Jonkers; Sven Rottenberg; Shyam K Sharan; André Nussenzweig
Journal:  Nature       Date:  2016-07-21       Impact factor: 49.962

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  1 in total

1.  DNA fiber combing protocol using in-house reagents and coverslips to analyze replication fork dynamics in mammalian cells.

Authors:  Gemma Moore; Judit Jimenez Sainz; Ryan B Jensen
Journal:  STAR Protoc       Date:  2022-05-05
  1 in total

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